mRNA_H-canaliculatus_M_contigs749.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs749.2.1
Unique NamemRNA_H-canaliculatus_M_contigs749.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs749.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF11_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 2.320e-87
Identity = 176/302 (58.28%), Postives = 197/302 (65.23%), Query Frame = 2 
Query:   53 MFSVRVVRGTGVVQRGLWSSSSGSGSTCPT------RAAGARGSTASVGSWTSLMAIRGTAAVSTHGYEGTRAAIPSAGAAALGLHQGRHLSDRSTGGGRXXXXXMGPFDTGRR--TVAETGDVKDGEEKEAYEFLSKDDLGRLSSQRKAEGAIKPGTAAGTAATTEEKEETGSVTLWQRWKNARAKMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQNTIKTNPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKVKS 934
            M  V + RG GV QRGL   S   GS C +      RA     S AS GS +S  A R +A VS H  E  R  +      A+ L   +HLS    GG        G  D  RR  T               Y FL KDDLGRLS++ K+   +K  TAA   A  EEK +  +VTLWQRWK ARAKMKLLWKQYGLVWIGTYTVLYFGGLAG+YVVLDTGLVASDVDTS AIQ++AD +GAQDN +V WLQNTIKTNPKANTLLKAVIVNEL+EYPRDIVAIAATPSIARA+GRAPPK K+
Sbjct:    3 MAMVALRRGAGVFQRGLRQQSRPRGSACLSQQAKVPRACNTAVSVASFGSRSSPTAGRWSACVSVHRNEDLRPLVSPVVPVAVALRSVQHLSSSGRGG----REKRGGADKRRRSNTXXXXXXXXXXXXXXEYTFLEKDDLGRLSNEPKS--GLKTDTAAARGA--EEKVDATNVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKAKT 296
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BLAST of mRNA_H-canaliculatus_M_contigs749.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 1.480e-6
Identity = 43/142 (30.28%), Postives = 67/142 (47.18%), Query Frame = 2 
Query:  563 QRWKNARAKMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQNTIKT----------------NPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKVKS*K 940
            ++ K+  +K+K LW+QYG+V +GTY  +YF  L  +YV ++ G V+    T    +   +   A  + NV    N + T                N K  + + A +  +  E  R  V +A TP IAR +GRAP   K+ K
Sbjct:   87 EKGKSGWSKLKELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVS----TKRTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRVNAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAPKLPKAPK 224
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BLAST of mRNA_H-canaliculatus_M_contigs749.2.1 vs.
Match: DUF1279 (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.770e-6
Identity = 39/121 (32.23%), Postives = 60/121 (49.59%), Query Frame = 2 
Query:  587 KMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNAN--VKWLQN--------TIKTNPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAP 919
            ++K LW++YG V +GTY  LY   L  +Y+ +D G V +D   ++  +   +        N  VKW ++          + N K  + L A I  +  E  R  + +AATP IAR +GRAP
Sbjct:   92 RLKDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENFDLVSTTNKFVKWAEDLGIAQYLEVERVNAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAP 212
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs749.2.1 vs.
