mRNA_H-canaliculatus_M_contigs74797.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74797.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74797.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH22_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.100e-39
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    4 RWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHLEDGCSLFYRVS 204
            RWK+LEEILRWDCDVLVLQEVDHHHDWLSPMLAK+GYRSLFVKKP+APG+ FNPHLEDGCSLFYR +
Sbjct:   11 RWKLLEEILRWDCDVLVLQEVDHHHDWLSPMLAKQGYRSLFVKKPLAPGMAFNPHLEDGCSLFYRAA 77
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.050e-38
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHLEDGCSLFYRVS 204
            RRW++LEEILRWDCDVLVLQEVDHHHDWLSPMLAK+GYRSLFVKKP+APG+ FNPHLEDGCSLFYR +
Sbjct:  123 RRWRLLEEILRWDCDVLVLQEVDHHHDWLSPMLAKQGYRSLFVKKPLAPGMAFNPHLEDGCSLFYRAT 190
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.230e-19
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHLEDGCSLFYR 198
            R+W+ILEEILR+D D++ L EVDH+ DW++PMLA  GYR  FVKKP +P + +   LEDGC++ YR
Sbjct:   56 RKWRILEEILRFDADIITLCEVDHYDDWVAPMLATVGYRGCFVKKPASPTLQYGD-LEDGCAILYR 120
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin (n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9Q7_THETB)

HSP 1 Score: 76.3 bits (186), Expect = 8.440e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHLEDGCSLFYRVS 204
            R+W++LEE+L  D DVL +QEVDH  DW  PMLAK GY  +F+KK  +P + F   LEDG +LF R S
Sbjct:   83 RKWRLLEEVLLADPDVLAMQEVDHFADWFEPMLAKVGYEGVFLKKANSPCLQFCD-LEDGVALFVRSS 149
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: NOCT (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A0Z7_BRALA)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITF-NPHLEDGCSLFYR 198
            R+++ILEEIL ++ D+L  QEVDH+HD+L P L   GY  LF  KP +P +   N +  DGC+LF++
Sbjct:  103 RKYRILEEILAYNSDILCFQEVDHYHDFLEPALKSLGYHGLFYPKPDSPALYCPNNNGPDGCALFFK 169
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: nocturnin-like (isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259948)

HSP 1 Score: 67.8 bits (164), Expect = 1.130e-11
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHLE--DGCSLFYR 198
            R+++ILEE+L +D DV+ LQEVDH+HD+  P+L   GY   F+ KP +P +  NP+    DGC+LF++
Sbjct:  124 RKFRILEELLIYDPDVMCLQEVDHYHDFFDPILKVLGYHGTFMAKPSSPCLD-NPYNNGPDGCALFFK 190
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BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin ((Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L1W6_ORNMO)

HSP 1 Score: 60.1 bits (144), Expect = 1.760e-9
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHL-EDGCSLFY 195
            RRW+ILE+I+ +D D+L LQEVDH++ +LS  L + GY  +F  KP +P      +   DGC+LFY
Sbjct:   77 RRWRILEDIVLYDPDILCLQEVDHYN-FLSSTLGRIGYAGVFFPKPDSPCCYVKDNNGPDGCALFY 141
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin (n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A164RGG2_9CRUS)

HSP 1 Score: 61.2 bits (147), Expect = 2.360e-9
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHL-EDGCSLFYRVS 204
            RR++ILEEI+ ++ D++ LQEVDH+  +LS  L  +GY  ++  KP +P I    +   DGC++FYRV+
Sbjct:   91 RRYRILEEIVEFNADIICLQEVDHYQ-FLSRALRTQGYEGIYFPKPDSPCIYIKGNNGPDGCAIFYRVN 158
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X0J2_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 2.430e-9
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHLEDGCSLFYRVS 204
            R  +I+++I     D++ L E+DH+ DW  P++AKEGY S+F K+P        P   DGC LF+R S
Sbjct:  238 REARIMQQIKFMSADIVSLVELDHYEDWAKPLMAKEGYDSIFHKRP-------RPTSRDGCGLFWRRS 298
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Match: Nocturnin ((Fragment) n=3 Tax=Ornithodoros TaxID=6937 RepID=A0A1Z5KY87_ORNMO)

