mRNA_H-canaliculatus_M_contigs74903.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74903.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74903.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:   46 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKVENVVRTAYANK 124
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.480e-8
Identity = 25/79 (31.65%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  +Y I++  +   P I+R +VE  +  A A+K
Sbjct:   46 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYDIERESILADPTISRAKVENVVRAAYANK 124
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:   46 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANK 124
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.300e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:   46 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANK 124
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: CCHC-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.390e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:  178 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANK 256
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.400e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:  233 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANK 311
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: CCHC-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:  178 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANK 256
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.440e-8
Identity = 26/79 (32.91%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    7 LNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPEEYAIQKAILREKPNITRRQVEETISNANADK 243
            L  ++   GE  ++FFAR+D ++N ++ VG+EK+ + ++ +++ QL  EY I++  +   P I+R +VE  +  A A+K
Sbjct:  178 LETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANK 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74903.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized1.080e-832.91protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized1.480e-831.65protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized3.240e-832.91protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.300e-832.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
CCHC-type3.390e-832.91domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.400e-832.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
CCHC-type3.420e-832.91domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
CCHC-type3.440e-832.91domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74903contigH-canaliculatus_M_contigs74903:2..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size285
Hectar predicted targeting categoryother localisation
Exons1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.7006152-CDS-H-canaliculatus_M_contigs74903:1..2861696854086.7006152-CDS-H-canaliculatus_M_contigs74903:1..286Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74903 2..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74903.1.1prot_H-canaliculatus_M_contigs74903.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74903 2..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74903.1.1

>prot_H-canaliculatus_M_contigs74903.1.1 ID=prot_H-canaliculatus_M_contigs74903.1.1|Name=mRNA_H-canaliculatus_M_contigs74903.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=95bp
MELNNVQYDQGEPAEMFFARIDTIVNTLRLVGVEKTPKEVLSVMIDQLPE
EYAIQKAILREKPNITRRQVEETISNANADKRVQEMRQKSFASNA
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mRNA from alignment at H-canaliculatus_M_contigs74903:2..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74903.1.1 ID=mRNA_H-canaliculatus_M_contigs74903.1.1|Name=mRNA_H-canaliculatus_M_contigs74903.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74903:2..286+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAGCTCAACAACGTGCAATACGACCAAGGTGAACCCGCCGAGATGTT
TTTCGCGAGGATTGACACAATCGTGAACACGTTACGGCTGGTTGGTGTTG
AGAAGACTCCGAAAGAGGTCCTATCGGTTATGATCGACCAGTTGCCTGAG
GAATATGCAATTCAAAAGGCCATCCTACGCGAGAAGCCAAATATCACAAG
GCGGCAGGTGGAGGAGACTATTAGTAACGCGAATGCGGATAAACGCGTTC
AAGAAATGCGTCAAAAGTCTTTTGCGTCAAATGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74903:2..286+

>mRNA_H-canaliculatus_M_contigs74903.1.1 ID=mRNA_H-canaliculatus_M_contigs74903.1.1|Name=mRNA_H-canaliculatus_M_contigs74903.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74903:2..286+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAGCTCAACAACGTGCAATACGACCAAGGTGAACCCGCCGAGATGTT
TTTCGCGAGGATTGACACAATCGTGAACACGTTACGGCTGGTTGGTGTTG
AGAAGACTCCGAAAGAGGTCCTATCGGTTATGATCGACCAGTTGCCTGAG
GAATATGCAATTCAAAAGGCCATCCTACGCGAGAAGCCAAATATCACAAG
GCGGCAGGTGGAGGAGACTATTAGTAACGCGAATGCGGATAAACGCGTTC
AAGAAATGCGTCAAAAGTCTTTTGCGTCAAATGCT
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