mRNA_H-canaliculatus_M_contigs74751.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs74751.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs74751.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: hypothetical (protein n=1 Tax=Brevibacterium casei TaxID=33889 RepID=UPI000C781790)

HSP 1 Score: 304 bits (778), Expect = 5.320e-100
Identity = 145/169 (85.80%), Postives = 155/169 (91.72%), Query Frame = 1

Query:   43 LKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            +KAT TTPDICPTCYQ P+IDCS+CG+QALGRRTTNHGRPRCFACQAAQQIDAALTG  GTIRPELK VRDALTEL+QPRSLL+NW  LASLRLLTDIA GR+DLSHDALDA+PQVFSV YLRAMLVAA ALPPRDENA RLHRY T+ VA ITDPELRGVL+RYARWH
Sbjct:    1 MKATDTTPDICPTCYQAPMIDCSLCGQQALGRRTTNHGRPRCFACQAAQQIDAALTGSDGTIRPELKSVRDALTELKQPRSLLNNWHSLASLRLLTDIAQGRIDLSHDALDARPQVFSVTYLRAMLVAAGALPPRDENAARLHRYATQAVADITDPELRGVLSRYARWH 169

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: hypothetical (protein n=1 Tax=Haematomicrobium sanguinis TaxID=479106 RepID=UPI000A8C98B7)

HSP 1 Score: 293 bits (751), Expect = 6.620e-96
Identity = 140/169 (82.84%), Postives = 151/169 (89.35%), Query Frame = 1

Query:   43 LKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            +KATA +PD+CPTCYQ PVIDCSICG+++LGRRTTNHGRPRCFACQA QQIDAALTGP GTIRPELK VRDALTELRQPRSLL+NW  L SL LLTDIA GRLDLSHDALDA+PQVFSV YLRAMLVA+ ALPPRDENA RLHR+  E  A ITDPELRGVL+RYARWH
Sbjct:    1 MKATAASPDVCPTCYQAPVIDCSICGQRSLGRRTTNHGRPRCFACQATQQIDAALTGPDGTIRPELKPVRDALTELRQPRSLLNNWHDLPSLHLLTDIAQGRLDLSHDALDARPQVFSVTYLRAMLVASGALPPRDENAARLHRHAAEAGADITDPELRGVLSRYARWH 169

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BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Actinomycetia TaxID=1760 RepID=A0A061M0I1_9MICO)

HSP 1 Score: 288 bits (737), Expect = 2.670e-92
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 1

Query:  121 RQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            RQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSV YLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH
Sbjct:  149 RQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVNYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 291

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: hypothetical (protein n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI001A9C4E5F)

HSP 1 Score: 282 bits (722), Expect = 3.120e-90
Identity = 142/183 (77.60%), Postives = 146/183 (79.78%), Query Frame = 1

Query:    1 KRVCGVCGRLKRIALKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            KR CG+CGRLKR+ALKAT TTPD                 +QALGRRTTNHG  RCFACQA QQIDAALTGP GTIRPELKGVRDALTELRQPRSLLSNW  L SL LLT IA GRLDLSHDALDA PQVFSV YLRAMLVA  ALPPRDENA RLHRYV E VA ITDPELRGVL+RYARWH
Sbjct:   94 KRTCGICGRLKRVALKATTTTPDXXXXXXXXXXXXXXXXXQQALGRRTTNHGHSRCFACQATQQIDAALTGPDGTIRPELKGVRDALTELRQPRSLLSNWHDLPSLHLLTAIAQGRLDLSHDALDAHPQVFSVTYLRAMLVAGGALPPRDENAARLHRYVAEAVADITDPELRGVLSRYARWH 276

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BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) TaxID=478801 RepID=C7NLR2_KYTSD)

HSP 1 Score: 281 bits (720), Expect = 9.220e-90
Identity = 140/183 (76.50%), Postives = 149/183 (81.42%), Query Frame = 1

Query:    1 KRVCGVCGRLKRIALKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            +R CG+CGRLKR+ALKATATTPD+                +QALGRRTTNHG PRCFACQ+AQQIDAALTGP GTIRPELK VRDALTE RQPRSLL+NW  L SL LLTDIA GRLDLSHDALDA+PQVFSV YLRAMLVAA ALPPRDENA RLHR+  E V  ITDPELRGVLTRYARWH
Sbjct:  109 RRPCGICGRLKRVALKATATTPDVXXXXXXXXXXXXXXXXQQALGRRTTNHGWPRCFACQSAQQIDAALTGPDGTIRPELKPVRDALTEFRQPRSLLNNWHDLPSLHLLTDIARGRLDLSHDALDARPQVFSVTYLRAMLVAAGALPPRDENAARLHRHAAEAVTDITDPELRGVLTRYARWH 291

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: hypothetical (protein n=1 Tax=Brevibacterium casei TaxID=33889 RepID=UPI0011A74BC2)

HSP 1 Score: 274 bits (700), Expect = 3.320e-88
Identity = 130/169 (76.92%), Postives = 143/169 (84.62%), Query Frame = 1

Query:   43 LKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            ++AT TTPD+CPTCYQ PVIDCSICG+QALGRR TNHG PRCFACQAA  ID ALTGP G+IRPEL  VRDALTEL +PRSLL+NW  LAS+RLLTDIA GR++L H+ALDAQPQVFSV YLRAMLVAA ALPPRDENA RL+RY       +TDPELR VLTRYARWH
Sbjct:    1 MRATDTTPDVCPTCYQAPVIDCSICGQQALGRRATNHGSPRCFACQAAGLIDTALTGPDGSIRPELIPVRDALTELERPRSLLNNWHSLASMRLLTDIAQGRIELRHEALDAQPQVFSVNYLRAMLVAAGALPPRDENAARLYRYAATAADEVTDPELRSVLTRYARWH 169

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: hypothetical (protein n=1 Tax=Brevibacterium casei TaxID=33889 RepID=UPI000E64E73B)

HSP 1 Score: 269 bits (688), Expect = 2.150e-86
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 1

Query:   43 LKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            ++AT T+ D+CPTCYQ PVI CS+CG+QALGRRTTN GRPRCFACQAAQQIDAA TGP G+IRPEL GV DALT L +PRSLL+NW  LASLRLL+DIAAGRL+LSH+ALDA PQVFSV YLRA+L+AA ALP RDEN  RLHR+  + VA + DPE+RGVLTRYARWH
Sbjct:    1 MRATETSSDVCPTCYQAPVIACSLCGQQALGRRTTNRGRPRCFACQAAQQIDAARTGPDGSIRPELAGVCDALTGLERPRSLLTNWHNLASLRLLSDIAAGRLELSHEALDALPQVFSVTYLRALLIAAGALPARDENIARLHRHAAQVVADVADPEMRGVLTRYARWH 169

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Brevibacterium casei CIP 102111 TaxID=1255625 RepID=A0A2H1K2Z9_9MICO)

HSP 1 Score: 275 bits (703), Expect = 2.650e-86
Identity = 137/180 (76.11%), Postives = 147/180 (81.67%), Query Frame = 1

Query:   10 CGVCGRLKRIALKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            CG+CGR +R+ALKAT TT                   +QALGRRTTNHGRPRCFACQAAQQIDAALTG  GTIRPELK VRDALTEL+QPRSLL+NW  LASLRLLTDIA GR+DLSHDALDA+PQVFSV YLRAMLVAA ALPPRDENA RLHRY T+ VA ITDPELRGVL+RYARWH
Sbjct:  200 CGICGRSRRVALKATDTTXXXXXXXXXXXXXXXXXXXQQALGRRTTNHGRPRCFACQAAQQIDAALTGSDGTIRPELKSVRDALTELKQPRSLLNNWHSLASLRLLTDIAQGRIDLSHDALDARPQVFSVTYLRAMLVAAGALPPRDENAARLHRYATQAVADITDPELRGVLSRYARWH 379

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Tetrasphaera sp. F2B08 TaxID=2653936 RepID=A0A6I1G7D9_9MICO)

HSP 1 Score: 272 bits (696), Expect = 3.540e-86
Identity = 133/183 (72.68%), Postives = 148/183 (80.87%), Query Frame = 1

Query:    1 KRVCGVCGRLKRIALKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            +RVCGVCGRLKR+ALKATA++PD+                + ALGRRTTNHGRPRCFACQAAQQ+DAALTGP G IRPEL+ VRDALTEL +PRSLL+NW  LASLRLLT IA   +DLSHDALDA+PQVFSV YLRA+LVAA ALPPRDENA RLHRY TE VA + DPE+RGVL RYARWH
Sbjct:  109 RRVCGVCGRLKRVALKATASSPDVXXXXXXXXXXXXXXXXQHALGRRTTNHGRPRCFACQAAQQVDAALTGPDGMIRPELQPVRDALTELERPRSLLNNWHNLASLRLLTSIAQSEVDLSHDALDARPQVFSVTYLRALLVAAGALPPRDENAARLHRYATEVVAQVIDPEMRGVLARYARWH 291

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dermacoccus sp. 147Ba TaxID=2510111 RepID=A0A4Q4BTA9_9MICO)

HSP 1 Score: 254 bits (649), Expect = 3.840e-79
Identity = 128/183 (69.95%), Postives = 141/183 (77.05%), Query Frame = 1

Query:    1 KRVCGVCGRLKRIALKATATTPDICPTCYQGPVIDCSICGRQALGRRTTNHGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNWRGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRDENATRLHRYVTETVAGITDPELRGVLTRYARWH 549
            +R CG+CGR+KRIALKATAT+PDI                +QALGRRTTNHG+PRCFACQAAQQIDAALTGP G IR EL  VR+ALTEL +PRSLL+NW GLASLRLLT+IA GR++LSH+ALDA PQVF V YLRA LV A ALP RDENA RLHRY      GIT PE R VLTRYARWH
Sbjct:  109 RRPCGICGRVKRIALKATATSPDIXXXXXXXXXXXXXXXXKQALGRRTTNHGQPRCFACQAAQQIDAALTGPDGRIRSELLPVREALTELERPRSLLNNWHGLASLRLLTEIAQGRIELSHEALDALPQVFYVNYLRATLVTAGALPHRDENAARLHRYAATAADGITGPEHRSVLTRYARWH 291

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs74751.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
hypothetical	5.320e-100	85.80	protein n=1 Tax=Brevibacterium casei TaxID=33889 R...	[more]
hypothetical	6.620e-96	82.84	protein n=1 Tax=Haematomicrobium sanguinis TaxID=4...	[more]
Uncharacterized	2.670e-92	99.30	protein n=4 Tax=Actinomycetia TaxID=1760 RepID=A0A...	[more]
hypothetical	3.120e-90	77.60	protein n=1 Tax=Phytoactinopolyspora limicola TaxI...	[more]
Uncharacterized	9.220e-90	76.50	protein n=1 Tax=Kytococcus sedentarius (strain ATC...	[more]
hypothetical	3.320e-88	76.92	protein n=1 Tax=Brevibacterium casei TaxID=33889 R...	[more]
hypothetical	2.150e-86	75.15	protein n=1 Tax=Brevibacterium casei TaxID=33889 R...	[more]
Uncharacterized	2.650e-86	76.11	protein n=1 Tax=Brevibacterium casei CIP 102111 Ta...	[more]
Uncharacterized	3.540e-86	72.68	protein n=2 Tax=Tetrasphaera sp. F2B08 TaxID=26539...	[more]
Uncharacterized	3.840e-79	69.95	protein n=1 Tax=Dermacoccus sp. 147Ba TaxID=251011...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs74751	contig	H-canaliculatus_M_contigs74751:1..549 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	1121020.JIAG01000002_gene845
Model size	549
Max annot lvl	201174\|Actinobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	5.41e-97
EggNOG OGs	COG4974@1\|root,COG4974@2\|Bacteria,2HZZ8@201174\|Actinobacteria
Description	Belongs to the 'phage' integrase family
Cds size	549
COG category	L

