mRNA_H-canaliculatus_M_contigs74899.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs74899.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs74899.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.000e-50
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFSVSAGVGWLVG 315
            KGLAAYALGASLLQSGV+GKQ  LFV+AFS MTPLGILLG LIEKDGEDDS GAVCVALAAGTFLYVSLMEVLP ELAS  +GW+K+GSL+ GF VSAGVGWLVG
Sbjct:  295 KGLAAYALGASLLQSGVYGKQVTLFVIAFSAMTPLGILLGALIEKDGEDDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFVVSAGVGWLVG 399

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 9.180e-45
Identity = 76/105 (72.38%), Postives = 91/105 (86.67%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFSVSAGVGWLVG 315
            KG+A YALGA+LLQSGVH KQ  L++LAFS MTPLGIL+G +I++D ++DS GAVCVALAAGTFLYVSLMEVLP ELAS  +GW+K+GSL+ GF V+ GVGWLVG
Sbjct:  249 KGIAGYALGAALLQSGVHAKQVTLYILAFSAMTPLGILIGAIIQQDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFLVATGVGWLVG 353

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AZN8_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.410e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFSV 288
            KGLAAYALGAS+++SG   ++    +  FS  TPLGI  GY +     + ++GA   ALA+GTFLYV+ MEV+P ELA  +H  AK+ + L G+S+
Sbjct:  321 KGLAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRMAKMAAFLLGYSL 416

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GAD1_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 2.050e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFSV 288
            KGLAAYALGAS+++SG   ++    +  FS  TPLGI  GY +     + ++GA   ALA+GTFLYV+ MEV+P ELA  +H  AK+ + L G+S+
Sbjct:  332 KGLAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRLAKMAAFLLGYSL 427

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4D4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.480e-18
Identity = 43/84 (51.19%), Postives = 63/84 (75.00%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGA-VCVALAAGTFLYVSLMEVLPSELASPRHG 249
            KGLAA+ALG+ L+QS +      L+++ FS M+ +GI++G++I  D  +DSA A +CVALA+GTF+YV++MEV+P E   PRHG
Sbjct:  223 KGLAAFALGSGLVQSAMPAAHVMLYMVVFSFMSIIGIIVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEF--PRHG 304

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GT88_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.630e-18
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGA-VCVALAAGTFLYVSLMEVLPSELASPRHG 249
            KGLAA+ALG+ L+QS +   Q  L+++ FS M+ +GI++G++I  D  +DSA A +CVALA+GTF+YV++MEV+P E     HG
Sbjct:  193 KGLAAFALGSGLVQSAMPVAQVTLYMVVFSFMSIIGIIIGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHG 276

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GMX7_GONPE)

HSP 1 Score: 85.5 bits (210), Expect = 2.400e-17
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFSV 288
            KGLAAYALGAS+++SG    +    +  FS  TP+GI  GY +       S GA   ALA+GTFLYV+ MEV+P ELA  RH  AK+G+ L G+ +
Sbjct:  312 KGLAAYALGASIVESGASSNRFWTVIGCFSMATPIGIFAGYGMSSAASSKS-GAALSALASGTFLYVAFMEVIPKELADGRHRAAKMGAFLLGYGL 406

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWH9_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 2.910e-17
Identity = 44/104 (42.31%), Postives = 70/104 (67.31%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGA-VCVALAAGTFLYVSLMEVLPSELA-------SPRHGWAKIGSLLAGFSV 288
            KGLAA+ALG+ L+QS +      L+++ FS M+ +GI++G++I  D  +DSA A +CVALA+GTF+YV++MEV+P E          P+H   K+ +L  G+++
Sbjct:  234 KGLAAFALGSGLVQSSLKTSHVILYMVVFSFMSIIGIIIGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSGGSHKPQHTTQKMIALCLGYAI 337

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Zinc ((Zn2)-Iron (Fe2) Permease (ZIP) family n=15 Tax=Phytophthora TaxID=4783 RepID=D0NNK1_PHYIT)

HSP 1 Score: 84.3 bits (207), Expect = 3.510e-17
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGA-VCVALAAGTFLYVSLMEVLPSELASPRHG 249
            KGLAA+ALG+ L+QS +      L+++ FS M+ +GI++G++I  D  +DSA A +CVALA+GTF+YV++MEV+P E     HG
Sbjct:  213 KGLAAFALGSGLVQSAMPATHVMLYMVVFSFMSIIGIIVGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHG 296

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BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Match: Zinc/iron (permease n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLB6_COCSC)

HSP 1 Score: 84.3 bits (207), Expect = 6.400e-17
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1

Query:    1 KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDDSAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFS 285
            KGLAAYALG+S++ S    ++    +  F+  TP+GILLG ++      D+A +V  ALA+GTFLYV+ MEV+P ELA P H  AK+  LLAGF+
Sbjct:  317 KGLAAYALGSSVVDSQASMRKFWTVIGFFASATPVGILLGVVLSSVSNSDAAASVS-ALASGTFLYVAFMEVIPRELAMPSHRTAKLVMLLAGFA 410

