mRNA_H-canaliculatus_M_contigs74846.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74846.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74846.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74846.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A2E2EXX4_9RHOB)

HSP 1 Score: 129 bits (323), Expect = 5.440e-34
Identity = 71/182 (39.01%), Postives = 107/182 (58.79%), Query Frame = 1 
Query:    1 DDAFEQAHGVEVDTPVVVQVPRHPGLLVEQFPAPSSGATIVFQFSQDAARPQDRAYLEDLQITGFNLPMFEDSADPVQARRNYAAGYFQSELFPQWAGNFEQAELFAIEDIALGNATGALQMVAGYYDQANGDNMMVRVVILPHPDRIEGYMAIATINLDLVPVSNPETLAATLTGRVLSSW 546
            D  + +  G+EV  P  V VP    + +     P  GA + F F+ D    + R +LE++Q+   ++PM E++ DP + R   AA   Q +L+P+    FE+  + A+E I  G+ TG + ++A Y D A G  M++R+  + HPD+ E Y+ I+ INLDLVPV + ETLAATLTGR+L SW
Sbjct:   44 DARYTERFGIEVPVPFSVSVPERGDVALIADGQPDGGAFVKFTFATDT---EPRQFLENIQVVTVSIPMAEEAEDPPRTRVAIAAQVLQEQLYPRAVEGFEEPRMLAVEQIDFGDVTG-VHLIATYTDPAVGP-MLLRLTAMLHPDQPESYVTISNINLDLVPVEDGETLAATLTGRLLDSW 220
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BLAST of mRNA_H-canaliculatus_M_contigs74846.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H2A6_CALRO)

HSP 1 Score: 87.4 bits (215), Expect = 3.500e-19
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:  268 SELFPQWAGNFEQAELFAIEDIALGNATGALQMVAGYYDQANGDNMMVRVVILPHPDRIEGYMAIATINLDLVPVSNPETLAATLTGRVLSSW 546
            +E FP   G + +A + +IE I +G  T A++M+  YYD    D+M+VR V++PHPDR  G   ++ ++LD++PV++  TLAAT+  R+LSS+
Sbjct:   10 TEFFPTTFGEYPEATVQSIEVIEVGGVTNAVEMIGTYYDNQYDDHMLVRAVVIPHPDRPVGITVVSQVSLDVIPVADAATLAATMGARILSSF 102
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BLAST of mRNA_H-canaliculatus_M_contigs74846.1.1 vs.
Match: hypothetical (protein n=1 Tax=Roseibium sp. CAU 1639 TaxID=2933272 RepID=UPI00200442CB)

HSP 1 Score: 54.7 bits (130), Expect = 8.550e-6
Identity = 44/152 (28.95%), Postives = 64/152 (42.11%), Query Frame = 1 
Query:   10 FEQAHGVEVDTPVVVQVPRHPGLLVEQFPAPSSGATIVFQFSQDAARPQDRAYLEDLQITGFNLPMFEDSADPVQARRNYAAGYFQSELFPQWAGNFEQAELFAIEDIALGNATGALQMVAGYYDQANGDNMMVRVVILPHPDRIEGYMAIA 465
            F Q HGV V     +  PR     +     PS G  I   F+ D A   ++     LQI  F L     + DP   +R     YF  EL  +   N +   L     + +G+   A   + G +  A+GD ++VR+V L  PD  +G + IA
Sbjct:   56 FGQKHGVPVPAAFTLAAPRREAQQILAQARPSGGGPIKIYFTTDDA---EKRIFSSLQIVTFTLK----TDDPQ--KRLEVGDYFAVELLKKLGTNPDTTRLNVRRKVMIGDLPAA--EIVGNFVNADGDQLLVRLVALARPDTRDGIIGIA 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74846.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.440e-3439.01protein n=3 Tax=Rhodobacterales TaxID=204455 RepID... [more]
Uncharacterized3.500e-1941.94protein n=1 Tax=Caligus rogercresseyi TaxID=217165... [more]
hypothetical8.550e-628.95protein n=1 Tax=Roseibium sp. CAU 1639 TaxID=29332... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74846contigH-canaliculatus_M_contigs74846:2..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size546
Hectar predicted targeting categoryother localisation
Exons1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.8010235-CDS-H-canaliculatus_M_contigs74846:1..5471696854085.8010235-CDS-H-canaliculatus_M_contigs74846:1..547Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74846 2..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74846.1.1prot_H-canaliculatus_M_contigs74846.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74846 2..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74846.1.1

