mRNA_H-canaliculatus_M_contigs7490.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7490.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7490.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: UEV (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.950e-11
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   13 KVGSVQVMCPSYGRTGTMSMKTALEILGFGPCYH 114
            K G++QV+CP+YGRTGT S+K ALEILGFGPCYH
Sbjct:  180 KQGTLQVVCPNYGRTGTKSLKAALEILGFGPCYH 213
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sinosporangium siamense TaxID=1367973 RepID=UPI001A39C276)

HSP 1 Score: 53.9 bits (128), Expect = 1.700e-7
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   16 VGSVQVMCPSYGRTGTMSMKTALEILGFGPCYHS 117
            VG+++++   +GRTGT+SMK ALE LGFGPCYH+
Sbjct:    8 VGTLEIIGAGFGRTGTLSMKAALERLGFGPCYHA 41
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4TE16_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-7
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 SVQVMCPSYGRTGTMSMKTALEILGFGPCYHSE 120
            S+QV+ P +GRTGTMS+K AL+ LGFGPC+H E
Sbjct:    2 SLQVIGPGFGRTGTMSLKMALQELGFGPCHHME 34
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EKM6_VITBC)

HSP 1 Score: 53.1 bits (126), Expect = 3.930e-7
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 DPPKKVGSVQVMCPSYGRTGTMSMKTALEILGFGPCYH-SEFGDNDYAPER 150
            D  +  G ++V+   +GRTGTMS+K ALE +G+GPCYH SE   +   P R
Sbjct:   16 DAARDAGGLRVIGAGHGRTGTMSLKAALEAIGYGPCYHFSEVAMDPQVPRR 66
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Sulfotransferase (family protein n=2 Tax=Nonomuraea turkmeniaca TaxID=103838 RepID=A0A5S4EYI3_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 6.310e-7
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 DPPKKVGSVQVMCPSYGRTGTMSMKTALEILGFGPCYH 114
            D  K +G+V+V+   +GRTGT S+K ALE+LG GPCYH
Sbjct:    5 DSVKTIGAVKVIGAGFGRTGTRSLKAALELLGHGPCYH 42
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0V6V4_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 6.640e-7
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   25 VQVMCPSYGRTGTMSMKTALEILGFGPCYHSE 120
            ++V+   +GRTGT+S+K ALEILGFGPCYH E
Sbjct:    1 MKVIGSGFGRTGTLSLKAALEILGFGPCYHME 32
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4A8M6_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 7.370e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   22 SVQVMCPSYGRTGTMSMKTALEILGFGPCYH 114
            S+QV+   +GRTGTMS K ALE+LGFGPCYH
Sbjct:    2 SLQVIGAGFGRTGTMSTKAALEMLGFGPCYH 32
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZXC3_TRICV)

HSP 1 Score: 50.8 bits (120), Expect = 9.730e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   16 VGSVQVMCPSYGRTGTMSMKTALEILGFGPCYH 114
            VG +QV+    GRTGT S+K ALEILGFGPCYH
Sbjct:   15 VGGMQVVGLGPGRTGTDSLKKALEILGFGPCYH 47
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Sulfotransferase (family protein n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MC02_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 9.830e-7
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 SVQVMCPSYGRTGTMSMKTALEILGFGPCYHSE 120
            S++V+ P +GRTGT+S+K ALEIL FGPC+H E
Sbjct:    2 SLEVIGPGFGRTGTLSLKQALEILDFGPCHHME 34
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BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Match: Sulfotransferase (family protein n=1 Tax=Reticulibacter mediterranei TaxID=2778369 RepID=A0A8J3IPU8_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 9.840e-7
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 KKVGSVQVMCPSYGRTGTMSMKTALEILGFGPCYH 114
            +KV  ++++   +GRTGT S+K ALEILGFGPCYH
Sbjct:   14 RKVDGLKIIGAGFGRTGTRSLKEALEILGFGPCYH 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7490.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UEV6.950e-1176.47domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized1.700e-761.76protein n=1 Tax=Sinosporangium siamense TaxID=1367... [more]
Uncharacterized3.680e-766.67protein n=1 Tax=Acidobacteria bacterium TaxID=1978... [more]
Uncharacterized3.930e-747.06protein n=1 Tax=Vitrella brassicaformis (strain CC... [more]
Sulfotransferase6.310e-757.89family protein n=2 Tax=Nonomuraea turkmeniaca TaxI... [more]
Uncharacterized6.640e-765.63protein (Fragment) n=1 Tax=hydrothermal vent metag... [more]
Uncharacterized7.370e-770.97protein n=1 Tax=Congregibacter litoralis KT71 TaxI... [more]
Hypothetical9.730e-769.70protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Sulfotransferase9.830e-763.64family protein n=1 Tax=Hypericibacter terrae TaxID... [more]
Sulfotransferase9.840e-760.00family protein n=1 Tax=Reticulibacter mediterranei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7490contigH-canaliculatus_M_contigs7490:39..188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU57
Preferred nameSTP22
PFAMsUEV,Vps23_core
Model size150
Max annot lvl2759|Eukaryota
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
Exons1
Evalue1.14e-11
EggNOG OGsKOG2391@1|root,KOG2391@2759|Eukaryota
DescriptionTumor susceptibility
Cds size150
COG categoryO
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.66107-CDS-H-canaliculatus_M_contigs7490:38..1881696854086.66107-CDS-H-canaliculatus_M_contigs7490:38..188Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7490 39..188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7490.1.1prot_H-canaliculatus_M_contigs7490.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7490 39..188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7490.1.1

>prot_H-canaliculatus_M_contigs7490.1.1 ID=prot_H-canaliculatus_M_contigs7490.1.1|Name=mRNA_H-canaliculatus_M_contigs7490.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=50bp
DPPKKVGSVQVMCPSYGRTGTMSMKTALEILGFGPCYHSEFGDNDYAPER
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mRNA from alignment at H-canaliculatus_M_contigs7490:39..188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7490.1.1 ID=mRNA_H-canaliculatus_M_contigs7490.1.1|Name=mRNA_H-canaliculatus_M_contigs7490.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7490:39..188+ (Hapterophycus canaliculatus Oshoro7m male)
GATCCTCCCAAGAAGGTAGGCAGCGTGCAGGTGATGTGCCCCAGCTACGG
CCGGACGGGGACCATGTCGATGAAAACTGCCCTCGAGATCCTCGGGTTCG
GACCGTGCTATCATAGTGAGTTTGGAGATAATGACTACGCACCAGAGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7490:39..188+

>mRNA_H-canaliculatus_M_contigs7490.1.1 ID=mRNA_H-canaliculatus_M_contigs7490.1.1|Name=mRNA_H-canaliculatus_M_contigs7490.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=150bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7490:39..188+ (Hapterophycus canaliculatus Oshoro7m male)
GATCCTCCCAAGAAGGTAGGCAGCGTGCAGGTGATGTGCCCCAGCTACGG
CCGGACGGGGACCATGTCGATGAAAACTGCCCTCGAGATCCTCGGGTTCG
GACCGTGCTATCATAGTGAGTTTGGAGATAATGACTACGCACCAGAGAGG
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