mRNA_H-canaliculatus_M_contigs749.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs749.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI) HSP 1 Score: 659 bits (1701), Expect = 4.250e-228 Identity = 415/677 (61.30%), Postives = 470/677 (69.42%), Query Frame = 1
Query: 7 LGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPASSVASAMANAPPLRTCPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGTEAHQQAVAEGLEMPSLSAASSGAGSGSAGGVVRLCGARGLEPALVAAAAGRGGYRAPVLPVVISGGAFSRERGIVHHSSRGLSNLAAFSLPEGARAAVAKCSPRPCYYRIDRDRLFCREAWKPVASEVAAVGASLNDDRGMVLVIEADALSSDDPQGLMSPPAKSAATGARSGGGVGLGGRLGEDQALWGLSMLRRAIEEKRERENSGRVASVLLAERRMAEVEGSTT--VSIDARAALLLSVLSWAQQWAVEGGANDAVSLSSRSSEGSLSRPVDDETETLVHEVAAPKLPENDAAAGSATAMTTAQAEDTAAVFDAEDDAAAPSGEEARGTGEEEEEVLEVR-------DVTTPPDDEDQTVRPSTTARVLGTLEGVGRGVRVAVAPVGRVWSAAGRSLSVAYAWAEERRRRVSPPEDAGVCRRTLLYDTDDDESFRWLAAQMLRTGWTVVRTTSQLGRGCGYLPVLVHRFSDESTLTAAARHVAGDADVCAVVHNWDCAAEARHLLRGAPRSTSGQEPEAQGPRSSAEVICTAEVGEDLFQFVRWQLLSGATTEQVQKGLDELFGAFYEADEE 2010
LGLATSFVFVVGMAEGA VSA+KGDLKFP RYA+YN IPSFVGGKVPASSVASAMA PP+R CPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRG EA+QQAVA+GLE+PS SA SG G GSAGGVVRLCGARGLEPALVA AGRGGYR P+LPVV+SGG F G S + A+ L EGA +AVAK SPRPCYYRI DR+FCREAW+PV S +A GA+ +D R +VLV+EADA+SSD PQ LMSPP + G GRLGEDQA+WGL+MLRRA+EE+R +GR+ASVLLAERR+ EGSTT VSIDARAALLLSVLSWA+Q G +DA++ + +S G+ D E V E A L E+ AG TA A DT F A D+ G + E D T DD++Q ST ARVL LEGVGRGVRVA A +G+V S GRSL AW E RR DAG+ R L+YDTDDDESFRWLAA+ML+ GW + R TS+ R +PVLVH SDE TLTAAA HV A+VCAVVH+WDC EAR LL GA + E A + AEVICTAEVGEDLFQFVRWQLLSGATTEQVQ+GLD+LFGAFYE + E
Sbjct: 31 LGLATSFVFVVGMAEGATVSALKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGMEAYQQAVADGLEVPSWSA--SGFGDGSAGGVVRLCGARGLEPALVAPMAGRGGYRTPILPVVVSGGGFGHRSGGWRSS-----DPASSFLSEGALSAVAKVSPRPCYYRIGGDRVFCREAWQPVVSALAEAGAT-SDSREIVLVMEADAVSSDAPQTLMSPPREV----------KGGEGRLGEDQAVWGLAMLRRALEERRRERGAGRLASVLLAERRLVCAEGSTTTTVSIDARAALLLSVLSWAEQC---HGDDDALADEANASPGNSGSSADGEPAGFVAEPIA--LGEDRDPAGLTTAAAAADKLDTTEGFVAPDE---ELGADTAAVAEXXXXXXXXXXXXGVDGDATARADDDEQGPSASTAARVLVVLEGVGRGVRVAAARLGQVRSTMGRSLGAVSAWLVENGRRRPTTPDAGI-NRVLVYDTDDDESFRWLAAKMLKVGWAIERQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVKGANVCAVVHSWDCGVEARRLLVGARETVLPDEGRA-ARQPCAEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETERE 679
BLAST of mRNA_H-canaliculatus_M_contigs749.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE) HSP 1 Score: 485 bits (1249), Expect = 4.570e-162 Identity = 320/582 (54.98%), Postives = 371/582 (63.75%), Query Frame = 1
Query: 277 FQVALAGGRGTEAHQQAVAEGLEMPSLSAASSGAGSGSAGGVVRLCGARGLEPALVAAAAGRGGYRAPVLPVVISGGAFSRERGIVHHSSRGL--SNLAAFSLPEGARAAVAKCSPRPCYYRIDRDRLFCREAWKPVASEVAAVGASLNDDRGMVLVIEADALSSDDPQGLMSPPAKSAATGARSGGGVGLGGRLGEDQALWGLSMLRRAIEEKRERENSGRVASVLLAERRMAEVEGSTTVSIDARAALLLSVLSWAQQWAVEGGANDAVSLSSRSSEGSLSRPVDDETETLVHEVAAPKLPENDAAAGSATAMTTAQAEDTAAVFDAEDDAAAPSGEEARGTGEEEEEVLEVRDVTTPPDDEDQTVRPSTTARVLGTLEGVGRGVRVAVAPVGRVWSAAGRSLSVAYAWAEERRRRVSPPEDAGVCRRTLLYDTDDDESFRWLAAQMLRTGWTVVRTTSQLGRGCGYLPVLVHRFSDESTLTAAARHVAGDAD--VCAVVHNWDCAAEARHLLRGAPRSTSGQEPEAQGPRSSAEVICTAEVGEDLFQFVRWQLLSGATTEQVQKGLDELFGAFYEADEE 2010