>prot_H-canaliculatus_M_contigs74846.1.1 ID=prot_H-canaliculatus_M_contigs74846.1.1|Name=mRNA_H-canaliculatus_M_contigs74846.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=182bp
DDAFEQAHGVEVDTPVVVQVPRHPGLLVEQFPAPSSGATIVFQFSQDAAR
PQDRAYLEDLQITGFNLPMFEDSADPVQARRNYAAGYFQSELFPQWAGNF
EQAELFAIEDIALGNATGALQMVAGYYDQANGDNMMVRVVILPHPDRIEG
YMAIATINLDLVPVSNPETLAATLTGRVLSSW
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mRNA from alignment at H-canaliculatus_M_contigs74846:2..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74846.1.1 ID=mRNA_H-canaliculatus_M_contigs74846.1.1|Name=mRNA_H-canaliculatus_M_contigs74846.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=546bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74846:2..547+ (Hapterophycus canaliculatus Oshoro7m male)
GATGATGCTTTCGAGCAGGCCCACGGGGTGGAGGTAGACACGCCGGTCGT
CGTGCAGGTGCCCCGCCATCCCGGGCTTTTGGTGGAACAGTTTCCCGCGC
CAAGCAGCGGTGCAACTATTGTGTTCCAGTTTTCGCAAGATGCAGCGCGT
CCTCAGGACCGAGCCTATCTGGAGGATCTGCAGATCACCGGATTCAACTT
GCCGATGTTCGAGGACAGTGCCGACCCCGTTCAGGCCCGCCGAAACTATG
CGGCAGGGTATTTCCAGTCCGAGTTGTTTCCCCAGTGGGCCGGCAACTTT
GAGCAGGCAGAGCTCTTCGCGATTGAGGATATTGCGCTCGGTAATGCCAC
GGGGGCGCTGCAGATGGTGGCCGGGTACTATGATCAGGCAAACGGCGACA
ACATGATGGTGCGCGTCGTGATCCTGCCGCACCCTGACCGGATTGAAGGG
TATATGGCGATTGCGACGATCAACCTTGATCTTGTGCCGGTTTCAAACCC
GGAAACGCTGGCCGCAACCCTGACAGGGCGTGTTCTATCCAGTTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74846:2..547+

>mRNA_H-canaliculatus_M_contigs74846.1.1 ID=mRNA_H-canaliculatus_M_contigs74846.1.1|Name=mRNA_H-canaliculatus_M_contigs74846.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74846:2..547+ (Hapterophycus canaliculatus Oshoro7m male)
GATGATGCTTTCGAGCAGGCCCACGGGGTGGAGGTAGACACGCCGGTCGT
CGTGCAGGTGCCCCGCCATCCCGGGCTTTTGGTGGAACAGTTTCCCGCGC
CAAGCAGCGGTGCAACTATTGTGTTCCAGTTTTCGCAAGATGCAGCGCGT
CCTCAGGACCGAGCCTATCTGGAGGATCTGCAGATCACCGGATTCAACTT
GCCGATGTTCGAGGACAGTGCCGACCCCGTTCAGGCCCGCCGAAACTATG
CGGCAGGGTATTTCCAGTCCGAGTTGTTTCCCCAGTGGGCCGGCAACTTT
GAGCAGGCAGAGCTCTTCGCGATTGAGGATATTGCGCTCGGTAATGCCAC
GGGGGCGCTGCAGATGGTGGCCGGGTACTATGATCAGGCAAACGGCGACA
ACATGATGGTGCGCGTCGTGATCCTGCCGCACCCTGACCGGATTGAAGGG
TATATGGCGATTGCGACGATCAACCTTGATCTTGTGCCGGTTTCAAACCC
GGAAACGCTGGCCGCAACCCTGACAGGGCGTGTTCTATCCAGTTGG
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