Match: DUF1279 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.950e-6
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:  572 KNARAKMKLLWKQYGLVWIGTYTVLYFGGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQN-------TIKTNPKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKV 928
            K +  +++ LW++YG V IGTY  +YFG +A  Y + D G++ S      A   V + +     +  +W Q         +  + +A + + A    ++LE  R + AIA TP +ARA+GRAP KV
Sbjct:  324 KESSNRLQDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTSLPSGGTA---VIEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAKV 446
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs749.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.320e-8758.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.480e-630.28protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
DUF12791.770e-632.23domain-containing protein n=1 Tax=Hyaloperonospora... [more]
DUF12796.950e-632.54domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs749contigH-canaliculatus_M_contigs749:3385..6513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra77259
PFAMsDUF1279
Model size1112
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons5
Evalue5.22e-08
EggNOG OGs2CK7H@1|root,2S0QZ@2759|Eukaryota,3QC55@4776|Peronosporales
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-21_006290.1
DescriptionProtein of unknown function (DUF1279)
Cds size885
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs749.2.1prot_H-canaliculatus_M_contigs749.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs749 3437..6338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.4422095-UTR-H-canaliculatus_M_contigs749:3384..34361696854086.4422095-UTR-H-canaliculatus_M_contigs749:3384..3436Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs749 3385..3436 +
1696854086.5240746-UTR-H-canaliculatus_M_contigs749:6338..65131696854086.5240746-UTR-H-canaliculatus_M_contigs749:6338..6513Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs749 6339..6513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.4586072-CDS-H-canaliculatus_M_contigs749:3436..35671696854086.4586072-CDS-H-canaliculatus_M_contigs749:3436..3567Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 3437..3567 +
1696854086.4706762-CDS-H-canaliculatus_M_contigs749:4128..44201696854086.4706762-CDS-H-canaliculatus_M_contigs749:4128..4420Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 4129..4420 +
1696854086.4842157-CDS-H-canaliculatus_M_contigs749:4782..48651696854086.4842157-CDS-H-canaliculatus_M_contigs749:4782..4865Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 4783..4865 +
1696854086.4952614-CDS-H-canaliculatus_M_contigs749:5436..55841696854086.4952614-CDS-H-canaliculatus_M_contigs749:5436..5584Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 5437..5584 +
