mRNA_H-canaliculatus_M_contigs7477.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7477.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7477.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U464_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.690e-17
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKV 204
            RWR LEGED  ++QL + I +LEDRL++K+E LLEK+LVLEEV +LT+KLR QA AG+AEA+ L+K++
Sbjct:  713 RWRGLEGEDPDVEQLASKIKVLEDRLNEKREALLEKDLVLEEVSTLTEKLRSQANAGKAEAVALAKQI 780          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Aste57867_13890 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0Y5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.540e-14
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKVTT 210
            RWRALEG+D   DQL A +  LE+R + KKE LLEKELVLEEV +L+ KLR QA+ GR + L L+KKV T
Sbjct:  718 RWRALEGDDPDEDQLGAKLAFLEERYNMKKEQLLEKELVLEEVTNLSDKLRMQASDGRGDTLQLAKKVNT 787          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKD7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.100e-14
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKVTT 210
            RWR LEG+D   DQL A +  LE+R + KKE LLEKELVLEEV +L+ KLR QA+ GR + L L+KKV T
Sbjct:  718 RWRPLEGDDPDEDQLAAKLAFLEERYNAKKEQLLEKELVLEEVTNLSDKLRSQASEGRGDTLQLAKKVNT 787          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H390_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.910e-14
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKV 204
            RWRAL GED  +DQLEA + +LE RL +KK  ++EKELVLEE+ +LT KLR +A +GR +AL L+K++
Sbjct:  539 RWRALGGEDPELDQLEAKMSVLEARLEEKKVNIIEKELVLEEITTLTTKLRNRAHSGRDDALALTKRL 606          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: MBO2, (coiled coil flagellar protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2P3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.930e-14
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKVTT 210
            RWRALEG+D   +QL A +  LE+R + KKE LLEKELVLEEV +L+ KLR QA  GR + L L+KKV T
Sbjct:  715 RWRALEGDDPDDEQLSAKLAFLEERFNVKKEQLLEKELVLEEVTNLSDKLRAQAADGRGDTLQLAKKVNT 784          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4E7_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 5.370e-14
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKV 204
            RWRAL+G+D   +QL+A I  LE R   KKE LLEKELVLEEV SL+ KLR QAT  R E L L+KKV
Sbjct:  761 RWRALDGDDPDEEQLQAKIAFLEGRYHRKKEQLLEKELVLEEVTSLSNKLRTQATERRGETLALAKKV 828          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VXW6_9SPIT)

HSP 1 Score: 70.1 bits (170), Expect = 7.640e-14
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKV 204
            +WR L GEDL    L   I  LE+RL+DKKE+LLEKEL+LEEV +L+ KLR+QA  GR   + LS+KV
Sbjct:    9 KWRKLGGEDLDPQTLRVKIQDLEERLNDKKESLLEKELILEEVTALSDKLRQQAVDGRQGTMELSQKV 76          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFN2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-13
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLS 195
            RWR L+G DL ++QL A I +LEDRL  K+E LLEKEL+LEEV SLT KLR QA + R  A +L+
Sbjct:   35 RWRPLDGADLDLEQLVAKIKVLEDRLDQKREALLEKELILEEVTSLTDKLRTQAVSKRDAAKVLA 99          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Coiled-coil (flagellar protein, move backward only 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G001_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.090e-13
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   61 ILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKV 204
            ILEDRLS KKE LLEKELVLEEV+SLTKKLRKQA+ GRA+AL LSKKV
Sbjct:   30 ILEDRLSGKKEVLLEKELVLEEVISLTKKLRKQASDGRAQALALSKKV 77          
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RMU6_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.320e-13
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKLRKQATAGRAEALLLSKKV 204
            RWR LEG+    ++L A I  LE+RL+DKKE LLEKEL+LEEV SL+ KLRKQA  GR + L L++KV
Sbjct:  271 RWRLLEGKIPDKEELSARIQQLEERLNDKKEALLEKELILEEVTSLSDKLRKQAAEGRQDTLELAQKV 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7477.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical7.690e-1761.76protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Aste57867_138901.540e-1461.43protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized2.100e-1460.00protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Hypothetical3.910e-1457.35protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
MBO2,3.930e-1460.00coiled coil flagellar protein n=1 Tax=Thraustothec... [more]
Uncharacterized5.370e-1463.24protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical7.640e-1457.35protein (Fragment) n=1 Tax=Strombidinopsis acumina... [more]
Hypothetical1.070e-1360.00protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Coiled-coil1.090e-1385.42flagellar protein, move backward only 2 n=1 Tax=Ec... [more]
Hypothetical1.320e-1360.29protein n=1 Tax=Chlamydomonas leiostraca TaxID=103... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7477contigH-canaliculatus_M_contigs7477:3276..4276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008864392.1
Preferred nameCCDC146
Model size216
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464
Exons2
Evalue3.45e-15
EggNOG OGs28H8C@1|root,2QPM4@2759|Eukaryota
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.9865406-CDS-H-canaliculatus_M_contigs7477:3275..34311696854084.9865406-CDS-H-canaliculatus_M_contigs7477:3275..3431Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7477 3276..3431 -
1696854084.997936-CDS-H-canaliculatus_M_contigs7477:4216..42761696854084.997936-CDS-H-canaliculatus_M_contigs7477:4216..4276Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7477 4217..4276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7477.1.1prot_H-canaliculatus_M_contigs7477.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7477 3276..4276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7477.1.1

