mRNA_H-canaliculatus_M_contigs7488.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7488.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7488.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7488.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7488contigH-canaliculatus_M_contigs7488:1776..4938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size927
Hectar predicted targeting categoryother localisation
Exons4
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.1864061-CDS-H-canaliculatus_M_contigs7488:1775..18331696854086.1864061-CDS-H-canaliculatus_M_contigs7488:1775..1833Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7488 1776..1833 -
1696854086.196728-CDS-H-canaliculatus_M_contigs7488:2321..27911696854086.196728-CDS-H-canaliculatus_M_contigs7488:2321..2791Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7488 2322..2791 -
1696854086.206254-CDS-H-canaliculatus_M_contigs7488:3224..35441696854086.206254-CDS-H-canaliculatus_M_contigs7488:3224..3544Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7488 3225..3544 -
1696854086.21531-CDS-H-canaliculatus_M_contigs7488:4859..49381696854086.21531-CDS-H-canaliculatus_M_contigs7488:4859..4938Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7488 4860..4938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7488.1.1prot_H-canaliculatus_M_contigs7488.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7488 1776..4938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7488.1.1

>prot_H-canaliculatus_M_contigs7488.1.1 ID=prot_H-canaliculatus_M_contigs7488.1.1|Name=mRNA_H-canaliculatus_M_contigs7488.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=309bp
GAGAEIDFDFKILADYLTEEGQYGGGDVAVPTAANAFSAAPAVQQGLHAL
GGGDGGGGGGLLGFNFAAHLNARMGWGAGALAGGLPIQDQQRRQQQLQPH
LYPSSPGGPFMGMGMGMGMGMGMGLGMGMPPSQQWRLATRFARAHPQPFF
SPTAAAAAPVVAMGMGLPQQQMPGATGVATVGAASGGVFGAGPAGLVSPA
GAVMPAAATAGASTGTPTEAVLQPLGGSLAGAGAVVMSARGAAKAEGAVA
GGLAVAPPLAPAATKDKRRRRPERSTDADKKAQEQIVRRRERNRVLARQT
RMRKKFFYQ
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mRNA from alignment at H-canaliculatus_M_contigs7488:1776..4938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7488.1.1 ID=mRNA_H-canaliculatus_M_contigs7488.1.1|Name=mRNA_H-canaliculatus_M_contigs7488.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3163bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7488:1776..4938- (Hapterophycus canaliculatus Oshoro7m male)
