mRNA_H-canaliculatus_M_contigs74695.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74695.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74695.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74695.1.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XE93_GEOCN)

HSP 1 Score: 177 bits (450), Expect = 7.530e-54
Identity = 90/109 (82.57%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 MNRLNLSQESVNLAKQELQQVMSRLASTATMSDKEKLDFNGRWVTWNKKFLIRARLLGGFLVEYITGGVVHPELTIAHERIVGELLLFTVSDGLRDDIEHLGAVGLEAY 327
            MNRLNLS+ESVN+AKQEL+  MSR ASTA MSDKEKLDFNGRWVTWNKKFLIRA+LLGGFL EYITGGVVH +LTI HE+IVGELL  TVSDGLRD I +LGAVGL AY
Sbjct:    1 MNRLNLSEESVNIAKQELEHAMSRFASTAAMSDKEKLDFNGRWVTWNKKFLIRAKLLGGFLEEYITGGVVHSKLTIYHEQIVGELLSLTVSDGLRDYIGNLGAVGLRAY 109
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74695.1.1 vs.
Match: DDE-type (integrase/transposase/recombinase n=1 Tax=Corallococcus sp. AS-1-6 TaxID=2874599 RepID=UPI001CC1BEB7)

HSP 1 Score: 176 bits (446), Expect = 5.680e-49
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:   64 MSRLASTATMSDKEKLDFNGRWVTWNKKFLIRARLLGGFLVEYITGGVVHPELTIAHERIVGELLLFTVSDGLRDDIEHLGAVGLEAY 327
            MSRLASTATMSDKEKLDFNGRWVTWNKKFLIRARLLGGFLVEYITGGVVHPELTIAHERIVGELLLFTVSDGLRD IEHLGAVGLEAY
Sbjct:    1 MSRLASTATMSDKEKLDFNGRWVTWNKKFLIRARLLGGFLVEYITGGVVHPELTIAHERIVGELLLFTVSDGLRDYIEHLGAVGLEAY 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74695.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
CCHC-type7.530e-5482.57domain-containing protein n=1 Tax=Geotrichum candi... [more]
DDE-type5.680e-4998.86integrase/transposase/recombinase n=1 Tax=Coralloc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74695contigH-canaliculatus_M_contigs74695:2..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.4837973-CDS-H-canaliculatus_M_contigs74695:1..3281696854084.4837973-CDS-H-canaliculatus_M_contigs74695:1..328Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74695 2..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74695.1.1prot_H-canaliculatus_M_contigs74695.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74695 2..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74695.1.1

>prot_H-canaliculatus_M_contigs74695.1.1 ID=prot_H-canaliculatus_M_contigs74695.1.1|Name=mRNA_H-canaliculatus_M_contigs74695.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=109bp
MNRLNLSQESVNLAKQELQQVMSRLASTATMSDKEKLDFNGRWVTWNKKF
LIRARLLGGFLVEYITGGVVHPELTIAHERIVGELLLFTVSDGLRDDIEH
LGAVGLEAY
back to top

mRNA from alignment at H-canaliculatus_M_contigs74695:2..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74695.1.1 ID=mRNA_H-canaliculatus_M_contigs74695.1.1|Name=mRNA_H-canaliculatus_M_contigs74695.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74695:2..328- (Hapterophycus canaliculatus Oshoro7m male)
ATGAATCGACTTAACCTCTCTCAAGAATCAGTTAACCTTGCCAAGCAAGA
ATTACAACAGGTTATGAGCCGCCTTGCTTCCACCGCAACAATGTCCGACA
AAGAAAAACTCGACTTTAACGGTAGATGGGTTACCTGGAACAAGAAATTC
CTTATCCGTGCAAGACTTCTAGGTGGATTCCTTGTGGAATACATCACCGG
AGGTGTCGTTCATCCTGAGTTGACGATTGCTCATGAACGAATTGTCGGGG
AATTGTTGTTGTTCACTGTGTCTGATGGCCTAAGAGACGATATTGAGCAT
CTTGGGGCTGTCGGTCTTGAAGCTTAT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74695:2..328-

>mRNA_H-canaliculatus_M_contigs74695.1.1 ID=mRNA_H-canaliculatus_M_contigs74695.1.1|Name=mRNA_H-canaliculatus_M_contigs74695.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74695:2..328- (Hapterophycus canaliculatus Oshoro7m male)
ATGAATCGACTTAACCTCTCTCAAGAATCAGTTAACCTTGCCAAGCAAGA
ATTACAACAGGTTATGAGCCGCCTTGCTTCCACCGCAACAATGTCCGACA
AAGAAAAACTCGACTTTAACGGTAGATGGGTTACCTGGAACAAGAAATTC
CTTATCCGTGCAAGACTTCTAGGTGGATTCCTTGTGGAATACATCACCGG
AGGTGTCGTTCATCCTGAGTTGACGATTGCTCATGAACGAATTGTCGGGG
AATTGTTGTTGTTCACTGTGTCTGATGGCCTAAGAGACGATATTGAGCAT
CTTGGGGCTGTCGGTCTTGAAGCTTAT
back to top