>prot_H-canaliculatus_M_contigs7477.1.1 ID=prot_H-canaliculatus_M_contigs7477.1.1|Name=mRNA_H-canaliculatus_M_contigs7477.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=72bp
RWRALEGEDLSMDQLEASIMILEDRLSDKKETLLEKELVLEEVVSLTKKL
RKQATAGRAEALLLSKKVTTT*
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mRNA from alignment at H-canaliculatus_M_contigs7477:3276..4276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7477.1.1 ID=mRNA_H-canaliculatus_M_contigs7477.1.1|Name=mRNA_H-canaliculatus_M_contigs7477.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1001bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7477:3276..4276- (Hapterophycus canaliculatus Oshoro7m male)
AGGTGGAGAGCTCTTGAAGGGGAAGATCTGTCGATGGATCAACTCGAAGC ATCTATCATGGTCAGTACATGAAGGGGACATAAGTGACTCGAACCCATTG ATTCAGGCTTCGGCTCGAACCGTCTCGTTTGGTCGAATGGAACTTTTACA GCTTGGCGAATCTTGATCACAGCCACACCGAAAAAGCAATACTGCCAGCC AGGTCGGGTTCGAGGCTCGACCTACCTAGTCGAACAAGATGGCGGTCTCG AGCCACCATGGCTGGTGTCAAGGCTGGTGTGAAGCGATTACATGTCTTCT GAGCTAAAAGTTAAGCGTTTCTCTCTCCACAAAAATTCCTTGAAGCGGAA CTCCAACTGCACCTCCCTGCAAGAGTTAGTATTTCATGGCACGAGGTTTT CTACTACCGTACCACGTGGTGGAAGTGTTACCATCGATTGGGTCATGAAG TTTGCATGAGATGCGTGCCAGGGATTGGCAGCGAAAGGGTTAAAGAGAAA CATTTTATTCATGCACGTCTGCGTATGTACGGCTGAGTTCGACGAAAGGT GTTTGGCTCGCGTTTTCGTGAGCAGGTAGTTGACTTCGAAACGCGTTCAT GGAATCTTGGGGCCATTCCACATTTTCCCTGGCAGTCAGCACCATTGGTA TGCCGCGATCCTCTTAGCTTCAAGGCTCAACGGAGCTGACCGAAATCCAG CGTTCTTTCCTAGTTCTGGGTGCCAACACCCCTTCGACCCTGACAATCGA CGCAGCAGGTGGAATTTTTCACTTGTAAAGCGTCAGTCGGGACCGATTTT GAACCACATACTCTGCGTGAATGCACTCCTGTTGTCCCCTTTCAGATTCT GGAGGATCGTTTGAGTGACAAGAAAGAGACATTGTTGGAAAAAGAGCTCG TTCTGGAAGAAGTGGTCTCGCTTACCAAGAAGCTTCGCAAACAAGCCACC GCGGGTCGGGCGGAAGCCCTTCTCCTCTCCAAGAAGGTGACGACAACGTA A
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7477:3276..4276-

>mRNA_H-canaliculatus_M_contigs7477.1.1 ID=mRNA_H-canaliculatus_M_contigs7477.1.1|Name=mRNA_H-canaliculatus_M_contigs7477.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=216bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7477:3276..4276- (Hapterophycus canaliculatus Oshoro7m male)
AGGTGGAGAGCTCTTGAAGGGGAAGATCTGTCGATGGATCAACTCGAAGC
ATCTATCATGATTCTGGAGGATCGTTTGAGTGACAAGAAAGAGACATTGT
TGGAAAAAGAGCTCGTTCTGGAAGAAGTGGTCTCGCTTACCAAGAAGCTT
CGCAAACAAGCCACCGCGGGTCGGGCGGAAGCCCTTCTCCTCTCCAAGAA
GGTGACGACAACGTAA
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