mRNA_H-canaliculatus_M_contigs74917.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74917.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74917.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase-like TIM barrel n=4 Tax=Planctomycetes TaxID=203682 RepID=A0A518LEK7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 4.220e-7
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGFGQATP 201
            M RR  LK+A++    L A    ++  AGQF GKI+KA+K HM T  ++V ++FR+ +D GF    P
Sbjct:    1 MHRRTVLKSAAAASVALAAQSLPNKAAAGQFTGKIKKAIKLHMATGNESVLEKFRMIRDIGFDGVEP 67          
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0B442_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.530e-6
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    7 RRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGFGQATP 201
            RR FLKT+S+L A  L     + +   +F+G+I+KA+KYHM+T   + ED+ ++ +D GF    P
Sbjct:    7 RRTFLKTSSALTAACLQPAIGAHLRGEEFRGRIKKAVKYHMVTERVSPEDKLKMLQDLGFDGVEP 71          
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase-like TIM barrel n=1 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9M739_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.940e-6
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGF 186
            M RR  LK+A+   A    +  AS  +AG+F GKI+KA+K HM T   +V D+FR+ +D GF
Sbjct:    1 MYRRTLLKSAAFSAAAAATSTVASNASAGEFTGKIKKAVKLHMATGDASVLDKFRMIRDLGF 62          
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7E133_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.350e-6
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGF 186
            MKRR FL T+ +L      A S S + A +   KI+KA+KYHM+T   +V+D+F++ KD GF
Sbjct:    1 MKRRKFLMTSCAL----TMASSTSTIVAAENTDKIKKAVKYHMVTGELSVQDKFQLVKDLGF 58          
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8CVQ7_9PLAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.640e-5
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGFGQATP 201
            + RR FL  A+S  A    A       AGQF GKI+KA+KYHMIT   +V D+F++ K+ GF    P
Sbjct:    5 LDRRRFLHVAASAAATSTLAPRIGA--AGQFTGKIKKAVKYHMITEKLSVMDKFKMLKEIGFDGVEP 69          
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Xylose (isomerase-like TIM barrel n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z8C0_9PLAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.660e-5
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 MKRRHFLK-TASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGD-TVEDRFRIAKDAGF 186
            + RR FL  T ++  A    A   SQ+ AG+F GKIRKA+KYHMI A + +V ++F++ KD G+
Sbjct:    5 ISRRDFLSATLTTAAAAASGAFVPSQIRAGEFTGKIRKAVKYHMIQAPELSVREKFQMLKDLGY 68          
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Match: Sugar (phosphate isomerase/epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7WTH3_9PLAN)

HSP 1 Score: 49.3 bits (116), Expect = 3.640e-5
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    7 RRHFLKTASSLGAGLLAAGS-ASQVNAGQFKGKIRKALKYHMITAGDTVEDRFRIAKDAGF 186
            RR FL T  +  +  LAA   A++   G+F GKIRKA+KYHMI     V D+ R+ KD GF
Sbjct:    5 RRSFLHTTLTTTSTALAANLVANKAQCGEFTGKIRKAVKYHMIADKIPVSDKLRLLKDLGF 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74917.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Xylose4.220e-741.79isomerase-like TIM barrel n=4 Tax=Planctomycetes T... [more]
Xylose1.530e-640.00isomerase n=2 Tax=Planctomycetia TaxID=203683 RepI... [more]
Xylose3.940e-645.16isomerase-like TIM barrel n=1 Tax=Stieleria maiori... [more]
Xylose7.350e-645.16isomerase n=1 Tax=Rhodopirellula sp. TaxID=2024855... [more]
Xylose2.640e-544.78isomerase n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
Xylose2.660e-545.31isomerase-like TIM barrel n=1 Tax=Maioricimonas ra... [more]
Sugar3.640e-547.54phosphate isomerase/epimerase n=1 Tax=Planctomycet... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74917contigH-canaliculatus_M_contigs74917:347..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog756272.Plabr_1391
PFAMsAP_endonuc_2
Model size201
Max annot lvl203682|Planctomycetes
KEGG rclassRC00540
KEGG koko:K03079
KEGG ReactionR03244
KEGG Pathwayko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120
KEGG ModuleM00550
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000501
EggNOG OGsCOG1082@1|root,COG1082@2|Bacteria,2IXXX@203682|Planctomycetes
EC5.1.3.22
DescriptionXylose isomerase-like TIM barrel
Cds size201
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.8889315-CDS-H-canaliculatus_M_contigs74917:346..5471696854086.8889315-CDS-H-canaliculatus_M_contigs74917:346..547Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74917 347..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74917.1.1prot_H-canaliculatus_M_contigs74917.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74917 347..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74917.1.1

>prot_H-canaliculatus_M_contigs74917.1.1 ID=prot_H-canaliculatus_M_contigs74917.1.1|Name=mRNA_H-canaliculatus_M_contigs74917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
MKRRHFLKTASSLGAGLLAAGSASQVNAGQFKGKIRKALKYHMITAGDTV
EDRFRIAKDAGFGQATP
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mRNA from alignment at H-canaliculatus_M_contigs74917:347..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74917.1.1 ID=mRNA_H-canaliculatus_M_contigs74917.1.1|Name=mRNA_H-canaliculatus_M_contigs74917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74917:347..547+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAACGCCGACATTTTCTAAAAACTGCTTCATCACTTGGCGCCGGATT GCTGGCTGCCGGATCAGCAAGCCAAGTGAACGCTGGGCAGTTCAAAGGCA AGATTCGCAAGGCACTGAAATATCACATGATCACCGCGGGTGACACAGTG GAAGATCGTTTCCGAATCGCCAAAGATGCTGGCTTCGGTCAAGCAACTCC C
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74917:347..547+

>mRNA_H-canaliculatus_M_contigs74917.1.1 ID=mRNA_H-canaliculatus_M_contigs74917.1.1|Name=mRNA_H-canaliculatus_M_contigs74917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74917:347..547+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAACGCCGACATTTTCTAAAAACTGCTTCATCACTTGGCGCCGGATT
GCTGGCTGCCGGATCAGCAAGCCAAGTGAACGCTGGGCAGTTCAAAGGCA
AGATTCGCAAGGCACTGAAATATCACATGATCACCGCGGGTGACACAGTG
GAAGATCGTTTCCGAATCGCCAAAGATGCTGGCTTCGGTCAAGCAACTCC
C
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