mRNA_H-canaliculatus_M_contigs74960.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74960.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74960.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74960.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.070e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 WFPAQERTIFALAQVLIDIFILSPMYALSFIVTTGLLEGKSVDKDIFPTVHDDY 162
            W PA+E   +ALAQVL+D+ +L P++ L F+VTTGLLEG+S  ++I  T+ DDY
Sbjct:  162 WLPAEESKAYALAQVLVDVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDY 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74960.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.070e-1153.70protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74960contigH-canaliculatus_M_contigs74960:4..165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMD9
PFAMsMpv17_PMP22
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons1
Evalue1.13e-05
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size162
COG categoryC
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.2811313-CDS-H-canaliculatus_M_contigs74960:3..1651696854087.2811313-CDS-H-canaliculatus_M_contigs74960:3..165Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74960 4..165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74960.1.1prot_H-canaliculatus_M_contigs74960.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74960 4..165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74960.1.1

>prot_H-canaliculatus_M_contigs74960.1.1 ID=prot_H-canaliculatus_M_contigs74960.1.1|Name=mRNA_H-canaliculatus_M_contigs74960.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=54bp
WFPAQERTIFALAQVLIDIFILSPMYALSFIVTTGLLEGKSVDKDIFPTV
HDDY
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mRNA from alignment at H-canaliculatus_M_contigs74960:4..165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74960.1.1 ID=mRNA_H-canaliculatus_M_contigs74960.1.1|Name=mRNA_H-canaliculatus_M_contigs74960.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74960:4..165- (Hapterophycus canaliculatus Oshoro7m male)
TGGTTCCCGGCGCAGGAGCGCACGATATTTGCGCTGGCACAAGTCTTGAT
AGACATCTTCATCCTCAGCCCGATGTACGCGCTGAGTTTCATCGTCACCA
CCGGTCTCTTGGAGGGGAAGTCTGTGGACAAAGACATATTTCCGACAGTA
CATGACGACTAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74960:4..165-

>mRNA_H-canaliculatus_M_contigs74960.1.1 ID=mRNA_H-canaliculatus_M_contigs74960.1.1|Name=mRNA_H-canaliculatus_M_contigs74960.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74960:4..165- (Hapterophycus canaliculatus Oshoro7m male)
TGGTTCCCGGCGCAGGAGCGCACGATATTTGCGCTGGCACAAGTCTTGAT
AGACATCTTCATCCTCAGCCCGATGTACGCGCTGAGTTTCATCGTCACCA
CCGGTCTCTTGGAGGGGAAGTCTGTGGACAAAGACATATTTCCGACAGTA
CATGACGACTAT
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