mRNA_H-canaliculatus_M_contigs74692.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74692.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74692.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: GntR (family transcriptional regulator (Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F7I4_9RHOB)

HSP 1 Score: 246 bits (629), Expect = 1.130e-81
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIRDAQTSGAIRK 441
            IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDAL+RRMGTA HERRE MQ AI +N LQIAGQGAYGGSS+WMRAPENVDT +LA TLQ QGVLI+PGESFFGG+ RPKHFYRLAYSSIP+ RI+ G+ +VAQAIR A+ SG  RK
Sbjct:   14 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALVRRMGTAFHERREVMQQAIEDNGLQIAGQGAYGGSSYWMRAPENVDTSELAKTLQSQGVLIDPGESFFGGEQRPKHFYRLAYSSIPSNRIAKGIELVAQAIRAAEVSGPTRK 160          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: HTH-type (transcriptional regulator TauR n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BI55_9RHOB)

HSP 1 Score: 227 bits (579), Expect = 5.290e-70
Identity = 111/137 (81.02%), Postives = 124/137 (90.51%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIR 411
            I+EARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRE MQ AI EN LQIAGQGAYGGSS+WMRAPE+V+T  LA +LQ +GVLIEPGESFFGGD +P+HFYRLAYSSIPA RI++G+ +VA  I+
Sbjct:  348 IREARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERREIMQAAIEENGLQIAGQGAYGGSSYWMRAPEHVNTRHLAQSLQAKGVLIEPGESFFGGDGKPQHFYRLAYSSIPAGRIAEGIKLVASEIK 484          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: GntR (family transcriptional regulator n=1 Tax=Sulfitobacter guttiformis TaxID=74349 RepID=A0A420DQV7_9RHOB)

HSP 1 Score: 214 bits (546), Expect = 5.360e-65
Identity = 105/145 (72.41%), Postives = 122/145 (84.14%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIRDAQTSGAI 435
            I+EARALRASVLRHPPGHIQRTA+YFLSLGHYDAL+RRMG ALHERR  M+ AIA+N LQIAGQGA+GGSSFWMRAPE +DT  LA  L+ +GVLIEPG SFFGG+D+P++FYRL YSSIPATRI+DG+  +A  I     +G I
Sbjct:  348 IREARALRASVLRHPPGHIQRTASYFLSLGHYDALVRRMGNALHERRAKMEEAIAQNGLQIAGQGAHGGSSFWMRAPEEIDTKILARQLRARGVLIEPGHSFFGGEDQPQNFYRLGYSSIPATRIADGLQALASEISIMSKAGYI 492          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: GntR (family transcriptional regulator n=4 Tax=Roseobacter TaxID=2433 RepID=A0A640VMD1_9RHOB)

HSP 1 Score: 214 bits (545), Expect = 8.270e-65
Identity = 105/138 (76.09%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIRD 414
            I+EARALRASVLRHPPGH+QRTAAYFLSLGH+DALIRRMG ALH+RRE M  AIA NDLQIAGQGAYGGSSFWMRAP+ VDT +LA  LQ +GVLIE G +FF G  RPK +YRLAYSSIPA RI+ G+ +VA  IRD
Sbjct:  348 IREARALRASVLRHPPGHVQRTAAYFLSLGHHDALIRRMGAALHDRREVMAKAIAANDLQIAGQGAYGGSSFWMRAPDTVDTQELARRLQAKGVLIESGHAFFSGPTRPKSYYRLAYSSIPANRITKGIDVVAGEIRD 485          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: PLP-dependent (aminotransferase family protein n=1 Tax=Sulfitobacter sp. JK7-1 TaxID=2829501 RepID=UPI001BAF8EDB)

HSP 1 Score: 213 bits (542), Expect = 2.110e-64
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIRDAQTSG 429
            I+EARALRASVLRHPPGH QRTAAYFLSLGHYDAL+RRMG ALH+RR  M+  I  + LQ+AGQGA+GGSSFWMRAP+++DT  LAA L+++GVLIEPG+SFFGG +RP++FYRL YSSIPATRI+DG+A +A+ I  AQTSG
Sbjct:  348 IREARALRASVLRHPPGHTQRTAAYFLSLGHYDALVRRMGNALHDRRARMEEGIRAHGLQVAGQGAHGGSSFWMRAPDHIDTHALAARLRQRGVLIEPGQSFFGGAERPRNFYRLGYSSIPATRIADGLAELARGI--AQTSG 488          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: PLP-dependent (aminotransferase family protein n=1 Tax=Sulfitobacter sabulilitoris TaxID=2562655 RepID=A0A5S3PFJ6_9RHOB)

