mRNA_H-canaliculatus_M_contigs74964.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74964.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74964.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74964.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.560e-24
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 KVEQDIQQAGAVALPASAAAQAQASV-PACSSLTEWFAAYGEPNPPAATGLMTNFEESPKIYGGTNHHR 204
            +VEQDIQQA  VA   +AAAQAQ S  P CSSL EWFAAYGEP P A++GLMTNFEESPKIYGGTNHHR
Sbjct:  103 QVEQDIQQADVVASSTAAAAQAQPSARPPCSSLAEWFAAYGEPAPSASSGLMTNFEESPKIYGGTNHHR 171
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BLAST of mRNA_H-canaliculatus_M_contigs74964.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWU8_SYMMI)

HSP 1 Score: 48.9 bits (115), Expect = 3.710e-5
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   91 SLTEWFAAYGEP-NPPAATGLMTNFEESPKIYGGTNHHR 204
            S+++WF  YG P N       MT F+ SPKIYGGTNHHR
Sbjct:  122 SMSQWFETYGRPENTHCLEERMTTFQPSPKIYGGTNHHR 160
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BLAST of mRNA_H-canaliculatus_M_contigs74964.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSZ0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.920e-5
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   79 PACSSLTEWFAAYGEPNPPAATGLMTNFEESPKIYGGTNHHR 204
            P  +SL +W A YG    P  +G  + F ++PKIYGGT HHR
Sbjct:  115 PELTSLAQWNARYGTVEKPVPSGFYSGFNDAPKIYGGTEHHR 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74964.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.560e-2476.81protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N4... [more]
Hypothetical3.710e-556.41protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Hypothetical6.920e-547.62protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74964contigH-canaliculatus_M_contigs74964:217..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2N4
Model size225
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.55e-25
EggNOG OGs2C2XI@1|root,2S2SM@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002870.1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.3129184-CDS-H-canaliculatus_M_contigs74964:216..4411696854087.3129184-CDS-H-canaliculatus_M_contigs74964:216..441Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74964 217..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74964.1.1prot_H-canaliculatus_M_contigs74964.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74964 217..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74964.1.1

>prot_H-canaliculatus_M_contigs74964.1.1 ID=prot_H-canaliculatus_M_contigs74964.1.1|Name=mRNA_H-canaliculatus_M_contigs74964.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp
KVEQDIQQAGAVALPASAAAQAQASVPACSSLTEWFAAYGEPNPPAATGL
MTNFEESPKIYGGTNHHRGERPPV*
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mRNA from alignment at H-canaliculatus_M_contigs74964:217..441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74964.1.1 ID=mRNA_H-canaliculatus_M_contigs74964.1.1|Name=mRNA_H-canaliculatus_M_contigs74964.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74964:217..441- (Hapterophycus canaliculatus Oshoro7m male)
AAGGTTGAACAAGATATACAGCAGGCGGGCGCTGTTGCCCTCCCTGCCTC
CGCCGCCGCACAAGCCCAGGCTTCAGTTCCCGCATGTTCGAGTCTTACGG
AGTGGTTCGCGGCGTACGGCGAGCCTAACCCTCCGGCCGCAACCGGTCTT
ATGACAAACTTTGAGGAAAGCCCGAAAATATACGGAGGCACGAACCACCA
CCGAGGTGAAAGGCCGCCAGTATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74964:217..441-

>mRNA_H-canaliculatus_M_contigs74964.1.1 ID=mRNA_H-canaliculatus_M_contigs74964.1.1|Name=mRNA_H-canaliculatus_M_contigs74964.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74964:217..441- (Hapterophycus canaliculatus Oshoro7m male)
AAGGTTGAACAAGATATACAGCAGGCGGGCGCTGTTGCCCTCCCTGCCTC
CGCCGCCGCACAAGCCCAGGCTTCAGTTCCCGCATGTTCGAGTCTTACGG
AGTGGTTCGCGGCGTACGGCGAGCCTAACCCTCCGGCCGCAACCGGTCTT
ATGACAAACTTTGAGGAAAGCCCGAAAATATACGGAGGCACGAACCACCA
CCGAGGTGAAAGGCCGCCAGTATGA
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