mRNA_H-canaliculatus_M_contigs7493.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7493.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7493.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: GatB/YqeY (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS6_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.730e-62
Identity = 105/119 (88.24%), Postives = 110/119 (92.44%), Query Frame = 1
Query:    1 FFSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLKGA 357
            F +  + AGSGD LPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKE K ++LID MLP+LADEATTQKWVDEAIASA AKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLKGA
Sbjct:   93 FLTETKAAGSGDKLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKETKTKQLIDAMLPQLADEATTQKWVDEAIASAGAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLKGA 211          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: Yqey-like (protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.680e-37
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 FFSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLK 351
            F    ++AG+GDTLPD+KC+A+LRK+SK ++ESIDMY KG R +LV+KE     +I+  LP+LAD+ TT KW +EAI SA AKGP DMGKVMG LM  HK EMDG +AQ++V   LK
Sbjct:   74 FLKETKEAGAGDTLPDDKCMAVLRKLSKMRKESIDMYAKGGRQELVDKETVELGIIESFLPQLADKETTTKWAEEAIESAGAKGPLDMGKVMGKLMSQHKDEMDGKIAQQVVGELLK 190          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: GatB/YqeY (domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V1N981_9DELT)

HSP 1 Score: 109 bits (272), Expect = 3.630e-27
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 FFSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLKG 354
            F +  +K GS D++PDE C  +LR++ KQ++ESI+ + KG R+++ E E     ++   LP LADEA T+ WV+ AIA   A GP +MGKVMG LMKAHK E+DG LA+R+V  +L G
Sbjct:   33 FLNEMKKDGS-DSIPDEVCETLLRRLEKQRKESIEAFVKGGREEMAEVERAELAVLQEFLPSLADEAQTRGWVEAAIAETGATGPKEMGKVMGALMKAHKGEIDGNLARRIVQERLAG 149          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: Hypothetical (protein n=6 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ABW1_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 1.820e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 FFSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 348
            F +  ++AGS D++ DE+ + +LRK++KQ+ ESI++Y KG R DL E E     LI+  LPKLADE TT+K+V EAI S  +  P DMGKVMG +MK HK+E+DG + +++ S  L
Sbjct:   55 FLNKEKEAGS-DSISDEEALVVLRKLAKQRVESIELYEKGGRQDLAESEKSELALIEAYLPKLADEETTRKYVQEAIDSTKSSSPKDMGKVMGAVMKDHKSEVDGNVVRKIASELL 169          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YP23_NANGC)

HSP 1 Score: 104 bits (260), Expect = 1.600e-25
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   16 RKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 348
            ++ G+ +TLPDEK I IL K+ KQ+QESI+M+ KG RDD+V+ E     +++  LP+LADEATT++WV  AI    A   SD+GKVMG++MK +K + D  L  +LV   L
Sbjct:   24 KEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDVGKVMGVMMKRYKGKTDNKLVSKLVGEML 134          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS37_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.950e-25
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   16 RKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 348
            ++ G+ +TLPDEK I IL K+ KQ+QESI+M+ KG RDD+V+ E     +++  LP+LADEATT++WV  AI    A   SDMGKVMG++MK +K + D  L  +LV   L
Sbjct:   83 KEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEML 193          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: Protein (YqeY n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRT9_PORPP)

HSP 1 Score: 103 bits (257), Expect = 3.910e-24
Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   16 RKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLK 351
            +  G+ ++L D + + +L+K++K +++SI+ Y    R D  +KE +   +I+  LP LADE T ++WV EAIA + AKGP+DMGKVMG+LMKAH+ E+DG +A+ + +  LK
Sbjct:  106 KDGGNKESLTDAEAVDVLKKLAKVRKDSIEAYTNAGRKDAADKEARELAIIEQYLPTLADEGTVEQWVREAIAKSGAKGPADMGKVMGILMKAHRDELDGNMAKNIATEMLK 217          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: GatB/YqeY (domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JLU9_9DELT)

HSP 1 Score: 101 bits (251), Expect = 5.880e-24
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    4 FSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 348
            F    K     TL DE C  +LRK++KQ+QESI  + +  R +  E E     +I+  LP LADEATT++W++EAIA+  A    D+G+VMG LM+AHK E+DGGLA R+   +L
Sbjct:   33 FLFATKEDGSTTLADEACFPLLRKLAKQRQESISAFSEAGRSERAEAERAELSVIEEFLPSLADEATTRRWLEEAIAATGASSAKDVGRVMGALMQAHKGELDGGLANRIARERL 147          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: GatB/YqeY (domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GUZ3_9DELT)