HSP 1 Score: 212 bits (540), Expect = 3.570e-64
Identity = 100/139 (71.94%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIRDA 417
            I+EARALRASVLRHPPGHIQRTAAYFLSLGHYDA IRRMG A H+RR  M+ AIA+  L+IAGQGAYGGSSFWMRAP++VDT +LA  L+ + VLIEPG +FF G+DRPK++YR+AYSSIP+ RI++GVA++A+A+R A
Sbjct:  348 IREARALRASVLRHPPGHIQRTAAYFLSLGHYDAQIRRMGRAFHDRRRVMEQAIADTGLRIAGQGAYGGSSFWMRAPDHVDTDRLAERLRAKSVLIEPGRAFFDGEDRPKNYYRIAYSSIPSARIAEGVALIAEAVRSA 486          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: PLP-dependent (aminotransferase family protein n=1 Tax=Sulfitobacter aestuariivivens TaxID=2766981 RepID=UPI00168A9307)

HSP 1 Score: 212 bits (539), Expect = 5.040e-64
Identity = 102/136 (75.00%), Postives = 119/136 (87.50%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAI 408
            I+EARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTA HERR  M+ A+A++DL+IAG+GAYGGSSFWMRAP+ VDT QL   L+++GVLIEPG +FF G DRP ++YRLAYSSIP+ RI DGVA +A+ I
Sbjct:  348 IREARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTAFHERRGVMEEALAKHDLEIAGRGAYGGSSFWMRAPDAVDTDQLTQRLREKGVLIEPGRAFFAGPDRPTNYYRLAYSSIPSGRIGDGVAHIAEGI 483          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: Transcriptional (regulator, GntR family n=1 Tax=Sulfitobacter delicatus TaxID=218672 RepID=A0A1G7HXE3_9RHOB)

HSP 1 Score: 211 bits (538), Expect = 7.100e-64
Identity = 98/136 (72.06%), Postives = 118/136 (86.76%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAI 408
            I+EARALRASVLRHPPGHIQRTAAYFLSLGHYDAL+RRMG ALHERR  M  A+  +DL+++G+GAYGGSSFWMRAPE VD +QLA  L+ + VLIEPG +FF G+DRP +FYRLAYSSIP+TRI++GV ++A+ I
Sbjct:  348 IREARALRASVLRHPPGHIQRTAAYFLSLGHYDALVRRMGVALHERRRVMDEALVTHDLRVSGRGAYGGSSFWMRAPEGVDAIQLAENLRARDVLIEPGHAFFAGEDRPTNFYRLAYSSIPSTRIAEGVGLIAEEI 483          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: GntR (family transcriptional regulator n=2 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A061SRU3_9RHOB)

HSP 1 Score: 209 bits (531), Expect = 7.820e-63
Identity = 97/137 (70.80%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIR 411
            I+EARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTA+HERR  M+ A+A +DLQI+G+GAYGGSSFWMRAP+ ++T +LA  L  +GVLIEPG +FF GD +P+++YRLAYSSIP  RI++GV ++AQ ++
Sbjct:  348 IREARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTAMHERRRVMEEALAAHDLQISGRGAYGGSSFWMRAPDRINTDELARRLHPKGVLIEPGRAFFAGDHQPQNYYRLAYSSIPTARITEGVNLIAQEMK 484          
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Match: Transcriptional (regulator, gntR family, putative n=2 Tax=Roseobacter TaxID=2433 RepID=Q16BJ8_ROSDO)

