mRNA_H-canaliculatus_M_contigs74868.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74868.2.1
Unique NamemRNA_H-canaliculatus_M_contigs74868.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ensifer sp. MPMI2T TaxID=2490847 RepID=A0A4S5IW07_9HYPH)

HSP 1 Score: 102 bits (255), Expect = 8.570e-28
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    7 GVVGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLAV 153
            GVVGSQ+PRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLAV
Sbjct:    3 GVVGSQIPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLAV 51          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: hypothetical (protein n=1 Tax=Cutibacterium acnes TaxID=1747 RepID=UPI00093F37C8)

HSP 1 Score: 95.5 bits (236), Expect = 7.580e-25
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 VSGVVGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLAV 153
            +SGVVGSQVPRHRVAAAYSV+AGGDAG LGRAYGLTPDPWQQQ L DWLAV
Sbjct:    1 MSGVVGSQVPRHRVAAAYSVSAGGDAGGLGRAYGLTPDPWQQQGLGDWLAV 51          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: Terminase (large subunit n=136 Tax=root TaxID=1 RepID=K4HN84_9CAUD)

HSP 1 Score: 103 bits (257), Expect = 1.130e-24
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 VSGVVGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLAV 153
            +SGVVGSQVPRHRVAAAYSV+AGGDAGELGRAYGLTPDPWQQQVLDDWLAV
Sbjct:    1 MSGVVGSQVPRHRVAAAYSVSAGGDAGELGRAYGLTPDPWQQQVLDDWLAV 51          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cutibacterium avidum TaxID=33010 RepID=A0A3E2DMB1_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 2.160e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   10 VVGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLA 150
            +VG+Q+PR+R+A AY VTAG DAG LG AYGL PD WQQ VLDDWLA
Sbjct:    4 LVGNQLPRYRIAPAYRVTAGSDAGTLGEAYGLKPDLWQQYVLDDWLA 50          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: hypothetical (protein n=1 Tax=Acidipropionibacterium timonense TaxID=2161818 RepID=UPI001030D104)

HSP 1 Score: 70.1 bits (170), Expect = 9.180e-13
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   13 VGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLA 150
            VG+Q+PR RVA  Y V+AG DA +LG  YGLTPDPWQ  VLDDWLA
Sbjct:    5 VGNQLPRFRVAPPYRVSAGADAAKLGAMYGLTPDPWQAAVLDDWLA 50          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: hypothetical (protein n=1 Tax=Gordonibacter massiliensis TaxID=1841863 RepID=UPI001C8BD38E)

HSP 1 Score: 57.4 bits (137), Expect = 2.770e-8
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   16 GSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWL 147
            GSQ PR R+      T GGDA EL  AYGL+PDPWQ+ VLD WL
Sbjct:   10 GSQEPRVRLEPKRKYTDGGDAAELASAYGLSPDPWQEAVLDAWL 53          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Faecalibacterium prausnitzii TaxID=853 RepID=A0A3E2U256_9FIRM)

HSP 1 Score: 53.9 bits (128), Expect = 4.640e-7
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1
Query:   13 VGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWL 147
            +GSQ P  R+A AY  T GGDA  + RA G  PDPWQ  VL+DW+
Sbjct:   15 MGSQEPSARIAPAYRSTDGGDAVRILRAGGTIPDPWQSDVLEDWM 59          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: Uncharacterized (protein n=4 Tax=Faecalibacterium TaxID=216851 RepID=A0A844EAP7_9FIRM)

HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 1
Query:   10 VVGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLA 150
            ++GSQ P  R+A  Y  T G DA  + RA G   DPWQ  +LDDW++
Sbjct:   15 MMGSQEPSARIAPEYPATDGADAVRILRAGGTVLDPWQSDILDDWMS 61          
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Subdoligranulum sp. 60_17 TaxID=1897022 RepID=A0A1Q6T378_9FIRM)