GGAGCAGGAGCGGAAATCGACTTTGATTTTAAAATACTTGCCGACTATCT
TACGGAGGAGGGGCAGTACGGCGGTGGGGGTGAGAGAGCGTTCCAACAAT
TATTTGGTAGGCGAACGACCATAAAAAAAAGGTGCCGATAGGTTGCGATC
CCCGATCCCTCTGCCACTACTCAGTGCTGCTGTAGACGATACGAGCAGTA
ACCCTGTGAGCCTGGGAGAACATCGTCCATTCTCAGATTGACGAAGACAA
GCGGCAGAATGAAAAGGGGGGGGGCTAGGATCCAAAATCCATCCACGTTT
GTACATGTTTGCATCCGTCGACCCAGCCCAAATGACCCCTCCATTGAGAT
ACATGTATACTGCAACAAGGCGCAGACGCAGAGAGAGGGAAACGGTGAAG
AGCTTCACTACCACTCCGTCCTGTCGTGCGTCTTTGTCCTTGACCCGAAA
TATCGTGCGTTCGAATATTCTCGGTAAGGTCATACCTGGTAGGTGTTTAG
TCGAGAGAAATGACCATGCTTGACTCGTCCTCTAAGCAAGCCGTGTCCTC
GTGTATGTAGTATGTCTACGTGTGTGTGTCTCCTCGACTTCCGGCGCCCG
TGGCGAACGTCAGCCGTCTCGTCTCACGGAGTACGGAGCATTGGCGTTCC
ATGGTCGTCCAAGGAGGATGCGCGCAAGCATACATACCTTACTGTGTTCA
TTCATGGACATTCTGTCGTAGCGACGAAGAGCAAGAAGAGGCAGCAACAC
GAAGGGACTCTTTTTTTTCTTTCATCCTGTACAACTGCGCGATGGTGCAT
GGAAAACGCTCGGCGAACATCACCAACTCCTTCATTTTTTCTTCTTTCTC
GAATACCTCTTGCAGCAAATATTGAAGGGTACAATTACGAAGTACATGTA
TGTGATAGCCCAGATATACCATCCACTTTTCAAGCTGTTCAAGCAATTCG
GCGGTTTGCCGTGGACTCGGGTAGTAGGTAAGCGTCTGTGACCATGGCCC
GGCCAGAAGTATGAGATTGAGGGTCAAACCGGCGATCCGGGGGGTGTTCG
AGGTTCGAGGTTCCCTCGGTGAATCCAGTGTAACGTCTTGGGGACCGTTT
TCGTTCATGATGGGCGGGATCGACCGGGATAGGCCTGCATCAAACCTTTG
TGCGTCCCACAAAGCCGCTGATGTGTCGATCTGCCCGCTGTAGTCTCGAG
CGATCTTGGGCGAGACGGACGAAAGTAGCCCCGAAAAGTTTCACCATTGC
GAAGGGAGACAGCGCCTCATTTGCCCGCGAGGGTGGGTGTGACCTCCCCA
GGCCTCCCCCCTTCCCCTCCTCACCCCAACCCCCCCATTCGACCCTCGTG
CTGTCTGCCACGACGAAACGTCATTACGGACGATAAAAACGAAGACGTCG
CTGTGCCAACGGCCGCCAACGCCTTCAGCGCGGCCCCCGCAGTCCAACAG
GGTTTGCATGCGCTGGGTGGCGGCGATGGCGGCGGTGGCGGAGGTTTGCT
GGGGTTCAACTTCGCCGCCCACCTCAACGCCAGGATGGGCTGGGGGGCCG
GGGCTCTAGCGGGAGGGTTGCCCATCCAAGATCAGCAGCGGCGGCAGCAG
CAGTTGCAGCCGCACTTGTACCCTTCTTCCCCTGGTGGACCGTTCATGGG
CATGGGCATGGGCATGGGCATGGGGATGGGAATGGGGTTGGGGATGGGGA
TGCCACCGTCGCAGGTGAAGTGTCTGCTCCGCTGCTTTTGAGATGTTGAG
ACCCCCCCCTCCTCCCCTTGTGCCCGTGCCTAAAGTCTCCGTGGACAACG
ACAAAACGCCGTTGGTTCCTAGGTTAACCCGCAGAGGATGATGCTTTTGG
CTGTGACTCGTCGCCTCAATTCCCTTTTGACAAAGCACGTTGCCTGCGTG
ACCATGAGTGGCGACGCCCACGAGCTCTGGTTCTGGTCCATCTTGTACTT
AGCGGTCACGTCGTGGGGCACCTGCCGCAGGCCAGAGGCCGCCGAGCTTG
TTGCTGCTGGCTACGGCTAGGGCGAGCCGACACTTTAGAGGCGAGGTACC
ACGGAAGCCATGCCCAGTGCTCTTTACAGCGACGAATCAGTGGCGCCCTG
GGGCGATGAAAACCATCCACAGAGGAGAGTGTTCGGCGCTCCCTAAGCAG
TGGCGGCTCGCAACCCGATTCGCGCGCGCGCACCCGCAGCCTTTCTTTTC