HSP 1 Score: 60.1 bits (144), Expect = 6.180e-9
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPGITFNPHL-EDGCSLFY 195
            RRW+ILE+I+ +D D+L LQEVDH++ +LS  L + GY  +F  KP +P      +   DGC+LFY
Sbjct:  131 RRWRILEDIVLYDPDILCLQEVDHYN-FLSSTLGRIGYAGVFFPKPDSPCCYVKDNNGPDGCALFY 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74797.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Nocturnin3.100e-3989.55n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Nocturnin1.050e-3888.24n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 R... [more]
Nocturnin1.230e-1957.58n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Y... [more]
Nocturnin8.440e-1554.41n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836... [more]
NOCT1.560e-1247.76protein n=1 Tax=Branchiostoma lanceolatum TaxID=77... [more]
nocturnin-like1.130e-1147.06isoform X1 n=2 Tax=Anneissia japonica TaxID=152943... [more]
Nocturnin1.760e-946.97(Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938... [more]
Nocturnin2.360e-943.48n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A164RGG2... [more]
Hypothetical2.430e-941.18protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID... [more]
Nocturnin6.180e-946.97(Fragment) n=3 Tax=Ornithodoros TaxID=6937 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74797contigH-canaliculatus_M_contigs74797:271..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_05039T0
Preferred nameCCRN4L
PFAMsExo_endo_phos
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K18764
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000288,GO:0000289,GO:0000290,GO:0000932,GO:0000956,GO:0002237,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004535,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030014,GO:0030278,GO:0030279,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031974,GO:0031981,GO:0032496,GO:0032501,GO:0032774,GO:0032922,GO:0032991,GO:0033962,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042752,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045475,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045600,GO:0045667,GO:0045668,GO:0045934,GO:0045995,GO:0046483,GO:0046700,GO:0048255,GO:0048471,GO:0048511,GO:0048512,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0140098,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901700,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:1903506,GO:1990904,GO:2000026,GO:2000112,GO:2001141
Exons1
Evalue1.38e-15
EggNOG OGsCOG5239@1|root,KOG0620@2759|Eukaryota
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-26_003210.1
EC3.1.13.4
Descriptionpoly(A)-specific ribonuclease activity
Cds size204
COG categoryA
BRITEko00000,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.1971354-CDS-H-canaliculatus_M_contigs74797:270..4741696854085.1971354-CDS-H-canaliculatus_M_contigs74797:270..474Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74797 271..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74797.1.1prot_H-canaliculatus_M_contigs74797.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74797 271..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74797.1.1

>prot_H-canaliculatus_M_contigs74797.1.1 ID=prot_H-canaliculatus_M_contigs74797.1.1|Name=mRNA_H-canaliculatus_M_contigs74797.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp
RRWKILEEILRWDCDVLVLQEVDHHHDWLSPMLAKEGYRSLFVKKPVAPG
ITFNPHLEDGCSLFYRVS
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mRNA from alignment at H-canaliculatus_M_contigs74797:271..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74797.1.1 ID=mRNA_H-canaliculatus_M_contigs74797.1.1|Name=mRNA_H-canaliculatus_M_contigs74797.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74797:271..474+ (Hapterophycus canaliculatus Oshoro7m male)
CGCAGGTGGAAGATACTGGAGGAGATCCTCAGGTGGGACTGCGACGTGCT
GGTCCTGCAGGAGGTGGACCACCACCACGACTGGCTGTCCCCCATGCTGG
CCAAGGAAGGCTACCGGTCTCTCTTCGTCAAGAAGCCCGTCGCGCCCGGC
ATCACTTTCAACCCCCACCTCGAGGACGGCTGCTCTCTCTTCTACAGGGT
CTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74797:271..474+

>mRNA_H-canaliculatus_M_contigs74797.1.1 ID=mRNA_H-canaliculatus_M_contigs74797.1.1|Name=mRNA_H-canaliculatus_M_contigs74797.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74797:271..474+ (Hapterophycus canaliculatus Oshoro7m male)
CGCAGGTGGAAGATACTGGAGGAGATCCTCAGGTGGGACTGCGACGTGCT
GGTCCTGCAGGAGGTGGACCACCACCACGACTGGCTGTCCCCCATGCTGG
CCAAGGAAGGCTACCGGTCTCTCTTCGTCAAGAAGCCCGTCGCGCCCGGC
ATCACTTTCAACCCCCACCTCGAGGACGGCTGCTCTCTCTTCTACAGGGT
CTCT
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