1696854086.5088553-CDS-H-canaliculatus_M_contigs749:6107..63381696854086.5088553-CDS-H-canaliculatus_M_contigs749:6107..6338Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 6108..6338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs749.2.1

>prot_H-canaliculatus_M_contigs749.2.1 ID=prot_H-canaliculatus_M_contigs749.2.1|Name=mRNA_H-canaliculatus_M_contigs749.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=295bp
MFSVRVVRGTGVVQRGLWSSSSGSGSTCPTRAAGARGSTASVGSWTSLMA
IRGTAAVSTHGYEGTRAAIPSAGAAALGLHQGRHLSDRSTGGGRGRGRGM
GPFDTGRRTVAETGDVKDGEEKEAYEFLSKDDLGRLSSQRKAEGAIKPGT
AAGTAATTEEKEETGSVTLWQRWKNARAKMKLLWKQYGLVWIGTYTVLYF
GGLAGVYVVLDTGLVASDVDTSAAIQLVADQLGAQDNANVKWLQNTIKTN
PKANTLLKAVIVNELLEYPRDIVAIAATPSIARAIGRAPPKVKS*
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mRNA from alignment at H-canaliculatus_M_contigs749:3385..6513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs749.2.1 ID=mRNA_H-canaliculatus_M_contigs749.2.1|Name=mRNA_H-canaliculatus_M_contigs749.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3129bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs749:3385..6513+ (Hapterophycus canaliculatus Oshoro7m male)
GGGGAGGTGGACGTGTTGTGTTCTACTGCATCCTATTGGGTGCCCACGTG
CGATGTTTTCCGTGCGAGTAGTACGTGGGACTGGTGTGGTACAGCGAGGT
CTCTGGAGCAGTAGTTCAGGAAGCGGTTCCACATGTCCTACAAGAGCAGC
AGGAGCCAGGGGCTCGACCGCCAGTGTCGGCAGGTGAGAAAGGACGCCCG
CTGCGAACCACTACTCCCGGCGAAGTCCAAACACTGAGTGAGCGTAGTCC
ATCCCGTTGGGGGAAAATGGCAAGCAGCCAGCCTCGCGACATAATCAAGT
TTTGATATCCTGGCCTCTGGTGAGAGTCATGCCGCGATTGCGCGTCGTTT
GGTTTTTTCTCAGGAGGCGCAGCAGGCTTTCAGATCTGCCGTAGCACTTC
ACGGCGACGAAGGTGGTTGCGTGCCTATAGGAGGTTAGCTGCGCCAGCGC
GTAGGTAAAAGATTTAAGTGTCAGGAGTTGTGATGCGCTTGACATCCGTC
GCCAAACCGCAAAGGATCAACAGCACGCATCCGACACTGGAAATGAGACC
AACCCTCCTGATACCCACGCTCTCCGCGCTCCCGTTGTATGCGCGTGTGC
TGTCATCCCATTTTTAGTGGATCGCTCGACATCTTTGCAATACAATTTGT
ATTTCTTGTCCCCACCCGGGATCGCACGGGGAGTTTAGTTTTGCACAATT
GAATGTAAACTTACTGCTTTCGTCACATGTCCCCCTCGCAACAGCTGGAC
CTCGCTCATGGCTATCAGGGGCACTGCTGCAGTGTCCACGCATGGATACG
AAGGTACTAGAGCAGCGATACCGTCGGCAGGAGCGGCAGCGCTGGGGCTG
CACCAAGGGCGGCACTTGTCTGATCGCTCAACCGGAGGAGGACGAGGAAG
AGGAAGGGGCATGGGCCCGTTTGATACGGGGCGAAGAACTGTCGCCGAGA
CTGGGGATGTTAAGGATGGCGAGGAGAAGGAGGCTTACGAGTTCCTCTCG
AAGGACGATCTCGGCAGACTGTCCAGCCAGAGGAAGGCGAGTGTCAACGA
AAATGGGACAGATTATGCCCGGTTTCCATCCGACTCCGGTGTTGTTCGTC
TTTTCGCAGGCTTTGTTTATAGGACGTTACCGACAGCCCCCTACGCGAAA
GTTGCTGCGTTTCTGCGAGCGAAGCCGATTGCATTGCATGCGCACCGGAC
GCAAAAAAGACCGCCCTCGGCTCCCCTTACAGCCGTCCGATCTACACTAA
CGCTTTATGTTGCACACCACGTGCCGAATTTGTGTAGAAGCATGTGGCGA
ATTTGTCCCCAGCAGGTTTCTCGGTTCACCCCGGGAAGGCGGATGTGAAG
TTTGTTGTCGCCATGCCTCATGCCACCAGTCACTGCGTTGTCCGACAGGC
CGAGGGTGCGATCAAGCCGGGCACAGCCGCAGGCACGGCGGCAACCACGG
AGGAAAAGGAGGAAACCGGAAGCGTGACCTTGTGAGTGCCGTGGAAGTAG
CGTTACAACACACGAACCTTCGCCCAGCACCACCGGTGCAAGCAGCCGGG
TTAAGTCGCACGCACAGTAGTGCAGAATTCAAGTTGCGTCTGCGCCGATC
GGCATTGAGTGAGCTTGCGGGTTTGCTTGTGAAGGTAATACCCTTGGTTC
