mRNA_H-canaliculatus_M_contigs74917.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase-like TIM barrel n=4 Tax=Planctomycetes TaxID=203682 RepID=A0A518LEK7_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 4.220e-7 Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGFGQATP 201
M RR LK+A++ L A ++ AGQF GKI+KA+K HM T ++V ++FR+ +D GF P
Sbjct: 1 MHRRTVLKSAAAASVALAAQSLPNKAAAGQFTGKIKKAIKLHMATGNESVLEKFRMIRDIGFDGVEP 67
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0B442_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 1.530e-6 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 7 RRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGFGQATP 201
RR FLKT+S+L A L + + +F+G+I+KA+KYHM+T + ED+ ++ +D GF P
Sbjct: 7 RRTFLKTSSALTAACLQPAIGAHLRGEEFRGRIKKAVKYHMVTERVSPEDKLKMLQDLGFDGVEP 71
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase-like TIM barrel n=1 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9M739_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 3.940e-6 Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGF 186
M RR LK+A+ A + AS +AG+F GKI+KA+K HM T +V D+FR+ +D GF
Sbjct: 1 MYRRTLLKSAAFSAAAAATSTVASNASAGEFTGKIKKAVKLHMATGDASVLDKFRMIRDLGF 62
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7E133_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 7.350e-6 Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGF 186
MKRR FL T+ +L A S S + A + KI+KA+KYHM+T +V+D+F++ KD GF
Sbjct: 1 MKRRKFLMTSCAL----TMASSTSTIVAAENTDKIKKAVKYHMVTGELSVQDKFQLVKDLGF 58
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8CVQ7_9PLAN) HSP 1 Score: 49.7 bits (117), Expect = 2.640e-5 Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGFGQATP 201
+ RR FL A+S A A AGQF GKI+KA+KYHMIT +V D+F++ K+ GF P
Sbjct: 5 LDRRRFLHVAASAAATSTLAPRIGA--AGQFTGKIKKAVKYHMITEKLSVMDKFKMLKEIGFDGVEP 69
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase-like TIM barrel n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z8C0_9PLAN) HSP 1 Score: 49.7 bits (117), Expect = 2.660e-5 Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 1 MKRRHFLK-TASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGD-TVEDRFRIAKDAGF 186
+ RR FL T ++ A A SQ+ AG+F GKIRKA+KYHMI A + +V ++F++ KD G+
Sbjct: 5 ISRRDFLSATLTTAAAAASGAFVPSQIRAGEFTGKIRKAVKYHMIQAPELSVREKFQMLKDLGY 68
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Sugar (phosphate isomerase/epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7WTH3_9PLAN) HSP 1 Score: 49.3 bits (116), Expect = 3.640e-5 Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 7 RRHFLKTASSLGAGLLAAGS-ASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGF 186
RR FL T + + LAA A++ G+F GKIRKA+KYHMI V D+ R+ KD GF
Sbjct: 5 RRSFLHTTLTTTSTALAANLVANKAQCGEFTGKIRKAVKYHMIADKIPVSDKLRLLKDLGF 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs74917.1.1 >prot_H-canaliculatus_M_contigs74917.1.1 ID=prot_H-canaliculatus_M_contigs74917.1.1|Name=mRNA_H-canaliculatus_M_contigs74917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVback to top mRNA from alignment at H-canaliculatus_M_contigs74917:347..547+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs74917.1.1 ID=mRNA_H-canaliculatus_M_contigs74917.1.1|Name=mRNA_H-canaliculatus_M_contigs74917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74917:347..547+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74917:347..547+ >mRNA_H-canaliculatus_M_contigs74917.1.1 ID=mRNA_H-canaliculatus_M_contigs74917.1.1|Name=mRNA_H-canaliculatus_M_contigs74917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74917:347..547+ (Hapterophycus canaliculatus Oshoro7m male)back to top |