HSP 1 Score: 48.1 bits (113), Expect = 5.110e-5
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1
Query:   13 VGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWL 147
            +GSQ P  RVA  Y+ + G DA +L R  G   DPWQ  +LDDWL
Sbjct:    1 MGSQEPSERVAPDYTASDGLDAAKLVRIGGTVLDPWQSDILDDWL 45          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74868.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized8.570e-2897.96protein (Fragment) n=1 Tax=Ensifer sp. MPMI2T TaxI... [more]
hypothetical7.580e-2590.20protein n=1 Tax=Cutibacterium acnes TaxID=1747 Rep... [more]
Terminase1.130e-2496.08large subunit n=136 Tax=root TaxID=1 RepID=K4HN84_... [more]
Uncharacterized2.160e-1472.34protein n=1 Tax=Cutibacterium avidum TaxID=33010 R... [more]
hypothetical9.180e-1369.57protein n=1 Tax=Acidipropionibacterium timonense T... [more]
hypothetical2.770e-861.36protein n=1 Tax=Gordonibacter massiliensis TaxID=1... [more]
Uncharacterized4.640e-755.56protein n=2 Tax=Faecalibacterium prausnitzii TaxID... [more]
Uncharacterized2.730e-546.81protein n=4 Tax=Faecalibacterium TaxID=216851 RepI... [more]
Uncharacterized5.110e-551.11protein n=1 Tax=Subdoligranulum sp. 60_17 TaxID=18... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74868contigH-canaliculatus_M_contigs74868:394..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog504553.F4MIJ3_9CAUD
Model size153
Max annot lvl10699|Siphoviridae
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.26e-24
EggNOG OGs4QBV3@10239|Viruses,4QW0W@35237|dsDNA viruses no RNA stage,4QPPJ@28883|Caudovirales,4QKW5@10699|Siphoviridae
DescriptionPhage Terminase
Cds size153
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.028524-CDS-H-canaliculatus_M_contigs74868:393..5461696854086.028524-CDS-H-canaliculatus_M_contigs74868:393..546Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74868 394..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74868.2.1prot_H-canaliculatus_M_contigs74868.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74868 394..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74868.2.1

>prot_H-canaliculatus_M_contigs74868.2.1 ID=prot_H-canaliculatus_M_contigs74868.2.1|Name=mRNA_H-canaliculatus_M_contigs74868.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=51bp
VSGVVGSQVPRHRVAAAYSVTAGGDAGELGRAYGLTPDPWQQQVLDDWLA
V
back to top

mRNA from alignment at H-canaliculatus_M_contigs74868:394..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74868.2.1 ID=mRNA_H-canaliculatus_M_contigs74868.2.1|Name=mRNA_H-canaliculatus_M_contigs74868.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74868:394..546+ (Hapterophycus canaliculatus Oshoro7m male)
GTGTCTGGTGTTGTTGGGTCTCAGGTTCCTCGTCACCGGGTGGCTGCGGC GTATTCGGTGACTGCTGGCGGTGATGCTGGGGAGTTGGGTCGTGCGTATG GGTTGACGCCTGATCCGTGGCAGCAGCAGGTGTTGGATGATTGGCTTGCT GTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74868:394..546+

>mRNA_H-canaliculatus_M_contigs74868.2.1 ID=mRNA_H-canaliculatus_M_contigs74868.2.1|Name=mRNA_H-canaliculatus_M_contigs74868.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74868:394..546+ (Hapterophycus canaliculatus Oshoro7m male)
GTGTCTGGTGTTGTTGGGTCTCAGGTTCCTCGTCACCGGGTGGCTGCGGC
GTATTCGGTGACTGCTGGCGGTGATGCTGGGGAGTTGGGTCGTGCGTATG
GGTTGACGCCTGATCCGTGGCAGCAGCAGGTGTTGGATGATTGGCTTGCT
GTG
back to top