mRNA_H-canaliculatus_M_contigs7471.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7471.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7471.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Vacuolar (proton pump subunit B n=3 Tax=PX clade TaxID=569578 RepID=D8LCT6_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.160e-39
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:   13 REPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            R+ QILEVFG+RAVVQVFEGT GIDNR TRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP
Sbjct:   62 RQGQILEVFGSRAVVQVFEGTHGIDNRNTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 137
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Vacuolar (proton pump subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY44_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.950e-36
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:   10 LREPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            +R+ Q+LE+ G RAVVQVFEGT+GIDNR+TR SFTGDVLKM ISEEMLGRAFNGSGKCIDNAPPVLAE+YLDI GQP
Sbjct:   54 VRQGQVLEIAGKRAVVQVFEGTSGIDNRRTRTSFTGDVLKMPISEEMLGRAFNGSGKCIDNAPPVLAENYLDIQGQP 130
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Vacuolar (proton pump subunit B n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9UDM1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.270e-32
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:   13 REPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            R  QILEV G++AVVQVFEGT+ +DNRKT +SFTGDVL+M ISEEMLGR FNGSGKCID APPV+AEDYLDI GQP
Sbjct:   57 RSGQILEVAGDKAVVQVFEGTSDVDNRKTHISFTGDVLRMPISEEMLGRQFNGSGKCIDRAPPVVAEDYLDIQGQP 132
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Vacuolar (proton pump subunit B n=39 Tax=Oomycota TaxID=4762 RepID=K3X8G8_GLOUD)

HSP 1 Score: 125 bits (314), Expect = 3.410e-32
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   13 REPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            R+ Q+LEV G++AVVQVFEGT GIDNR T   FTGDVLKMAISEEMLGRAFNGSGK ID APPV+AEDYLDI GQP
Sbjct:   62 RQGQVLEVQGSKAVVQVFEGTDGIDNRHTHCEFTGDVLKMAISEEMLGRAFNGSGKAIDGAPPVIAEDYLDIQGQP 137
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: VatB (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TKB5_SYMMI)

HSP 1 Score: 120 bits (300), Expect = 4.330e-32
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   10 LREPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            +R  Q+LEV G +AVVQ+FEGT+GIDN  TR  F+GDVLKM ISEEMLGR+FNGSGK ID APPVLAEDYLDIMG P
Sbjct:   57 VRSGQVLEVAGKKAVVQIFEGTSGIDNTHTRCKFSGDVLKMPISEEMLGRSFNGSGKQIDGAPPVLAEDYLDIMGMP 133
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZSN4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 9.190e-32
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   16 EPQI-LEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            EP+I LEV G++AVVQVFEGT GIDNR T   FTGDVLKM ISEEMLGRAFNGSGK ID  PPV+AEDYLDI GQP
Sbjct:   31 EPRIVLEVQGSKAVVQVFEGTDGIDNRHTHCEFTGDVLKMPISEEMLGRAFNGSGKAIDGGPPVVAEDYLDIQGQP 106
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUB5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.480e-31
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   13 REPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            R  Q+LEV G+RAVVQVFEGT+ IDNRKTR  FTGDVLKM +SEEMLGR+FNGSGK IDN+P VL E YLDI GQP
Sbjct:   28 RSGQVLEVAGSRAVVQVFEGTSDIDNRKTRCEFTGDVLKMGVSEEMLGRSFNGSGKVIDNSPKVLPEAYLDINGQP 103
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Vacuolar (proton pump subunit B n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAE7_PYTIN)

HSP 1 Score: 123 bits (309), Expect = 2.040e-31
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   13 REPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            R+ Q+LEV G +AVVQVFEGT GIDNR T   FTGDVLKMAISEEMLGR FNGSGK ID APPV+AEDYLDI GQP
Sbjct:   59 RQGQVLEVQGTKAVVQVFEGTDGIDNRNTHCEFTGDVLKMAISEEMLGRTFNGSGKAIDGAPPVVAEDYLDIQGQP 134
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Vacuolar (proton pump subunit B n=6 Tax=Blastocystis TaxID=12967 RepID=D8M9C9_BLAHO)