HSP 1 Score: 100 bits (248), Expect = 1.480e-23
Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 FFSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVS 339
            F +  +K G+ +TLPDE CI +LR++ KQ++ESI+ +    R++   KE     +I+  LP LADEATT+ WV+EAIA + A    ++GKVMG LMKAHK E+DGG A+++ +
Sbjct:   33 FLNEMKKDGA-ETLPDEICIGLLRRLEKQRKESIEAFDAAGREEQAAKERAELAVIETYLPSLADEATTRAWVEEAIAQSGASSAKELGKVMGALMKAHKGEIDGGRARQIAA 144          
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS44_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 2.000e-23
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 FFSLFRKAGSGDTLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDEAIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 348
            F +  ++ G+GD+LPD+  I  LRK++K ++ESIDM+RKG RDDL + E    ++I+  LP LA    T +W  EAIA   A  P D+GKVMG +M+ H+ ++DG  A+++V   L
Sbjct:   71 FLTALKQEGAGDSLPDKAAIEQLRKLAKMRKESIDMFRKGGRDDLADAEEAELDVIEQWLPTLASREQTIEWAKEAIAKVGASKPGDVGKVMGAIMREHREDIDGSSARQIVQELL 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7493.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GatB/YqeY1.730e-6288.24n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS6_ECTSI[more]
Yqey-like5.680e-3758.97protein-domain-containing protein n=1 Tax=Tribonem... [more]
GatB/YqeY3.630e-2749.15domain-containing protein n=1 Tax=Deltaproteobacte... [more]
Hypothetical1.820e-2649.14protein n=6 Tax=Rhodosorus marinus TaxID=101924 Re... [more]
Uncharacterized1.600e-2548.65protein n=1 Tax=Nannochloropsis gaditana (strain C... [more]
Uncharacterized1.950e-2549.55protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Protein3.910e-2443.75YqeY n=1 Tax=Porphyridium purpureum TaxID=35688 Re... [more]
GatB/YqeY5.880e-2446.09domain-containing protein n=1 Tax=Deltaproteobacte... [more]
GatB/YqeY1.480e-2346.90domain-containing protein n=1 Tax=Myxococcales bac... [more]
Uncharacterized2.000e-2343.97protein n=1 Tax=Gracilariopsis chorda TaxID=448386... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7493contigH-canaliculatus_M_contigs7493:3548..4864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog102129.Lepto7375DRAFT_5562
PFAMsYqeY
Model size555
Max annot lvl1117|Cyanobacteria
KEGG koko:K09117
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.21e-14
EggNOG OGsCOG1610@1|root,COG1610@2|Bacteria,1G607@1117|Cyanobacteria,1HB1I@1150|Oscillatoriales
Ec32 ortholog descriptionAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal
Ec32 orthologEc-28_002970.1
DescriptionPFAM Yqey-like protein
Cds size285
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.9526665-UTR-H-canaliculatus_M_contigs7493:3547..37421696854086.9526665-UTR-H-canaliculatus_M_contigs7493:3547..3742Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7493 3548..3742 -
1696854087.0070214-UTR-H-canaliculatus_M_contigs7493:4789..48641696854087.0070214-UTR-H-canaliculatus_M_contigs7493:4789..4864Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7493 4790..4864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.9680264-CDS-H-canaliculatus_M_contigs7493:3742..38321696854086.9680264-CDS-H-canaliculatus_M_contigs7493:3742..3832Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7493 3743..3832 -
1696854086.9816732-CDS-H-canaliculatus_M_contigs7493:4185..42691696854086.9816732-CDS-H-canaliculatus_M_contigs7493:4185..4269Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7493 4186..4269 -
1696854086.9927964-CDS-H-canaliculatus_M_contigs7493:4678..47891696854086.9927964-CDS-H-canaliculatus_M_contigs7493:4678..4789Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7493 4679..4789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7493.1.1prot_H-canaliculatus_M_contigs7493.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7493 3743..4789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7493.1.1

