mRNA_H-canaliculatus_M_contigs7498.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP8_9PHAE) HSP 1 Score: 278 bits (710), Expect = 1.100e-82 Identity = 178/213 (83.57%), Postives = 182/213 (85.45%), Query Frame = 1
Query: 1 MMRSNLVKLMAGPSPESEAAGDVKNGGDNAGDEKRRRLIVDLDPPRFGRFTGLLDVPGTLLGWAGDRYGGSKGSHESAHRKGNVHFERKKGDSSGNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKLEAMFRTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 639
MMRSNLVKLMAGPSPESEAAGDVKNGGDNAGDEKRRRLIVDL+PPRFGRFTGLLDVPGTLLGWAG YGG G+ ES XXXXXXXXXXXXXXXXXXXXXXXXX +LEAMFRTALNEDQR AVRK+VTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP
Sbjct: 1388 MMRSNLVKLMAGPSPESEAAGDVKNGGDNAGDEKRRRLIVDLEPPRFGRFTGLLDVPGTLLGWAGGCYGG--GNAES------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSTGELEAMFRTALNEDQRDAVRKLVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 1592
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT6_ECTSI) HSP 1 Score: 159 bits (403), Expect = 6.460e-42 Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1
Query: 394 MFRTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 639
MFRTALNEDQR AVRK+VTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVL+TSYTHSAVDNLLLKLIEEGVPCLRVGKP
Sbjct: 1 MFRTALNEDQRDAVRKLVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLVTSYTHSAVDNLLLKLIEEGVPCLRVGKP 82
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBL3_HETAK) HSP 1 Score: 114 bits (286), Expect = 4.200e-28 Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = 1
Query: 379 EKLEAMFRTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVG 633
++L F+T LNEDQ+ AVR VVTA+DYAL+LGMPG GKT IA+ VR+L+ARGA VL+TSYTHSAVDNLLLKL+ GVP RVG
Sbjct: 110 QELMKEFQT-LNEDQQEAVRAVVTAEDYALILGMPGAGKTSVIAYIVRLLVARGARVLVTSYTHSAVDNLLLKLVARGVPVARVG 193
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBK5_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.000e-25 Identity = 86/223 (38.57%), Postives = 104/223 (46.64%), Query Frame = 1
Query: 4 MRSNLVKLMAGPSPESEAAGDVK-------NGG----DNAGDEKRRRLIVDLDPPRFGRFTGLLDVPG-TLLGWAGDRYGGSKGSHESAHRKGNVHFERKKGDSSGNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKLEAMFRTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGK 636
MRSN++ L GP ++ DV GG AGDEKRRRLIV L PP F + + TLL G R +G E R+ F R LN DQ+ AV KV+TA+D ALLLGMPGTGKTWTIAF +R L+ G SVLITSYTH+ VD +LL L E VP +R+G+
Sbjct: 1226 MRSNVMSLFTGPVENAKKGTDVHAHKEPRPKGGLRLVPTAGDEKRRRLIVHLQPPSFSQKPCPVPFDAVTLLRQQGSRE--VRGCGEKQLRE---EFSR------------------------------------------------LNPDQQRAVEKVLTAQDMALLLGMPGTGKTWTIAFVIRALVLTGKSVLITSYTHTGVDTVLLNLRECQVPFIRLGR 1395
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRT5_9STRA) HSP 1 Score: 112 bits (280), Expect = 5.350e-25 Identity = 85/223 (38.12%), Postives = 103/223 (46.19%), Query Frame = 1
Query: 4 MRSNLVKLMAGPSPESEAAGDVK-------NGG----DNAGDEKRRRLIVDLDPPRFGRFTGLLDVPG-TLLGWAGDRYGGSKGSHESAHRKGNVHFERKKGDSSGNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKLEAMFRTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGK 636
MRSN++ L GP ++ DV GG AGDEKRRRLIV L PP F + + TLL G R +G E R+ F R LN DQ+ AV KV+TA+D ALLLGMPGTGKTWTIAF +R L+ G SVLITSYTH+ VD +L L E VP +R+G+
Sbjct: 716 MRSNIMSLFTGPVENAKKGTDVHAHKEPRPKGGLRLVPTAGDEKRRRLIVHLQPPSFSQKPCPVPFDAVTLLRQQGSRE--VRGCGEKQLRE---EFSR------------------------------------------------LNPDQQRAVEKVLTAQDMALLLGMPGTGKTWTIAFVIRALVLTGKSVLITSYTHTGVDTVLHNLRERQVPFIRLGR 885