HSP 1 Score: 122 bits (307), Expect = 3.540e-31
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:   10 LREPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            +R+ ++L++FGN+A+VQVFEGTTGIDN +T   FTGD+++MAISEEMLGR FNGSG  IDNAPPVLAE+YLDI GQP
Sbjct:   59 MRKGKVLQIFGNKAIVQVFEGTTGIDNTRTHCEFTGDIMRMAISEEMLGRTFNGSGVAIDNAPPVLAEEYLDIDGQP 135
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CLP2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.500e-31
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 RFLLREPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEMLGRAFNGSGKCIDNAPPVLAEDYLDIMGQP 240
            R ++ + Q+LEV G++AVVQVFEGT GIDNR T   FTGDVLKM ISEEMLGRAFNGSGK ID  PPV+AEDYLDI GQP
Sbjct:  195 RMIVLQGQVLEVQGSKAVVQVFEGTDGIDNRHTHCEFTGDVLKMPISEEMLGRAFNGSGKAIDGGPPVVAEDYLDIQGQP 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7471.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Vacuolar3.160e-3993.42proton pump subunit B n=3 Tax=PX clade TaxID=56957... [more]
Vacuolar8.950e-3683.12proton pump subunit B n=1 Tax=Fibrocapsa japonica ... [more]
Vacuolar1.270e-3278.95proton pump subunit B n=2 Tax=Pinguiochrysidaceae ... [more]
Vacuolar3.410e-3280.26proton pump subunit B n=39 Tax=Oomycota TaxID=4762... [more]
VatB4.330e-3275.32protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Uncharacterized9.190e-3278.95protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Hypothetical1.480e-3176.32protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Vacuolar2.040e-3178.95proton pump subunit B n=1 Tax=Pythium insidiosum T... [more]
Vacuolar3.540e-3171.43proton pump subunit B n=6 Tax=Blastocystis TaxID=1... [more]
Uncharacterized5.500e-3173.75protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7471contigH-canaliculatus_M_contigs7471:4758..5284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCT6
Preferred nameATP6V1B1
PFAMsATP-synt_ab,ATP-synt_ab_N
Model size240
Max annot lvl2759|Eukaryota
KEGG koko:K02147
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001503,GO:0001666,GO:0001678,GO:0001726,GO:0003008,GO:0003674,GO:0003779,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0005902,GO:0005903,GO:0005911,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006874,GO:0006875,GO:0006885,GO:0006914,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007035,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007423,GO:0007588,GO:0007600,GO:0007605,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008286,GO:0008324,GO:0009056,GO:0009268,GO:0009405,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009790,GO:0009887,GO:0009889,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010494,GO:0010506,GO:0010556,GO:0010639,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016241,GO:0016323,GO:0016324,GO:0016328,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019725,GO:0019829,GO:0022603,GO:0022607,GO:0022610,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030054,GO:0030139,GO:0030641,GO:0030659,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031090,GO:0031164,GO:0031224,GO:0031252,GO:0031323,GO:0031326,GO:0031329,GO:0031333,GO:0031410,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033500,GO:0033572,GO:0034220,GO:0034284,GO:0034622,GO:0035770,GO:0036176,GO:0036293,GO:0036442,GO:0036464,GO:0042221,GO:0042470,GO:0042471,GO:0042472,GO:0042592,GO:0042593,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0042995,GO:0043067,GO:0043068,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043248,GO:0043254,GO:0043434,GO:0043492,GO:0043583,GO:0043933,GO:0044085,GO:0044087,GO:0044232,GO:0044237,GO:0044248,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0044877,GO:0045177,GO:0045184,GO:0045335,GO:0045851,GO:0046686,GO:0046961,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048770,GO:0048839,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050877,GO:0050896,GO:0050954,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051452,GO:0051453,GO:0051493,GO:0051494,GO:0051693,GO:0051704,GO:0051716,GO:0055044,GO:0055065,GO:0055067,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0060255,GO:0061572,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072503,GO:0072507,GO:0072512,GO:0080090,GO:0090066,GO:0090596,GO:0090662,GO:0097435,GO:0097708,GO:0098588,GO:0098590,GO:0098609,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098858,GO:0098862,GO:0099131,GO:0099132,GO:0110053,GO:0120025,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1902600,GO:1902903,GO:1902904,GO:1902906,GO:1903506,GO:1990816,GO:1990904,GO:2000112,GO:2001141
Exons2
Evalue5.18e-40
EggNOG OGsCOG1156@1|root,KOG1351@2759|Eukaryota
DescriptionATP hydrolysis coupled proton transport
Cds size240
COG categoryC
BRITEko00000,ko00001,ko00002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.841091-CDS-H-canaliculatus_M_contigs7471:4757..49171696854084.841091-CDS-H-canaliculatus_M_contigs7471:4757..4917Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7471 4758..4917 +
1696854084.8589005-CDS-H-canaliculatus_M_contigs7471:5204..52841696854084.8589005-CDS-H-canaliculatus_M_contigs7471:5204..5284Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7471 5205..5284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7471.1.1prot_H-canaliculatus_M_contigs7471.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7471 4758..5284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7471.1.1