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs74899.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.000e-50	84.76	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8...	[more]
Uncharacterized	9.180e-45	72.38	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7...	[more]
Uncharacterized	1.410e-18	47.92	protein n=1 Tax=Volvox africanus TaxID=51714 RepID...	[more]
Uncharacterized	2.050e-18	47.92	protein n=1 Tax=Volvox reticuliferus TaxID=1737510...	[more]
Uncharacterized	7.480e-18	51.19	protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID...	[more]
Uncharacterized	7.630e-18	50.00	protein n=3 Tax=Phytophthora kernoviae TaxID=32545...	[more]
Uncharacterized	2.400e-17	48.96	protein n=1 Tax=Gonium pectorale TaxID=33097 RepID...	[more]
Uncharacterized	2.910e-17	42.31	protein n=1 Tax=Globisporangium ultimum (strain AT...	[more]
Zinc	3.510e-17	48.81	(Zn2)-Iron (Fe2) Permease (ZIP) family n=15 Tax=Ph...	[more]
Zinc/iron	6.400e-17	49.47	permease n=1 Tax=Coccomyxa subellipsoidea (strain ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs74899	contig	H-canaliculatus_M_contigs74899:43..360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D7FLN8
PFAMs	Zip
Model size	318
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14709
KEGG TC	2.A.5.1,2.A.5.3,2.A.5.6
Hectar predicted targeting category	signal peptide
Exons	1
Evalue	1.65e-51
EggNOG OGs	KOG1558@1\|root,KOG1558@2759\|Eukaryota
Description	zinc ion transmembrane transporter activity
Cds size	318
COG category	U
BRITE	ko00000,ko02000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854086.2837806-CDS-H-canaliculatus_M_contigs74899:42..360	1696854086.2837806-CDS-H-canaliculatus_M_contigs74899:42..360	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs74899 43..360 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs74899.1.1	prot_H-canaliculatus_M_contigs74899.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs74899 43..360 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs74899:43..360+
coding sequence from alignment at H-canaliculatus_M_contigs74899:43..360+

protein sequence of mRNA_H-canaliculatus_M_contigs74899.1.1

>prot_H-canaliculatus_M_contigs74899.1.1 ID=prot_H-canaliculatus_M_contigs74899.1.1|Name=mRNA_H-canaliculatus_M_contigs74899.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=106bp
KGLAAYALGASLLQSGVHGKQSALFVLAFSGMTPLGILLGYLIEKDGEDD
SAGAVCVALAAGTFLYVSLMEVLPSELASPRHGWAKIGSLLAGFSVSAGV
GWLVG*

mRNA from alignment at H-canaliculatus_M_contigs74899:43..360+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs74899.1.1 ID=mRNA_H-canaliculatus_M_contigs74899.1.1|Name=mRNA_H-canaliculatus_M_contigs74899.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=318bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74899:43..360+ (Hapterophycus canaliculatus Oshoro7m male)
AAGGGCCTAGCCGCGTACGCCCTGGGGGCGTCGCTCCTTCAGAGCGGCGT
CCACGGCAAGCAGTCAGCGCTTTTCGTGCTCGCCTTCTCGGGGATGACCC
CGCTGGGCATCCTGCTGGGGTACCTGATCGAGAAGGACGGCGAGGACGAC
AGCGCCGGGGCGGTCTGCGTGGCCCTCGCGGCGGGCACCTTCCTGTACGT
GTCCCTGATGGAGGTGCTGCCGTCGGAGCTGGCGTCGCCTCGGCACGGTT
GGGCGAAGATCGGGTCGCTGCTGGCCGGGTTCTCGGTGTCGGCCGGTGTC
GGGTGGCTTGTCGGGTGA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74899:43..360+

>mRNA_H-canaliculatus_M_contigs74899.1.1 ID=mRNA_H-canaliculatus_M_contigs74899.1.1|Name=mRNA_H-canaliculatus_M_contigs74899.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=318bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74899:43..360+ (Hapterophycus canaliculatus Oshoro7m male)
AAGGGCCTAGCCGCGTACGCCCTGGGGGCGTCGCTCCTTCAGAGCGGCGT
CCACGGCAAGCAGTCAGCGCTTTTCGTGCTCGCCTTCTCGGGGATGACCC
CGCTGGGCATCCTGCTGGGGTACCTGATCGAGAAGGACGGCGAGGACGAC
AGCGCCGGGGCGGTCTGCGTGGCCCTCGCGGCGGGCACCTTCCTGTACGT
GTCCCTGATGGAGGTGCTGCCGTCGGAGCTGGCGTCGCCTCGGCACGGTT
GGGCGAAGATCGGGTCGCTGCTGGCCGGGTTCTCGGTGTCGGCCGGTGTC
GGGTGGCTTGTCGGGTGA