mRNA_H-canaliculatus_M_contigs74707.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74707.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74707.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.430e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   19 LSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            +SFIMARHRAS+EHPDDDEVN+IIGNG LSEHYLALARDLDVMEAK
Sbjct:  378 MSFIMARHRASYEHPDDDEVNEIIGNGSLSEHYLALARDLDVMEAK 423
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: RPN1_RPN2_N (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN95_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 8.720e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   19 LSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            +SFIMARHRAS+EHPDDD+VN+IIGNG LSEHYLALARDLDVMEAK
Sbjct:  383 MSFIMARHRASYEHPDDDDVNEIIGNGSLSEHYLALARDLDVMEAK 428
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: 26S (proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.170e-13
Identity = 28/50 (56.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    7 VPRFLSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            V + ++ ++ RHR+S+ HP+DD +N+++GN  LS+H+LALARDLDVMEAK
Sbjct:  325 VRKQMALLLGRHRSSYTHPEDDAINELVGNAALSDHFLALARDLDVMEAK 374
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4T1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.590e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   19 LSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            +  ++ARHR +FE  +DD++N+IIGN KLSEH+L LARDLDVME K
Sbjct:  294 MGLMLARHRVNFEEEEDDDLNEIIGNNKLSEHFLHLARDLDVMEPK 339
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: 26S (proteasome regulatory subunit RPN1 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C808_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 6.820e-10
Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    7 VPRFLSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            + + L+F++AR + SFE  D++E+NDI+ N KLSEH+ ALARDLD+MEAK
Sbjct:  279 IRKQLAFLLARQQISFE-TDNEEINDIMNNTKLSEHFKALARDLDIMEAK 327
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: 26S (proteasome regulatory subunit RPN1 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DKN6_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 9.330e-10
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   19 LSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            L+F++AR + SFE  D DE+NDI+ N KLSEH+ ALARDLD+MEAK
Sbjct:  304 LAFLLARQQISFE-TDCDEINDIMNNTKLSEHFKALARDLDIMEAK 348
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9L3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.260e-9
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   19 LSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            L FI+ARHR ++E  D+D +N++IGN KL+E++L LARDLDVME K
Sbjct:  296 LCFILARHRVNYEDEDED-MNELIGNNKLTEYFLHLARDLDVMEPK 340
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZQU5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.320e-9
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 PTVPRFLSFIMARHRASFE---HPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            P + + + F++ARHR +FE     D++E+N+IIGN KLSE +L +A+DLDV EAK
Sbjct:  160 PLMKKQMCFLLARHRINFEVEGDDDEEELNEIIGNEKLSEEFLKVAQDLDVTEAK 214
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2DXF7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 PTVPRFLSFIMARHRASFEHPDDDE--VNDIIGNGKLSEHYLALARDLDVMEAK 156
            P + + +  ++ARHR ++E  DDDE  +N++IGN  LSE +L LA+DLDVM+AK
Sbjct:  328 PLMKKQMCLLLARHRVNYEVEDDDEEELNELIGNAHLSEQFLKLAQDLDVMDAK 381
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BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y092_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-8
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    7 VPRFLSFIMARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK 156
            V + L +++AR R  FE   D  VNDIIGN  LS+ +LALARDLDV+EAK
Sbjct:  260 VRQQLGYLLARQRFFFEDEHDASVNDIIGNTDLSDKFLALARDLDVLEAK 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74707.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.430e-2091.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RPN1_RPN2_N8.720e-2089.13domain-containing protein n=1 Tax=Ectocarpus silic... [more]
26S5.170e-1356.00proteasome non-ATPase regulatory subunit 2 n=1 Tax... [more]
Hypothetical8.590e-1263.04protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
26S6.820e-1058.00proteasome regulatory subunit RPN1 n=1 Tax=Synchyt... [more]
26S9.330e-1065.22proteasome regulatory subunit RPN1 n=1 Tax=Synchyt... [more]
Hypothetical3.260e-960.87protein n=2 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical8.320e-950.91protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical1.140e-850.00protein (Fragment) n=2 Tax=Lithodesmiaceae TaxID=4... [more]
Uncharacterized2.130e-858.00protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74707contigH-canaliculatus_M_contigs74707:7..162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN95
Preferred nameRPN1
PFAMsPC_rep
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
Exons1
Evalue3.43e-18
EggNOG OGsCOG5110@1|root,KOG2005@2759|Eukaryota
Descriptionregulation of protein catabolic process
Cds size126
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.734406-UTR-H-canaliculatus_M_contigs74707:6..361696854084.734406-UTR-H-canaliculatus_M_contigs74707:6..36Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74707 7..36 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.7489557-CDS-H-canaliculatus_M_contigs74707:36..1621696854084.7489557-CDS-H-canaliculatus_M_contigs74707:36..162Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74707 37..162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74707.1.1prot_H-canaliculatus_M_contigs74707.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74707 37..162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74707.1.1

>prot_H-canaliculatus_M_contigs74707.1.1 ID=prot_H-canaliculatus_M_contigs74707.1.1|Name=mRNA_H-canaliculatus_M_contigs74707.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
MARHRASFEHPDDDEVNDIIGNGKLSEHYLALARDLDVMEAK
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mRNA from alignment at H-canaliculatus_M_contigs74707:7..162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74707.1.1 ID=mRNA_H-canaliculatus_M_contigs74707.1.1|Name=mRNA_H-canaliculatus_M_contigs74707.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74707:7..162+ (Hapterophycus canaliculatus Oshoro7m male)
CCCACCGTCCCCCGTTTTCTCAGCTTCATCATGGCACGCCATCGCGCCTC
GTTCGAGCACCCGGACGACGACGAAGTGAACGACATCATCGGAAATGGAA
AGCTGTCGGAGCACTACCTCGCGCTCGCCAGGGACCTTGACGTCATGGAG
GCGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74707:7..162+

>mRNA_H-canaliculatus_M_contigs74707.1.1 ID=mRNA_H-canaliculatus_M_contigs74707.1.1|Name=mRNA_H-canaliculatus_M_contigs74707.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74707:7..162+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCACGCCATCGCGCCTCGTTCGAGCACCCGGACGACGACGAAGTGAA
CGACATCATCGGAAATGGAAAGCTGTCGGAGCACTACCTCGCGCTCGCCA
GGGACCTTGACGTCATGGAGGCGAAG
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