GCCAACGGCGGCAGCGGCAGCACCGGTGGTAGCGATGGGGATGGGGCTAC
CGCAGCAGCAGATGCCCGGGGCCACCGGGGTTGCAACAGTCGGCGCCGCG
AGCGGCGGCGTGTTCGGGGCGGGGCCCGCCGGGCTAGTCTCCCCGGCGGG
TGCTGTGATGCCGGCAGCAGCGACAGCCGGGGCGTCGACGGGTACACCCA
CCGAGGCGGTGTTGCAACCGCTGGGCGGGTCTCTAGCAGGAGCAGGAGCA
GTGGTGATGTCGGCGAGAGGGGCGGCGAAGGCGGAGGGGGCGGTGGCGGG
GGGATTGGCGGTTGCGCCTCCATTGGCGCCGGCGGCGACGAAGGACAAGA
GGCGGCGGAGACCTGAACGGTCGACCGATGCCGACAAGAAGGCTCAGGAG
CAGATCGTGCGCCGCAGGTGCGTGTCTGCGCGGGCGGATGGGTCTCGAGT
GTAGCCAGGGAGAGGTGGGGGTGTCTTATCGAAAGGTGTGGCTTCATGTA
CCGCTGTCGCGGGCCGTGGCTCTGTTTGCCGTGGTCGTGTGTGTGCGCGC
TTTCCTGTAAGCGCCTTGTGGGAGGTCTCGCTAGAAAATCTTCTCTTGCG
CCTCGACTTGTGTTTCAGGGTGGAAGCGACACCCGCGAGCGGTCGACCCA
AAAAACTGCTGGCGCTCACGTCCTTCGGCTCGTCCCTTCCCGCTTGCTCT
TGCTCACGACGTCATTCTCGCCGTGTGCGTGTGCGCGTTTCTGTGCCGCG
ACGTTCCTTGGTATTGCGTTGCATCTCCTGGTCACGCGAACCGTGGGGAT
CTAACGATGACGGTGGCGGCGTGGTCCTGCTGCGACCTGTGCGCTCTGCA
TGCCCCGCGCACGCTGCTGGACGTCTTGCCGGACTGGTGTCTCAACTCGG
CGCAGAGAACGGAATCGCGTCCTCGCGCGGCAGACGCGGATGCGGAAGAA
GTTTTTCTACCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7488:1776..4938-

>mRNA_H-canaliculatus_M_contigs7488.1.1 ID=mRNA_H-canaliculatus_M_contigs7488.1.1|Name=mRNA_H-canaliculatus_M_contigs7488.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=927bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7488:1776..4938- (Hapterophycus canaliculatus Oshoro7m male)
GGAGCAGGAGCGGAAATCGACTTTGATTTTAAAATACTTGCCGACTATCT
TACGGAGGAGGGGCAGTACGGCGGTGGGGACGTCGCTGTGCCAACGGCCG
CCAACGCCTTCAGCGCGGCCCCCGCAGTCCAACAGGGTTTGCATGCGCTG
GGTGGCGGCGATGGCGGCGGTGGCGGAGGTTTGCTGGGGTTCAACTTCGC
CGCCCACCTCAACGCCAGGATGGGCTGGGGGGCCGGGGCTCTAGCGGGAG
GGTTGCCCATCCAAGATCAGCAGCGGCGGCAGCAGCAGTTGCAGCCGCAC
TTGTACCCTTCTTCCCCTGGTGGACCGTTCATGGGCATGGGCATGGGCAT
GGGCATGGGGATGGGAATGGGGTTGGGGATGGGGATGCCACCGTCGCAGC
AGTGGCGGCTCGCAACCCGATTCGCGCGCGCGCACCCGCAGCCTTTCTTT
TCGCCAACGGCGGCAGCGGCAGCACCGGTGGTAGCGATGGGGATGGGGCT
ACCGCAGCAGCAGATGCCCGGGGCCACCGGGGTTGCAACAGTCGGCGCCG
CGAGCGGCGGCGTGTTCGGGGCGGGGCCCGCCGGGCTAGTCTCCCCGGCG
GGTGCTGTGATGCCGGCAGCAGCGACAGCCGGGGCGTCGACGGGTACACC
CACCGAGGCGGTGTTGCAACCGCTGGGCGGGTCTCTAGCAGGAGCAGGAG
CAGTGGTGATGTCGGCGAGAGGGGCGGCGAAGGCGGAGGGGGCGGTGGCG
GGGGGATTGGCGGTTGCGCCTCCATTGGCGCCGGCGGCGACGAAGGACAA
GAGGCGGCGGAGACCTGAACGGTCGACCGATGCCGACAAGAAGGCTCAGG
AGCAGATCGTGCGCCGCAGAGAACGGAATCGCGTCCTCGCGCGGCAGACG
CGGATGCGGAAGAAGTTTTTCTACCAG
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