mRNA_H-canaliculatus_M_contigs74708.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74708.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74708.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Phatr1_ua_kg.chr_17000030 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.960e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 QERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            QERTLV+ELVAYNCDP+TEYNEVASLFL DADTAIRQ+
Sbjct:  324 QERTLVDELVAYNCDPNTEYNEVASLFLRDADTAIRQL 361
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Chloride (channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.910e-10
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            SQER LV++LV++ CD DTEYNEVASLFL+DADTAI+Q+
Sbjct:  459 SQERELVDDLVSFGCDEDTEYNEVASLFLTDADTAIKQL 497
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WR56_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.330e-8
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            +QE+ LV ELV++ C+P TEYNEVA+L  +DADTAI+Q+
Sbjct:   45 NQEQNLVKELVSFKCNPKTEYNEVATLIFTDADTAIKQL 83
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Chloride (channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-7
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            +QE+ LV+ LVA+ CDP  EYNEVASL  +DADTAI+Q+
Sbjct:   48 NQEKNLVDALVAFRCDPKHEYNEVASLIFTDADTAIKQL 86
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Chloride (channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.880e-7
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 QERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            QE+TL+ ELV++NC P  EYN+VASLF +DADTAI+Q+
Sbjct:  238 QEKTLIGELVSFNCQP-YEYNQVASLFFTDADTAIKQL 274
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Chloride (channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.920e-7
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            +QE+ LV  LV + CDP+ EYNEVASL  ++ADTAI+Q+
Sbjct:  352 NQEKNLVESLVPFQCDPEKEYNEVASLIFAEADTAIKQL 390
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Chloride (channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.890e-6
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            +QE+ LV  LV + C+P  EYNEVASL  ++ADTAI+Q+
Sbjct:  408 NQEKNLVESLVPFQCEPGKEYNEVASLIFTEADTAIKQL 446
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Chloride (channel protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPI8_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.910e-6
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            +QER L+ +LV++ C P+ EYNEVASLF +D+DTAI+Q+
Sbjct:  123 NQERELIEQLVSFQCKPN-EYNEVASLFFTDSDTAIKQL 160
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UST4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.220e-5
Identity = 22/38 (57.89%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    4 QERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            QE+ LV++LV++NC PD +YN+VASL+ ++ADTAI+Q+
Sbjct:  107 QEKQLVDDLVSFNCPPD-QYNQVASLYFTEADTAIKQL 143
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BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UTP8_9ARCH)

HSP 1 Score: 48.5 bits (114), Expect = 2.240e-5
Identity = 20/38 (52.63%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 QERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQV 117
            +E++LV +L+   C+ +T+YNE+ASL+L+D+DTAIRQ+
Sbjct:   98 EEKSLVEDLIPLYCNAETQYNELASLYLTDSDTAIRQL 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74708.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Phatr1_ua_kg.chr_170000302.960e-1389.47n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Chloride2.910e-1074.36channel protein n=1 Tax=Pinguiococcus pyrenoidosus... [more]
Hypothetical9.330e-861.54protein (Fragment) n=1 Tax=Eucampia antarctica Tax... [more]
Chloride2.080e-764.10channel protein n=1 Tax=Cyclophora tenuis TaxID=21... [more]
Chloride3.880e-765.79channel protein n=1 Tax=Fibrocapsa japonica TaxID=... [more]
Chloride9.920e-758.97channel protein n=1 Tax=Pseudo-nitzschia delicatis... [more]
Chloride8.890e-656.41channel protein n=1 Tax=Fragilariopsis cylindrus C... [more]
Chloride8.910e-658.97channel protein n=2 Tax=Dictyocha speculum TaxID=3... [more]
Hypothetical1.220e-557.89protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Uncharacterized2.240e-552.63protein (Fragment) n=1 Tax=archaeon TaxID=1906665 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74708contigH-canaliculatus_M_contigs74708:236..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDY8
Preferred nameCLCN6
PFAMsCBS,Voltage_CLC
Model size120
Max annot lvl2759|Eukaryota
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
Exons1
Evalue4.86e-14
EggNOG OGsCOG0038@1|root,KOG0474@2759|Eukaryota
DescriptionChloride Channel
Cds size120
COG categoryP
BRITEko00000,ko01009,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.789997-CDS-H-canaliculatus_M_contigs74708:235..3551696854084.789997-CDS-H-canaliculatus_M_contigs74708:235..355Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74708 236..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74708.1.1prot_H-canaliculatus_M_contigs74708.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74708 236..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74708.1.1

>prot_H-canaliculatus_M_contigs74708.1.1 ID=prot_H-canaliculatus_M_contigs74708.1.1|Name=mRNA_H-canaliculatus_M_contigs74708.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=40bp
SQERTLVNELVAYNCDPDTEYNEVASLFLSDADTAIRQVL
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mRNA from alignment at H-canaliculatus_M_contigs74708:236..355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74708.1.1 ID=mRNA_H-canaliculatus_M_contigs74708.1.1|Name=mRNA_H-canaliculatus_M_contigs74708.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74708:236..355+ (Hapterophycus canaliculatus Oshoro7m male)
TCGCAGGAGAGGACTCTCGTGAACGAGCTGGTGGCGTACAACTGCGACCC
TGACACCGAGTACAACGAGGTGGCTAGCCTGTTCCTCAGCGACGCGGACA
CCGCCATCAGACAGGTACTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74708:236..355+

>mRNA_H-canaliculatus_M_contigs74708.1.1 ID=mRNA_H-canaliculatus_M_contigs74708.1.1|Name=mRNA_H-canaliculatus_M_contigs74708.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74708:236..355+ (Hapterophycus canaliculatus Oshoro7m male)
TCGCAGGAGAGGACTCTCGTGAACGAGCTGGTGGCGTACAACTGCGACCC
TGACACCGAGTACAACGAGGTGGCTAGCCTGTTCCTCAGCGACGCGGACA
CCGCCATCAGACAGGTACTT
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