HSP 1 Score: 207 bits (526), Expect = 4.960e-62
Identity = 102/136 (75.00%), Postives = 117/136 (86.03%), Query Frame = 1
Query:    1 IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETMQNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGESFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAI 408
            I+EARALRASVLRHPPGHIQRTAAYFLSLGH+DALIRRMG  LHERR+ M +AIA+N LQIAGQGA+GGSSFWMRAPEN+DT  LA  L+ + VLIEPG SFF G  +P++FYRLAYSSIPA+RI  GV+ VA+ I
Sbjct:  348 IREARALRASVLRHPPGHIQRTAAYFLSLGHHDALIRRMGATLHERRQVMSDAIAQNRLQIAGQGAHGGSSFWMRAPENIDTQDLARRLRARDVLIEPGHSFFAGAAQPRNFYRLAYSSIPASRILQGVSRVAEEI 483          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74692.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GntR1.130e-8181.63family transcriptional regulator (Fragment) n=1 Ta... [more]
HTH-type5.290e-7081.02transcriptional regulator TauR n=1 Tax=Ascidiaceih... [more]
GntR5.360e-6572.41family transcriptional regulator n=1 Tax=Sulfitoba... [more]
GntR8.270e-6576.09family transcriptional regulator n=4 Tax=Roseobact... [more]
PLP-dependent2.110e-6472.73aminotransferase family protein n=1 Tax=Sulfitobac... [more]
PLP-dependent3.570e-6471.94aminotransferase family protein n=1 Tax=Sulfitobac... [more]
PLP-dependent5.040e-6475.00aminotransferase family protein n=1 Tax=Sulfitobac... [more]
Transcriptional7.100e-6472.06regulator, GntR family n=1 Tax=Sulfitobacter delic... [more]
GntR7.820e-6370.80family transcriptional regulator n=2 Tax=Sulfitoba... [more]
Transcriptional4.960e-6275.00regulator, gntR family, putative n=2 Tax=Roseobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74692contigH-canaliculatus_M_contigs74692:2..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1443111.JASG01000004_gene2938
Preferred nametauR
PFAMsAminotran_1_2,GntR
Model size444
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K00375
Hectar predicted targeting categorymitochondrion
Exons1
Evalue8.79e-66
EggNOG OGsCOG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,3ZWAA@60136|Sulfitobacter
Descriptionhelix_turn_helix gluconate operon transcriptional repressor
Cds size444
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.4501276-CDS-H-canaliculatus_M_contigs74692:1..4451696854084.4501276-CDS-H-canaliculatus_M_contigs74692:1..445Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74692 2..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74692.1.1prot_H-canaliculatus_M_contigs74692.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74692 2..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74692.1.1

>prot_H-canaliculatus_M_contigs74692.1.1 ID=prot_H-canaliculatus_M_contigs74692.1.1|Name=mRNA_H-canaliculatus_M_contigs74692.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=148bp
IKEARALRASVLRHPPGHIQRTAAYFLSLGHYDALIRRMGTALHERRETM
QNAIAENDLQIAGQGAYGGSSFWMRAPENVDTVQLAATLQKQGVLIEPGE
SFFGGDDRPKHFYRLAYSSIPATRISDGVAIVAQAIRDAQTSGAIRK*
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mRNA from alignment at H-canaliculatus_M_contigs74692:2..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74692.1.1 ID=mRNA_H-canaliculatus_M_contigs74692.1.1|Name=mRNA_H-canaliculatus_M_contigs74692.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=444bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74692:2..445+ (Hapterophycus canaliculatus Oshoro7m male)
ATCAAAGAAGCACGCGCGCTTAGGGCATCGGTTCTGCGCCACCCACCAGG GCATATCCAACGCACCGCCGCGTATTTCCTATCGCTAGGCCACTACGACG CGCTGATCCGTCGTATGGGCACCGCCCTGCACGAACGTCGCGAAACCATG CAGAACGCGATCGCGGAAAATGACCTGCAAATCGCTGGCCAAGGGGCCTA TGGTGGATCGTCATTCTGGATGCGCGCGCCCGAAAATGTGGACACTGTGC AACTGGCTGCTACCTTGCAAAAGCAAGGTGTTTTGATCGAACCGGGCGAG TCGTTTTTCGGCGGTGATGACCGTCCAAAACACTTCTACCGACTGGCCTA TTCGTCCATCCCTGCAACCCGCATTTCTGATGGCGTCGCGATTGTTGCGC AGGCCATACGCGATGCACAAACATCTGGAGCTATCCGGAAATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74692:2..445+

>mRNA_H-canaliculatus_M_contigs74692.1.1 ID=mRNA_H-canaliculatus_M_contigs74692.1.1|Name=mRNA_H-canaliculatus_M_contigs74692.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74692:2..445+ (Hapterophycus canaliculatus Oshoro7m male)
ATCAAAGAAGCACGCGCGCTTAGGGCATCGGTTCTGCGCCACCCACCAGG
GCATATCCAACGCACCGCCGCGTATTTCCTATCGCTAGGCCACTACGACG
CGCTGATCCGTCGTATGGGCACCGCCCTGCACGAACGTCGCGAAACCATG
CAGAACGCGATCGCGGAAAATGACCTGCAAATCGCTGGCCAAGGGGCCTA
TGGTGGATCGTCATTCTGGATGCGCGCGCCCGAAAATGTGGACACTGTGC
AACTGGCTGCTACCTTGCAAAAGCAAGGTGTTTTGATCGAACCGGGCGAG
TCGTTTTTCGGCGGTGATGACCGTCCAAAACACTTCTACCGACTGGCCTA
TTCGTCCATCCCTGCAACCCGCATTTCTGATGGCGTCGCGATTGTTGCGC
AGGCCATACGCGATGCACAAACATCTGGAGCTATCCGGAAATAG
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