GTCGTGATTGTCTCTCCTACCGGGGAGGTCCTCCTTGCGCCTACAGCCGC
GGTTCCTTTTGGGTGTACAAGACCGGTCTTTCTCCGGTGGTCTAGCAGCA
GCTTCGTTCATAGCAGCAGCCGTGGCAGTGGCGGCATTGCCGATGGTAGT
GCACGAGGCCACCAAAAGTATTTTGAACACCGCCTTCGTCCACCCTACGA
GGAAAGTCGCGACTACGCAACGGACACACCATCAGCATCACTCACGGCCT
TGAGCGCATGACGAGCGACCTTGTTTTGATGTGTTTCGTGAGAATTGGGT
TGGGGTGATGAACCAATACGCGAGTCTCTGAATAGAGGCGCACTTCGCTG
CTCTGGTTATGCCGCTGCTGCCGTCTTCACGTAATCTTCGCTGCAAGAAC
AGGTGGCAGCGCTGGAAGAATGCAAGGGCCAAGATGAAATTGCTCTGGAA
GCAGTACGGTCTCGTATGGATTGGGACATACACAGTTCTCTACTTTGGGG
GGCTCGCTGGGGTCTACGTGGTATTGGATACGGGCCTTGTGGCGTCGGAT
GTGAGTCTTGAAAAATTATGCTCGGGGCATGCCCAGCACTGCTGTGTAGG
CAGCAATGAGATGTCATTCATGCGCTGGAGTCTTGGCCTTGGTGTTGCAT
TTTGGCCTAAACAACATAGCCACGTACTTTTAAGCGAACGAAACACTTGC
GGTTTAGTCTATATTCCTCGCAAGTGGATTTGGGCAAAAACGGCCTCTTG
AAATTCGGGAAAGCACTTGAACAGCTCCTCTATCCTTCGCCGTTACCGCC
TGGCCGTTTCTGCCGGGGAGGAACCGGCTGGTGTGTTGGAGCCCCCTATC
ATGTCTTCTTGCCCTGTATGTATCGTTGGCGCAAGAGGACTGCGTCCTCC
TCGTTCGGGTAGCGACAAATCTGAATGTATGGTGGCCGGAAGTGCTTGTG
CCAGATAGTGGTTGTCGGGCACGTGCGATGCATGGACAAAGCACAAGCAA
AATTCCATCGAGGAACCAGTTCTTTAGAATAGTACCTTTTGAACGATGAT
CCGACTACTCGTGGACCCTTCAGGTGGACACATCTGCAGCGATCCAACTC
GTCGCAGACCAGCTCGGCGCTCAAGATAACGCCAACGTCAAGTGGCTCCA
GAACACCATCAAGACGAACCCGAAGGCTAACACTCTCCTCAAAGCCGTCA
TCGTCAACGAGCTCCTCGAGTACCCCCGAGACATAGTAGCCATTGCAGCG
ACACCGTCCATTGCGCGCGCCATTGGCCGAGCTCCACCCAAGGTTAAGAG
CTGAAAAGGGTAGACCTCGTACATGAGGCCAAGTTGATATTTTGCGCCTC
GGGTCTCAGTGGCATTGCTGGGGTCCCTGCATTTTTGTTGCAGGCTAGAG
GAGCTTCATTGGACTATTTTGGAACATTAAGACCTTGTGCGATCCGCGTT
TTCATTGCATTTCAATCATTTATTTCTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs749:3385..6513+

>mRNA_H-canaliculatus_M_contigs749.2.1 ID=mRNA_H-canaliculatus_M_contigs749.2.1|Name=mRNA_H-canaliculatus_M_contigs749.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=885bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs749:3385..6513+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTTTCCGTGCGAGTAGTACGTGGGACTGGTGTGGTACAGCGAGGTCT
CTGGAGCAGTAGTTCAGGAAGCGGTTCCACATGTCCTACAAGAGCAGCAG
GAGCCAGGGGCTCGACCGCCAGTGTCGGCAGCTGGACCTCGCTCATGGCT
ATCAGGGGCACTGCTGCAGTGTCCACGCATGGATACGAAGGTACTAGAGC
AGCGATACCGTCGGCAGGAGCGGCAGCGCTGGGGCTGCACCAAGGGCGGC
ACTTGTCTGATCGCTCAACCGGAGGAGGACGAGGAAGAGGAAGGGGCATG
GGCCCGTTTGATACGGGGCGAAGAACTGTCGCCGAGACTGGGGATGTTAA
GGATGGCGAGGAGAAGGAGGCTTACGAGTTCCTCTCGAAGGACGATCTCG
GCAGACTGTCCAGCCAGAGGAAGGCCGAGGGTGCGATCAAGCCGGGCACA
GCCGCAGGCACGGCGGCAACCACGGAGGAAAAGGAGGAAACCGGAAGCGT
GACCTTGTGGCAGCGCTGGAAGAATGCAAGGGCCAAGATGAAATTGCTCT
GGAAGCAGTACGGTCTCGTATGGATTGGGACATACACAGTTCTCTACTTT
GGGGGGCTCGCTGGGGTCTACGTGGTATTGGATACGGGCCTTGTGGCGTC
GGATGTGGACACATCTGCAGCGATCCAACTCGTCGCAGACCAGCTCGGCG
CTCAAGATAACGCCAACGTCAAGTGGCTCCAGAACACCATCAAGACGAAC
CCGAAGGCTAACACTCTCCTCAAAGCCGTCATCGTCAACGAGCTCCTCGA
GTACCCCCGAGACATAGTAGCCATTGCAGCGACACCGTCCATTGCGCGCG
CCATTGGCCGAGCTCCACCCAAGGTTAAGAGCTGA
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