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease DNA2-like n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7X2E4_NICSY) HSP 1 Score: 107 bits (268), Expect = 1.180e-24 Identity = 49/76 (64.47%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 409 LNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGK 636
LN+DQR A+ K++TAKDYAL+LGMPGTGKT T+ +AV+ LL RG+S+L+TSYT+SAVDNLLLKL +G+ +R+G+
Sbjct: 129 LNDDQRRAILKILTAKDYALILGMPGTGKTSTMVYAVKALLMRGSSILLTSYTNSAVDNLLLKLKAQGIDFIRIGR 204
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X802_GLOUD) HSP 1 Score: 111 bits (277), Expect = 1.380e-24 Identity = 58/85 (68.24%), Postives = 70/85 (82.35%), Query Frame = 1
Query: 385 LEAMFRTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 639
L+ FR LN DQ+ AV+KV+++ DYAL+LGMPGTGKT TI+FAVRVLL G SVL+TSYTHSAVDNLLLKL+E +P LR+G P
Sbjct: 1071 LDHFFR--LNTDQQRAVQKVLSSVDYALVLGMPGTGKTSTISFAVRVLLFLGFSVLVTSYTHSAVDNLLLKLLEFKLPMLRIGNP 1153
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease DNA2 like protein n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A8I2ZGM8_9PEZI) HSP 1 Score: 110 bits (276), Expect = 1.690e-24 Identity = 51/80 (63.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 400 RTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 639
R +LN DQ+AA+ KV+TA+DYAL+LGMPGTGKT TIA +R L+++G SVL+TSYTH+AVDN+LLKL ++ +P LR+G P
Sbjct: 294 RASLNVDQQAAIEKVMTAQDYALVLGMPGTGKTTTIAHIIRALVSQGKSVLLTSYTHTAVDNILLKLKDDSIPVLRLGAP 373
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4LH73_9PEZI) HSP 1 Score: 110 bits (276), Expect = 1.770e-24 Identity = 51/80 (63.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 400 RTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 639
R +LN DQ+AA+ KV+TA+DYAL+LGMPGTGKT TIA +R L+++G SVL+TSYTH+AVDN+LLKL ++ +P LR+G P
Sbjct: 510 RASLNVDQQAAIEKVMTAQDYALVLGMPGTGKTTTIAHIIRALVSQGKSVLLTSYTHTAVDNILLKLKDDSIPVLRLGAP 589
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Match: DNA (replication ATP-dependent helicase/nuclease n=10 Tax=Verticillium TaxID=1036719 RepID=A0A3M9Y0J8_9PEZI) HSP 1 Score: 110 bits (274), Expect = 3.470e-24 Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query: 400 RTALNEDQRAAVRKVVTAKDYALLLGMPGTGKTWTIAFAVRVLLARGASVLITSYTHSAVDNLLLKLIEEGVPCLRVGKP 639
R +LN DQ+AA+ KV+TA+DYAL+LGMPGTGKT TIA +R L+++G SVL+TSYTH+AVDN+LLKL + +P LR+G P
Sbjct: 1105 RASLNVDQQAAIEKVMTAQDYALVLGMPGTGKTTTIAHIIRALVSQGKSVLLTSYTHTAVDNILLKLKHDSIPVLRLGAP 1184 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7498.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7498.1.1 >prot_H-canaliculatus_M_contigs7498.1.1 ID=prot_H-canaliculatus_M_contigs7498.1.1|Name=mRNA_H-canaliculatus_M_contigs7498.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=213bp MMRSNLVKLMAGPSPESEAAGDVKNGGDNAGDEKRRRLIVDLDPPRFGRFback to top mRNA from alignment at H-canaliculatus_M_contigs7498:3..1966- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7498.1.1 ID=mRNA_H-canaliculatus_M_contigs7498.1.1|Name=mRNA_H-canaliculatus_M_contigs7498.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1964bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7498:3..1966- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7498:3..1966- >mRNA_H-canaliculatus_M_contigs7498.1.1 ID=mRNA_H-canaliculatus_M_contigs7498.1.1|Name=mRNA_H-canaliculatus_M_contigs7498.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=639bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7498:3..1966- (Hapterophycus canaliculatus Oshoro7m male)back to top |