FQVALAGGRG EA+QQAVA+GLE+PS S SG G GSAGGVVRLCGARGLEPALVA AGRGGYR P+LPVV+SGG F H S G S+ A L EGA +AVAK SPRPCYYRI DR+FC+EAW+PV S +A GA+ +D R VLV+EADA+SSD PQ LMSPP + G GRLGEDQA+WGL+MLRRA+EE+R + +GR+ASVLLAERR+ EGS VSIDARAALLLSVL WA Q G +DA++ DE T E A G + DTAAV + E+D G D T DD++Q ST RVL LE +GRGVRVA A +G+V SA GRSL AW + RR DA + +R L+YDT DDESFRWLAA+ML+ GWTV R TS+ R +PVLVH SDE TLTAAA HV A+ VCAVVHNWDC EAR LL A + E A + S EVICTAEVGEDLFQFVRWQLLSGATT+QVQ+GLD+LFGAFYE ++E
Sbjct: 11 FQVALAGGRGMEAYQQAVADGLEVPSFSP--SGFGDGSAGGVVRLCGARGLEPALVAPVAGRGGYRTPILPVVVSGGGF-------RHRSGGWRSSDPAPCFLSEGALSAVAKVSPRPCYYRIGGDRVFCQEAWQPVVSALAEAGAT-SDSRERVLVMEADAVSSDAPQALMSPPREV----------EGGEGRLGEDQAVWGLAMLRRALEERRREQGAGRLASVLLAERRLVCAEGS--VSIDARAALLLSVLCWAGQCQ---GDDDALA---------------DEATTAAAVAGVLGTTEGSVAPGEESGA------DTAAVAEEEEDTMGVDG-----------------DATARADDDEQGRPASTAVRVLVVLERMGRGVRVAAARLGQVRSAMGRSLGAVSAWLAKNARRRPTTPDAAI-KRVLVYDTHDDESFRWLAAKMLKVGWTVERQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVEGANGKVCAVVHNWDCGVEARRLLVEARETVLPNEGRA-ARQPSVEVICTAEVGEDLFQFVRWQLLSGATTDQVQQGLDDLFGAFYETEQE 527
BLAST of mRNA_H-canaliculatus_M_contigs749.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z0_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.850e-41 Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 7 LGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPASSVASAMANAPPLRTCPRAAAHAANLRALRTAVAGYTVLSVVFQV 285
LGLATSFVFVVGMAEGA VS VKGDLKFP RYA+YN IPSFVGGKVPASSVASAMA PP+R CPRAAAHAANLRALRTAVAGYTVLSVVFQV
Sbjct: 31 LGLATSFVFVVGMAEGATVSTVKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQV 123
BLAST of mRNA_H-canaliculatus_M_contigs749.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR3_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.320e-6 Identity = 63/172 (36.63%), Postives = 85/172 (49.42%), Query Frame = 1
Query: 7 LGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPASSVASAM---ANAPPLRTCPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGTEAHQQAVAEGLEM--PSLSAASSGAGSGSAGGVVRLCGARGLEPALVAAAAGRGGYRAPVLPVVISGG 507
LG A +F VG EGA +A +KF YA N +PSFVG K+ AS+VA+ + A L P AA A RA+RT VA +T +SVV ++A G + + V G + PS +SG VRLC + G A+ +GG LPV++SGG
Sbjct: 14 LGSAAAFTLAVGTLEGACAAAPAARVKFAPAYAAANMLPSFVGQKISASTVAALLRMDAATALLAHTPNAALQMAVCRAVRTGVAAFTGVSVVLKMAQRAGCERDRQLELVRSGAALVNPSRFVDASGVQR------VRLCDSSGFARAVT-----QGG----ALPVLVSGG 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs749.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs749.4.1 >prot_H-canaliculatus_M_contigs749.4.1 ID=prot_H-canaliculatus_M_contigs749.4.1|Name=mRNA_H-canaliculatus_M_contigs749.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=677bp AGLGLATSFVFVVGMAEGARVSAVKGDLKFPIRYAMYNAIPSFVGGKVPAback to top mRNA from alignment at H-canaliculatus_M_contigs749:7295..11515- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs749.4.1 ID=mRNA_H-canaliculatus_M_contigs749.4.1|Name=mRNA_H-canaliculatus_M_contigs749.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4221bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs749:7295..11515- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs749:7295..11515- >mRNA_H-canaliculatus_M_contigs749.4.1 ID=mRNA_H-canaliculatus_M_contigs749.4.1|Name=mRNA_H-canaliculatus_M_contigs749.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=2031bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs749:7295..11515- (Hapterophycus canaliculatus Oshoro7m male)back to top |