>prot_H-canaliculatus_M_contigs7493.1.1 ID=prot_H-canaliculatus_M_contigs7493.1.1|Name=mRNA_H-canaliculatus_M_contigs7493.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=95bp
MSKQQQESIDMYRKGKRDDLVEKEVKMQELIDGMLPKLADEATTQKWVDE
AIASADAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQLKGA*
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mRNA from alignment at H-canaliculatus_M_contigs7493:3548..4864-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7493.1.1 ID=mRNA_H-canaliculatus_M_contigs7493.1.1|Name=mRNA_H-canaliculatus_M_contigs7493.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7493:3548..4864- (Hapterophycus canaliculatus Oshoro7m male)
TTTTTCTCGTTGTTTCGAAAGGCGGGGTCGGGGGACACCCTCCCTGACGA GAAATGCATCGCCATTCTCCGAAAGATGTCGAAGCAACAGCAGGAGTCGA TCGACATGTACCGCAAGGGCAAGCGCGACGACCTCGTAGAAAAGGAGGTC AAGATGCAGGAGCTCATAGACGGCATGCTCCCCAAGGTACGCCATGATCT TTTGGTTTCCCTTTCTCCTGCTCTCCTGCCCCCGGCGAATTTGGAGCTTT GGCGCTTGCCGTTGCCAGGTGTCTTGGCCGTGTAGCGGATTTAAACTCCG TACGCCGAGCTCAGTGTTCCACCGGCGTGCTCCTCTATTTTAAATTCTCG AACGAAGGTTGTTCAACGTCACAAGCTCGGGCGCTGCGCGCCGAGATGAT CCTGCGGTCCACTGCTTATGCTCGTTGTCACGGTCAGCTCATGCCGCTCG CCCCCCTTGCTGTTGTCGTGCTGTCGACCGTTTGCCCTCTGTCTCCTTCG CGGCCTGCTTGCCTGTATCCTGTCTGTCCGTCGTGCCTCCTTGCCTCTGG TGCGTTTCTCGCTCTCCGTTATTTTGCCGCCCTTGTTTTGATCAGCTCGC GGACGAGGCGACTACCCAAAAATGGGTCGACGAGGCGATCGCGTCCGCAG ATGCGAAGGGGCCTTCCGACATGGGCAAGGTGCTAATCTACGTTTCACAG TAACGTTTCATTTTTCTGTTGGCCCGCCTGGGCGGAAGATGGAGTCCCGC GTGGTACACACCCGCTTTAACTCGTGTCAGCAAATCCTAGTTGGCGAACA CATTGGCCTGCTGCGCTCCAGTAAATGTCGAGAGCGAGGTGTAAACTCCA AGTCAGGTCCCAATAAGCAGGGAAAGCAAGGTAGCGAACGGAGACGCCGG TGGAATTGGGGTACCCTGTGGATTGAAAAATGTGGAATAGACTCCCTGTG TGCGCGCTCGCCGTTCTGATCTTTCTGCTTTCGACCGCTTCTGCTGTCCT GTCGCCGTGCGCGACACTTTCGCGAACATCAGGTGATGGGCCTCCTCATG AAGGCGCACAAGACGGAAATGGACGGAGGGCTGGCACAAAGGCTTGTTTC CGCTCAGCTCAAGGGCGCATGATGCCTCGTTCGATTTCCCGCGGGCAGCG CTTGTTTGGAGCTACAGTACAGTCGTGCGGGAGTCCCCGTTGCTTTCAGA CAGTCACCTCTGCACGGAATCGTTTGCATGCCTCGTTCGAATCAAATGCA ACTCCTATATTGTATAGGGGGTGTTGACTCGGGAAAGCGGTCTTACTTGG CCCCCACCCGGAAGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7493:3548..4864-

>mRNA_H-canaliculatus_M_contigs7493.1.1 ID=mRNA_H-canaliculatus_M_contigs7493.1.1|Name=mRNA_H-canaliculatus_M_contigs7493.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7493:3548..4864- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGAAGCAACAGCAGGAGTCGATCGACATGTACCGCAAGGGCAAGCG
CGACGACCTCGTAGAAAAGGAGGTCAAGATGCAGGAGCTCATAGACGGCA
TGCTCCCCAAGCTCGCGGACGAGGCGACTACCCAAAAATGGGTCGACGAG
GCGATCGCGTCCGCAGATGCGAAGGGGCCTTCCGACATGGGCAAGGTGAT
GGGCCTCCTCATGAAGGCGCACAAGACGGAAATGGACGGAGGGCTGGCAC
AAAGGCTTGTTTCCGCTCAGCTCAAGGGCGCATGA
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