mRNA_H-canaliculatus_M_contigs74862.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74862.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74862.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M6_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.760e-23
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIKVRF 171
            IIVDAVAEGS GRV RDCIGLVTSR+AV ELLKLDHLIDLVIPRGSG+LVNHIKV +
Sbjct:  382 IIVDAVAEGSKGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGSLVNHIKVNY 438
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BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.510e-22
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIK 162
            IIVDAVAEGS GRV RDCIGLVTSR+AV ELLKLDHLIDLVIPRGSG+LVNHIK
Sbjct:  561 IIVDAVAEGSKGRVPRDCIGLVTSRAAVGELLKLDHLIDLVIPRGSGSLVNHIK 614
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BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJX8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-14
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIK 162
            I+ DA+ +GS G+VS D + LVTSR+ +  LLKLDH+IDLVIPRGS ALV+HIK
Sbjct:  459 IVADAIKDGSEGKVSTDVVSLVTSRNDIDSLLKLDHVIDLVIPRGSNALVSHIK 512
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BH10_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-14
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIKVRFVRLPLV 189
            ++VDAVA  S+G+V R+ +GLVTSR+ VS+LLKLD LIDLVIPRGS ALV +IK +  R+P++
Sbjct:  476 VVVDAVAAASDGKVPREIVGLVTSRTQVSDLLKLDRLIDLVIPRGSKALVTNIK-KNTRIPVL 537
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BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.180e-14
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIK 162
            II DAV E + GRV R+ IGLV  R AV+ELLKLD LIDLVIPRGSG LVN IK
Sbjct:  497 IIADAVFESTGGRVCREVIGLVVGRQAVAELLKLDALIDLVIPRGSGELVNRIK 550
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Glutamate-5-semialdehyde (dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.780e-14
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIK 162
            +IVDAV   + G+VSR+ IGLV SRS V+ELLKLD +IDLVIPRGSGALV  IK
Sbjct:   36 VIVDAVHSATGGKVSREVIGLVQSRSEVAELLKLDDVIDLVIPRGSGALVRSIK 89
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3JB98_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 36/63 (57.14%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIKVRFVRLPLV 189
            IIV+AV E +NG+V +D IGLVTSR  +S+LL+LD +IDL IPRGSG++V++IK +  R+P++
Sbjct:  463 IIVNAVEEATNGKVKKDVIGLVTSREEISDLLRLDDVIDLCIPRGSGSMVSYIK-KNTRIPVL 524
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BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L745_PLAHL)

