mRNA_H-canaliculatus_M_contigs74829.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74829.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74829.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74829.1.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-16
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 QVVACVENGELKDHQLEKKLGDHTRAVVVRRSLFERRIGRSMENLPVK 144
            +V ACV  G+LKDHQLEKKLGDH RAVVVRRSLFERRIGRSME+LPV+
Sbjct:  234 EVAACVVTGKLKDHQLEKKLGDHARAVVVRRSLFERRIGRSMESLPVE 281
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BLAST of mRNA_H-canaliculatus_M_contigs74829.1.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.840e-7
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 QVVACVENGELKDHQLEKKLGDHTRAVVVRRSLFERRIGRS--MENLPV 141
            ++V  VE G +KDH LEKKLGD  RAV VRR+L+ERR+G +   E LPV
Sbjct:   32 ELVRMVEAGAIKDHALEKKLGDFNRAVKVRRTLYERRMGNAGVFEKLPV 80
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BLAST of mRNA_H-canaliculatus_M_contigs74829.1.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.150e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 QVVACVENGELKDHQLEKKLGDHTRAVVVRRSLFERRIGR 120
            +V   V +G +KDHQLE +LGDHTRAV VRR +F  R+GR
Sbjct:  156 EVAEAVLSGAVKDHQLEPRLGDHTRAVAVRRRVFAARLGR 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74829.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Hydroxymethylglutaryl-CoA1.130e-1683.33reductase (NADPH) n=1 Tax=Ectocarpus siliculosus T... [more]
3-hydroxy-3-methylglutaryl4.840e-759.18coenzyme A reductase n=1 Tax=Phaeomonas parva TaxI... [more]
3-hydroxy-3-methylglutaryl8.150e-660.00coenzyme A reductase n=1 Tax=Tribonema minus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74829contigH-canaliculatus_M_contigs74829:68..223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FUE1
Preferred nameHMGR
PFAMsHMG-CoA_red,HPIH
Model size156
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.86e-17
EggNOG OGsCOG1257@1|root,KOG2480@2759|Eukaryota
EC1.1.1.34
Descriptionhydroxymethylglutaryl-CoA reductase (NADPH) activity
Cds size156
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.7666473-CDS-H-canaliculatus_M_contigs74829:67..2231696854085.7666473-CDS-H-canaliculatus_M_contigs74829:67..223Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74829 68..223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74829.1.1prot_H-canaliculatus_M_contigs74829.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74829 68..223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74829.1.1

>prot_H-canaliculatus_M_contigs74829.1.1 ID=prot_H-canaliculatus_M_contigs74829.1.1|Name=mRNA_H-canaliculatus_M_contigs74829.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=52bp
QVVACVENGELKDHQLEKKLGDHTRAVVVRRSLFERRIGRSMENLPVKVS
LR
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mRNA from alignment at H-canaliculatus_M_contigs74829:68..223-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74829.1.1 ID=mRNA_H-canaliculatus_M_contigs74829.1.1|Name=mRNA_H-canaliculatus_M_contigs74829.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74829:68..223- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGTGGCGTGCGTTGAAAACGGCGAGCTGAAGGACCACCAGCTGGA
GAAGAAGCTCGGCGACCACACCCGGGCGGTGGTGGTGCGGCGCAGCCTGT
TCGAGAGGCGGATCGGCCGAAGTATGGAGAACCTCCCCGTTAAGGTGAGT
CTAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74829:68..223-

>mRNA_H-canaliculatus_M_contigs74829.1.1 ID=mRNA_H-canaliculatus_M_contigs74829.1.1|Name=mRNA_H-canaliculatus_M_contigs74829.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74829:68..223- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGTGGCGTGCGTTGAAAACGGCGAGCTGAAGGACCACCAGCTGGA
GAAGAAGCTCGGCGACCACACCCGGGCGGTGGTGGTGCGGCGCAGCCTGT
TCGAGAGGCGGATCGGCCGAAGTATGGAGAACCTCCCCGTTAAGGTGAGT
CTAAGG
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