mRNA_H-canaliculatus_M_contigs74926.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74926.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74926.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.950e-23
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQ 
Sbjct:  543 EVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQT 585
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucyl-tRNA (synthetase (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PZ22_PEROL)

HSP 1 Score: 93.6 bits (231), Expect = 5.270e-23
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQ+HYPFENK KFE+NFPADF+AEGLDQ 
Sbjct:  104 EVFDCWFESGSMPYAQVHYPFENKQKFEQNFPADFVAEGLDQT 146
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N8U2_PIRSE)

HSP 1 Score: 96.7 bits (239), Expect = 1.940e-22
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQ HYPFENKDKFEKNFPADFIAEGLDQ 
Sbjct:  347 EVFDCWFESGSMPYAQQHYPFENKDKFEKNFPADFIAEGLDQT 389
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucyl-tRNA (synthetase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RTP7_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 2.090e-22
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 VFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            VFDCWFESGSMPYAQ HYPFENK++FEK FPADFIAEGLDQ 
Sbjct:    8 VFDCWFESGSMPYAQAHYPFENKERFEKTFPADFIAEGLDQT 49
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucyl-tRNA (synthetase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M809_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 2.490e-22
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 VFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            VFDCWFESGSMPY QLHYPFENK  FE NFPADF+AEGLDQ 
Sbjct:   30 VFDCWFESGSMPYGQLHYPFENKQLFESNFPADFVAEGLDQT 71
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucine--tRNA (ligase n=10 Tax=Perkinsus TaxID=28000 RepID=C5KT15_PERM5)

HSP 1 Score: 95.9 bits (237), Expect = 5.970e-22
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQ+HYPFENK+KFEKNFPADF+AEGLDQ 
Sbjct:  532 EVFDCWFESGSMPYAQVHYPFENKEKFEKNFPADFVAEGLDQT 574
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MWJ8_PERCH)

HSP 1 Score: 95.9 bits (237), Expect = 5.980e-22
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQ+HYPFENK+KFEKNFPADF+AEGLDQ 
Sbjct:   87 EVFDCWFESGSMPYAQVHYPFENKEKFEKNFPADFVAEGLDQT 129
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucyl-tRNA (synthetase (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6THB5_PEROL)

HSP 1 Score: 94.4 bits (233), Expect = 7.420e-22
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQ+HYPFENK+KFE+NFPADF+AEGLDQ 
Sbjct:  139 EVFDCWFESGSMPYAQVHYPFENKEKFEQNFPADFVAEGLDQT 181
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BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Pseudobacteriovorax antillogorgiicola TaxID=1513793 RepID=A0A1Y6B898_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 8.160e-22
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQLHYPFENKD+FE NFPADFIAEGLDQ 
Sbjct:  519 EVFDCWFESGSMPYAQLHYPFENKDRFEDNFPADFIAEGLDQT 561
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KIJ7_PERM5)

HSP 1 Score: 94.4 bits (233), Expect = 2.080e-21
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQV 129
            +VFDCWFESGSMPYAQ+HYPFENK+KFE+NFPADF+AEGLDQ 
Sbjct:  822 EVFDCWFESGSMPYAQVHYPFENKEKFEENFPADFVAEGLDQT 864
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74926.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Isoleucine--tRNA4.950e-2395.35ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL9_... [more]
Isoleucyl-tRNA5.270e-2386.05synthetase (Fragment) n=1 Tax=Perkinsus olseni Tax... [more]
Isoleucine--tRNA1.940e-2293.02ligase n=1 Tax=Piromyces sp. (strain E2) TaxID=738... [more]
Isoleucyl-tRNA2.090e-2288.10synthetase (Fragment) n=1 Tax=Pyramimonas obovata ... [more]
Isoleucyl-tRNA2.490e-2285.71synthetase n=1 Tax=Monoraphidium neglectum TaxID=1... [more]
Isoleucine--tRNA5.970e-2288.37ligase n=10 Tax=Perkinsus TaxID=28000 RepID=C5KT15... [more]
Uncharacterized5.980e-2288.37protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 ... [more]
Isoleucyl-tRNA7.420e-2286.05synthetase (Fragment) n=1 Tax=Perkinsus olseni Tax... [more]
Isoleucine--tRNA8.160e-2290.70ligase n=1 Tax=Pseudobacteriovorax antillogorgiico... [more]
Isoleucine--tRNA2.080e-2186.05ligase n=1 Tax=Perkinsus marinus (strain ATCC 5098... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74926contigH-canaliculatus_M_contigs74926:290..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FTL9
Preferred nameILERS
PFAMsAnticodon_1,tRNA-synt_1
Model size135
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0019899,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0051020,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue8.11e-24
EggNOG OGsCOG0060@1|root,KOG0434@2759|Eukaryota
EC6.1.1.5
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
Cds size135
COG categoryJ
BiGG ReactioniRC1080.CRv4_Au5_s16_g6096_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.9218028-CDS-H-canaliculatus_M_contigs74926:289..4241696854086.9218028-CDS-H-canaliculatus_M_contigs74926:289..424Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74926 290..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74926.1.1prot_H-canaliculatus_M_contigs74926.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74926 290..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74926.1.1

>prot_H-canaliculatus_M_contigs74926.1.1 ID=prot_H-canaliculatus_M_contigs74926.1.1|Name=mRNA_H-canaliculatus_M_contigs74926.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
KVFDCWFESGSMPYAQLHYPFENKDKFEKNFPADFIAEGLDQVL*
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mRNA from alignment at H-canaliculatus_M_contigs74926:290..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74926.1.1 ID=mRNA_H-canaliculatus_M_contigs74926.1.1|Name=mRNA_H-canaliculatus_M_contigs74926.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74926:290..424- (Hapterophycus canaliculatus Oshoro7m male)
AAGGTGTTCGACTGCTGGTTCGAGTCCGGCTCGATGCCGTACGCGCAGCT
TCACTACCCCTTCGAGAACAAGGACAAGTTCGAGAAAAACTTCCCGGCCG
ACTTTATCGCAGAGGGTCTCGACCAGGTACTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74926:290..424-

>mRNA_H-canaliculatus_M_contigs74926.1.1 ID=mRNA_H-canaliculatus_M_contigs74926.1.1|Name=mRNA_H-canaliculatus_M_contigs74926.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74926:290..424- (Hapterophycus canaliculatus Oshoro7m male)
AAGGTGTTCGACTGCTGGTTCGAGTCCGGCTCGATGCCGTACGCGCAGCT
TCACTACCCCTTCGAGAACAAGGACAAGTTCGAGAAAAACTTCCCGGCCG
ACTTTATCGCAGAGGGTCTCGACCAGGTACTGTAG
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