>prot_H-canaliculatus_M_contigs7471.1.1 ID=prot_H-canaliculatus_M_contigs7471.1.1|Name=mRNA_H-canaliculatus_M_contigs7471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp
RFLLREPQILEVFGNRAVVQVFEGTTGIDNRKTRVSFTGDVLKMAISEEM
LGRAFNGSGKCIDNAPPVLAEDYLDIMGQP
back to top

mRNA from alignment at H-canaliculatus_M_contigs7471:4758..5284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7471.1.1 ID=mRNA_H-canaliculatus_M_contigs7471.1.1|Name=mRNA_H-canaliculatus_M_contigs7471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=527bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7471:4758..5284+ (Hapterophycus canaliculatus Oshoro7m male)
CGATTTCTGCTTCGTGAACCGCAGATCTTGGAAGTCTTCGGCAACCGAGC
AGTTGTCCAGGTGTTCGAGGGGACCACGGGTATCGACAACCGGAAGACCA
GGGTTTCGTTCACCGGCGATGTGCTCAAGATGGCCATTTCGGAGGAGATG
CTCGGAAGGGGTGAGTATGTAGGCATGTGCGTGTATTTGTCGCTCTGCTT
GCCTCGTGCCTGCCTGCAGATCCCACCTGGCTTGTTCTCCTGTCTGTCTG
TGTGCCCATCTCTCCCACCTTCTCTTCTGTGCGTCGGTGCCTGCCCCATG
TGTGGTGCTGAGCTGCCGCACGCTATCTCGAGACCCCAGTCGCGCCCCTT
GTCCGACACTCCGTGGGCCACCTTCTCGTGTCCTGACACGCCGTGCTACC
CCCCACCTGCGCCAAACCCATCCGGCCGCGTTCTTGCGCGGGTGCAGCCT
TCAACGGGTCCGGAAAGTGCATCGACAACGCCCCGCCGGTGCTGGCGGAG
GACTACCTCGACATCATGGGACAGCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7471:4758..5284+

>mRNA_H-canaliculatus_M_contigs7471.1.1 ID=mRNA_H-canaliculatus_M_contigs7471.1.1|Name=mRNA_H-canaliculatus_M_contigs7471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7471:4758..5284+ (Hapterophycus canaliculatus Oshoro7m male)
CGATTTCTGCTTCGTGAACCGCAGATCTTGGAAGTCTTCGGCAACCGAGC
AGTTGTCCAGGTGTTCGAGGGGACCACGGGTATCGACAACCGGAAGACCA
GGGTTTCGTTCACCGGCGATGTGCTCAAGATGGCCATTTCGGAGGAGATG
CTCGGAAGGGCCTTCAACGGGTCCGGAAAGTGCATCGACAACGCCCCGCC
GGTGCTGGCGGAGGACTACCTCGACATCATGGGACAGCCC
back to top