mRNA_H-canaliculatus_M_contigs74785.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74785.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74785.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.280e-18
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1
Query:   31 QGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHV 159
            +GHR  MEDEFFLSS GSFSAVYDGHGGANVSEYLRRNLYKHV
Sbjct:   47 KGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHV 89          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.890e-18
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1
Query:   31 QGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHV 159
            +GHR  MEDEFFLSS GSFSAVYDGHGGANVSEYLRRNLYKHV
Sbjct:  241 KGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHV 283          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHF8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.180e-13
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   19 LRVFQGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHV 159
            +R  +GHR +MEDEF +S  G F+AV+DGHGGA+VS+YLR+NLY ++
Sbjct:   31 VRSIKGHRSYMEDEFVVSPGGHFAAVFDGHGGASVSKYLRQNLYANL 77          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: Phosphatase (2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.330e-13
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    4 PPPALL----RVFQGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHV 159
            P PA L    +  +GHR +MED++FLS+ G F+AVYDGHGGA+VS+YLR+NLY  V
Sbjct:   52 PAPAPLFTSVQASKGHRSYMEDDYFLSADGRFAAVYDGHGGASVSKYLRQNLYTQV 107          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDA2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.390e-11
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GPPPALLRVFQGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNL 147
            GP    +  F+G R +MED+FF+S  GSF+ VYDGHGGA VS+YLR+NL
Sbjct:  311 GPYTTSVVAFKGQRSYMEDDFFISKDGSFAGVYDGHGGAAVSKYLRQNL 359          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: Protein (phosphatase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2M5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.820e-9
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   31 QGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHVS 162
            +G R +MED  ++SSC  F+AVYDGHGGA VS+YLR  L+  VS
Sbjct:  144 RGDRAYMEDTSYVSSCKRFAAVYDGHGGAAVSQYLRNQLFSMVS 187          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: Protein (n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYI9_PLAHL)

HSP 1 Score: 58.9 bits (141), Expect = 9.830e-9
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   31 QGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHVS 162
            +G R +MED  ++SSC  F+AVYDGHGG+ VS+YLR  LY  +S
Sbjct:  151 RGDRPYMEDTSYVSSCKRFAAVYDGHGGSAVSQYLRNQLYSMIS 194          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8I9_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 1.830e-8
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   22 RVFQGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYKHV 159
            R  +G R  MEDE+F++  G F+AV+DGHGG  VS+YL+R LY+ +
Sbjct:  149 RAIKGGRITMEDEYFVADGGRFAAVFDGHGGGGVSQYLKRRLYQQL 194          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0V0_BRELC)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   31 QGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLY 150
            +G R++MED  ++SSC  F+AVYDGHGG+ VS+YLR  LY
Sbjct:  155 RGDREYMEDTSYVSSCKRFAAVYDGHGGSAVSQYLRNQLY 194          
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRX5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   19 LRVFQGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLYK 153
            +R  +G R  MEDE+F+++ G F AV+DGHGG  VS+YLR  LY+
Sbjct:  272 IRALKGGRLSMEDEYFVANGGRFVAVFDGHGGGGVSQYLREKLYE 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74785.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PPM-type3.280e-1890.70phosphatase domain-containing protein n=1 Tax=Ecto... [more]
PPM-type5.890e-1890.70phosphatase domain-containing protein n=1 Tax=Ecto... [more]
Hypothetical4.180e-1359.57protein (Fragment) n=1 Tax=Attheya septentrionalis... [more]
Phosphatase5.330e-1358.932C-like domain-containing protein n=1 Tax=Tribonem... [more]
PPM-type1.390e-1159.18phosphatase domain-containing protein n=2 Tax=Mono... [more]
Protein9.820e-959.09phosphatase n=1 Tax=Phytophthora megakarya TaxID=4... [more]
Protein9.830e-956.82n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0... [more]
PPM-type1.830e-852.17phosphatase domain-containing protein n=2 Tax=Fist... [more]
PPM-type1.840e-860.00phosphatase domain-containing protein n=1 Tax=Brem... [more]
Hypothetical1.850e-853.33protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74785contigH-canaliculatus_M_contigs74785:19..186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTV6
PFAMsMannosyl_trans3,PP2C
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.38e-19
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
Descriptionprotein serine/threonine phosphatase activity
Cds size168
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.09351-CDS-H-canaliculatus_M_contigs74785:18..1861696854085.09351-CDS-H-canaliculatus_M_contigs74785:18..186Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74785 19..186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74785.1.1prot_H-canaliculatus_M_contigs74785.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74785 19..186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74785.1.1

>prot_H-canaliculatus_M_contigs74785.1.1 ID=prot_H-canaliculatus_M_contigs74785.1.1|Name=mRNA_H-canaliculatus_M_contigs74785.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=56bp
GPPPALLRVFQGHRQHMEDEFFLSSCGSFSAVYDGHGGANVSEYLRRNLY
KHVSFF
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mRNA from alignment at H-canaliculatus_M_contigs74785:19..186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74785.1.1 ID=mRNA_H-canaliculatus_M_contigs74785.1.1|Name=mRNA_H-canaliculatus_M_contigs74785.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=168bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74785:19..186+ (Hapterophycus canaliculatus Oshoro7m male)
GGTCCCCCCCCTGCTCTCCTCCGAGTATTTCAGGGACACCGGCAGCACAT GGAGGACGAGTTTTTCTTGTCCTCTTGCGGGAGCTTCTCTGCCGTATACG ACGGACACGGAGGGGCCAACGTCTCAGAGTACTTGAGGCGGAACCTGTAC AAGCACGTGAGTTTTTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74785:19..186+

>mRNA_H-canaliculatus_M_contigs74785.1.1 ID=mRNA_H-canaliculatus_M_contigs74785.1.1|Name=mRNA_H-canaliculatus_M_contigs74785.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=168bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74785:19..186+ (Hapterophycus canaliculatus Oshoro7m male)
GGTCCCCCCCCTGCTCTCCTCCGAGTATTTCAGGGACACCGGCAGCACAT
GGAGGACGAGTTTTTCTTGTCCTCTTGCGGGAGCTTCTCTGCCGTATACG
ACGGACACGGAGGGGCCAACGTCTCAGAGTACTTGAGGCGGAACCTGTAC
AAGCACGTGAGTTTTTTT
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