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854084.9499269-CDS-H-canaliculatus_M_contigs74751:0..549	1696854084.9499269-CDS-H-canaliculatus_M_contigs74751:0..549	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs74751 1..549 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs74751.1.1	prot_H-canaliculatus_M_contigs74751.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs74751 1..549 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs74751:1..549-
coding sequence from alignment at H-canaliculatus_M_contigs74751:1..549-

protein sequence of mRNA_H-canaliculatus_M_contigs74751.1.1

>prot_H-canaliculatus_M_contigs74751.1.1 ID=prot_H-canaliculatus_M_contigs74751.1.1|Name=mRNA_H-canaliculatus_M_contigs74751.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=183bp
KRVCGVCGRLKRIALKATATTPDICPTCYQGPVIDCSICGRQALGRRTTN
HGRPRCFACQAAQQIDAALTGPGGTIRPELKGVRDALTELRQPRSLLSNW
RGLASLRLLTDIAAGRLDLSHDALDAQPQVFSVKYLRAMLVAAEALPPRD
ENATRLHRYVTETVAGITDPELRGVLTRYARWH

mRNA from alignment at H-canaliculatus_M_contigs74751:1..549-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs74751.1.1 ID=mRNA_H-canaliculatus_M_contigs74751.1.1|Name=mRNA_H-canaliculatus_M_contigs74751.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74751:1..549- (Hapterophycus canaliculatus Oshoro7m male)
AAGCGGGTCTGCGGCGTCTGCGGCCGGCTCAAACGGATCGCGTTGAAAGC
CACCGCGACGACGCCGGATATCTGCCCGACCTGCTACCAGGGGCCGGTGA
TCGACTGCTCGATCTGCGGGCGGCAGGCCCTCGGCCGCCGCACCACCAAT
CATGGCCGTCCCCGCTGCTTCGCCTGCCAAGCCGCCCAGCAGATCGACGC
CGCACTCACCGGCCCAGGCGGGACGATCCGCCCCGAGCTCAAAGGCGTCC
GCGACGCGCTGACCGAGCTTCGCCAACCCCGGTCGCTGCTGAGCAACTGG
CGGGGTCTTGCAAGCCTGCGCCTGCTCACCGACATCGCCGCCGGCCGGCT
CGACCTGTCCCACGATGCTCTCGATGCCCAGCCGCAGGTCTTCTCGGTCA
AATACCTGCGCGCCATGCTCGTCGCCGCCGAGGCGCTCCCGCCACGCGAT
GAGAACGCCACCAGGCTGCACCGCTACGTCACCGAAACCGTCGCCGGCAT
CACCGATCCCGAGCTGCGCGGAGTGCTGACACGCTACGCCCGCTGGCAC

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74751:1..549-

>mRNA_H-canaliculatus_M_contigs74751.1.1 ID=mRNA_H-canaliculatus_M_contigs74751.1.1|Name=mRNA_H-canaliculatus_M_contigs74751.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74751:1..549- (Hapterophycus canaliculatus Oshoro7m male)
AAGCGGGTCTGCGGCGTCTGCGGCCGGCTCAAACGGATCGCGTTGAAAGC
CACCGCGACGACGCCGGATATCTGCCCGACCTGCTACCAGGGGCCGGTGA
TCGACTGCTCGATCTGCGGGCGGCAGGCCCTCGGCCGCCGCACCACCAAT
CATGGCCGTCCCCGCTGCTTCGCCTGCCAAGCCGCCCAGCAGATCGACGC
CGCACTCACCGGCCCAGGCGGGACGATCCGCCCCGAGCTCAAAGGCGTCC
GCGACGCGCTGACCGAGCTTCGCCAACCCCGGTCGCTGCTGAGCAACTGG
CGGGGTCTTGCAAGCCTGCGCCTGCTCACCGACATCGCCGCCGGCCGGCT
CGACCTGTCCCACGATGCTCTCGATGCCCAGCCGCAGGTCTTCTCGGTCA
AATACCTGCGCGCCATGCTCGTCGCCGCCGAGGCGCTCCCGCCACGCGAT
GAGAACGCCACCAGGCTGCACCGCTACGTCACCGAAACCGTCGCCGGCAT
CACCGATCCCGAGCTGCGCGGAGTGCTGACACGCTACGCCCGCTGGCAC