HSP 1 Score: 72.8 bits (177), Expect = 2.150e-13
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIKVRFVRLPLV 189
            IIV+AV E S G+V +D IGLVTSR  +S+LL +D++IDL IPRGSG++V+HIK +  R+P++
Sbjct:  459 IIVNAVEEASQGKVKKDVIGLVTSRDEISDLLCMDNVIDLCIPRGSGSMVSHIK-KNTRIPVL 520
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Delta-1-pyrroline-5-carboxylate (synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC09_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.150e-13
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIKVRFVRLPLV 189
            IIVDAVA  + GRVS+  +GLVTSR A+++LL+LD +IDL IPRGSGA+V+ IK +  R+P++
Sbjct:  475 IIVDAVAAETRGRVSKSVVGLVTSREAIADLLRLDDVIDLCIPRGSGAMVSSIK-KNTRIPVL 536
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T979_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 2.150e-13
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALVNHIKVRFVRLPLV 189
            +I DA+ +GS GR++RD I LVTSR  V+++LKLD ++DLVIPRGS ALV++IK    R+P++
Sbjct:  542 VIGDAIEKGSQGRITRDIIALVTSRGQVADMLKLDDVVDLVIPRGSNALVSYIKAN-TRIPVL 603
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74862.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Delta-1-pyrroline-5-carboxylate2.760e-2387.72synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Delta-1-pyrroline-5-carboxylate2.510e-2290.74synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
Delta-1-pyrroline-5-carboxylate1.770e-1464.81synthase n=1 Tax=Spumella elongata TaxID=89044 Rep... [more]
Delta-1-pyrroline-5-carboxylate1.770e-1461.90synthase n=2 Tax=Dictyocha speculum TaxID=35687 Re... [more]
Delta-1-pyrroline-5-carboxylate6.180e-1472.22synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Glutamate-5-semialdehyde6.780e-1470.37dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94... [more]
Delta-1-pyrroline-5-carboxylate1.150e-1357.14synthase n=24 Tax=Peronosporaceae TaxID=4777 RepID... [more]
Delta-1-pyrroline-5-carboxylate2.150e-1357.14synthase n=1 Tax=Plasmopara halstedii TaxID=4781 R... [more]
Delta-1-pyrroline-5-carboxylate2.150e-1358.73synthase n=1 Tax=Pythium brassicum TaxID=1485010 R... [more]
Uncharacterized2.150e-1355.56protein (Fragment) n=1 Tax=Thalassiosira oceanica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74862contigH-canaliculatus_M_contigs74862:284..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5M6
Preferred nameALDH18A1
PFAMsAA_kinase,Aldedh
Model size204
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043,RC00684
KEGG koko:K12657
KEGG ReactionR00239,R03313
KEGG Pathwayko00330,ko01100,ko01110,ko01230,map00330,map01100,map01110,map01230
KEGG ModuleM00015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000052,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004349,GO:0004350,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006592,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009266,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010035,GO:0010154,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016772,GO:0016774,GO:0016903,GO:0017084,GO:0018130,GO:0019202,GO:0019240,GO:0019752,GO:0019866,GO:0022414,GO:0022622,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042538,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0048229,GO:0048316,GO:0048364,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0055044,GO:0055114,GO:0061458,GO:0071704,GO:0099402,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700
Exons1
Evalue4.52e-24
EggNOG OGsCOG0014@1|root,COG0263@1|root,KOG1154@2759|Eukaryota,KOG4165@2759|Eukaryota
EC1.2.1.41,2.7.2.11
Descriptionglutamate-5-semialdehyde dehydrogenase activity
Cds size204
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.9663486-CDS-H-canaliculatus_M_contigs74862:283..4871696854085.9663486-CDS-H-canaliculatus_M_contigs74862:283..487Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74862 284..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74862.1.1prot_H-canaliculatus_M_contigs74862.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74862 284..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74862.1.1

>prot_H-canaliculatus_M_contigs74862.1.1 ID=prot_H-canaliculatus_M_contigs74862.1.1|Name=mRNA_H-canaliculatus_M_contigs74862.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp
IIVDAVAEGSNGRVSRDCIGLVTSRSAVSELLKLDHLIDLVIPRGSGALV
NHIKVRFVRLPLVVGLP*
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mRNA from alignment at H-canaliculatus_M_contigs74862:284..487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74862.1.1 ID=mRNA_H-canaliculatus_M_contigs74862.1.1|Name=mRNA_H-canaliculatus_M_contigs74862.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74862:284..487- (Hapterophycus canaliculatus Oshoro7m male)
ATCATCGTGGACGCCGTGGCTGAGGGTTCGAACGGCAGAGTGTCCAGGGA
TTGCATCGGGCTCGTCACCTCGAGGTCGGCCGTCTCGGAGCTGCTCAAGC
TGGACCACCTGATCGACCTCGTCATCCCGAGAGGCTCCGGAGCGCTGGTC
AACCACATCAAGGTGCGGTTTGTGCGGCTGCCGTTAGTGGTAGGGCTACC
GTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74862:284..487-

>mRNA_H-canaliculatus_M_contigs74862.1.1 ID=mRNA_H-canaliculatus_M_contigs74862.1.1|Name=mRNA_H-canaliculatus_M_contigs74862.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74862:284..487- (Hapterophycus canaliculatus Oshoro7m male)
ATCATCGTGGACGCCGTGGCTGAGGGTTCGAACGGCAGAGTGTCCAGGGA
TTGCATCGGGCTCGTCACCTCGAGGTCGGCCGTCTCGGAGCTGCTCAAGC
TGGACCACCTGATCGACCTCGTCATCCCGAGAGGCTCCGGAGCGCTGGTC
AACCACATCAAGGTGCGGTTTGTGCGGCTGCCGTTAGTGGTAGGGCTACC
GTAG
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