mRNA_H-canaliculatus_M_contigs74787.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74787.2.1
Unique NamemRNA_H-canaliculatus_M_contigs74787.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74787.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.260e-40
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 KQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHVFVTIGLVESSAWH 252
            KQAIVVHADDMSRVIETL+++TGKES SQY G  +TL EFARVLR  GIRFVV+NFP RCSYALPA+CAH FVTIGLVESSAWH
Sbjct:  258 KQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWH 341
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BLAST of mRNA_H-canaliculatus_M_contigs74787.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.020e-27
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 KQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKC----AHVFVTIGLVESS-AW 249
            KQAIVVHADDMSRVIETLK++T KES SQY G  +TLPEFARVL+  GIRFVVMNFP+RCSYALPA+     AH     GL+ S+ AW
Sbjct:  500 KQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFMRAHELALRGLLHSNDAW 587
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BLAST of mRNA_H-canaliculatus_M_contigs74787.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.650e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 KQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHVFVTIGLVESSAWH 252
            K+AI++ A DM RV++ L +D  K S+SQY+G +  L   A  LR   IRFVV++FP  CSYA+PA+CAH+FVT+ LVES AWH
Sbjct:  530 KRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWH 613
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BLAST of mRNA_H-canaliculatus_M_contigs74787.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 9.260e-18
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 KQAIVVHADDMSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARCSYALPAKCAHVFVTIGLVESSAWH 252
            K+AIVV A DM RV+   K+D  K    QY G +  L   A  L+   I FVV++FP  CSYA+P KCAH+ VT+ LVE+ AW+
Sbjct:  304 KRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWN 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74787.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized4.260e-4082.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.020e-2769.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.650e-2154.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.260e-1848.81protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74787contigH-canaliculatus_M_contigs74787:286..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.133443-CDS-H-canaliculatus_M_contigs74787:285..5071696854085.133443-CDS-H-canaliculatus_M_contigs74787:285..507Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74787 286..507 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.1527548-UTR-H-canaliculatus_M_contigs74787:507..5371696854085.1527548-UTR-H-canaliculatus_M_contigs74787:507..537Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74787 508..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74787.2.1prot_H-canaliculatus_M_contigs74787.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74787 286..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74787.2.1

>prot_H-canaliculatus_M_contigs74787.2.1 ID=prot_H-canaliculatus_M_contigs74787.2.1|Name=mRNA_H-canaliculatus_M_contigs74787.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=74bp
MSRVIETLKMDTGKESTSQYSGKLQTLPEFARVLRGAGIRFVVMNFPARC
SYALPAKCAHVFVTIGLVESSAWH
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mRNA from alignment at H-canaliculatus_M_contigs74787:286..537-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74787.2.1 ID=mRNA_H-canaliculatus_M_contigs74787.2.1|Name=mRNA_H-canaliculatus_M_contigs74787.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=252bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74787:286..537- (Hapterophycus canaliculatus Oshoro7m male)
AAACAGGCCATCGTGGTGCATGCGGACGATATGTCTAGGGTGATCGAAAC
GCTGAAAATGGACACCGGGAAGGAATCCACCAGTCAGTACAGTGGAAAGC
TCCAGACGCTTCCGGAGTTCGCGAGAGTGCTGAGAGGTGCAGGAATTAGG
TTTGTTGTGATGAATTTTCCTGCGCGGTGCTCCTACGCCCTGCCCGCAAA
GTGTGCACACGTGTTTGTTACGATAGGGTTGGTTGAGAGCTCGGCTTGGC
AC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74787:286..537-

>mRNA_H-canaliculatus_M_contigs74787.2.1 ID=mRNA_H-canaliculatus_M_contigs74787.2.1|Name=mRNA_H-canaliculatus_M_contigs74787.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=222bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74787:286..537- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCTAGGGTGATCGAAACGCTGAAAATGGACACCGGGAAGGAATCCAC
CAGTCAGTACAGTGGAAAGCTCCAGACGCTTCCGGAGTTCGCGAGAGTGC
TGAGAGGTGCAGGAATTAGGTTTGTTGTGATGAATTTTCCTGCGCGGTGC
TCCTACGCCCTGCCCGCAAAGTGTGCACACGTGTTTGTTACGATAGGGTT
GGTTGAGAGCTCGGCTTGGCAC
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