mRNA_H-canaliculatus_M_contigs74683.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase subunit alpha (Fragment) n=1 Tax=Roseovarius sp. TaxID=1486281 RepID=A0A350LVA5_9RHOB) HSP 1 Score: 310 bits (794), Expect = 1.400e-99 Identity = 148/183 (80.87%), Postives = 164/183 (89.62%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+PGN +FFREA WDEALD AAG + RL+DT GG ++AGFGSAKC+NEEAYLFQK IR G GHNNVDHCTRLCHASSVSAL+ENVGSGAVTATFNEIENAD AIVIGANPIENHPVAAT+FKQFTKRGGKLIVMDPRG+GL R+ATH L FKPG DV+MLNA+ H IVEE L+D+QYI+
Sbjct: 298 GLNVDPGNWHQFFREADWDEALDIAAGGLKRLKDTHGGASVAGFGSAKCTNEEAYLFQKFIRQGFGHNNVDHCTRLCHASSVSALIENVGSGAVTATFNEIENADVAIVIGANPIENHPVAATYFKQFTKRGGKLIVMDPRGVGLRRFATHMLQFKPGADVSMLNAICHVIVEEGLYDQQYIE 480
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=A0A0B4EFG1_9RHOB) HSP 1 Score: 313 bits (801), Expect = 2.790e-98 Identity = 150/183 (81.97%), Postives = 163/183 (89.07%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV PGN +FFREA WDEALD AAG RL+D GGE +AGFGSAKC+NEEAYLFQKLIR G GHNNVDHCTRLCHASSV+AL+ENVGSGAVTATFNEIENAD AIVIGANPIENHPVAAT+FKQFTKRGGKLIVMDPRG+GL RYA+H L FKPG DV+MLNA+MH IVEE L+D+QYIQ
Sbjct: 298 GLNVEPGNWQQFFREAEWDEALDVAAGGWKRLKDQHGGEAVAGFGSAKCTNEEAYLFQKLIRQGFGHNNVDHCTRLCHASSVAALMENVGSGAVTATFNEIENADVAIVIGANPIENHPVAATYFKQFTKRGGKLIVMDPRGVGLRRYASHMLQFKPGADVSMLNAIMHVIVEEGLYDEQYIQ 480
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase n=1 Tax=Amylibacter sp. SFDW26 TaxID=2652722 RepID=A0A6I1EAN8_9RHOB) HSP 1 Score: 312 bits (799), Expect = 5.470e-98 Identity = 146/183 (79.78%), Postives = 168/183 (91.80%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+PGN + FREASW+EA++ AAG + +LRDT+GG+++AGFGSAKC+NEEAYLFQKLIR G GHNNVDHCTRLCHASSV+ALLENVGSGAVTATFNEIENAD AI IG NPIENHPVAAT+FKQFTKRGGKLIVMDPRG+GL ++ATH L F+PG DV+MLNA+MHTIVEEEL+DKQYI+
Sbjct: 297 GLNVDPGNPLTHFREASWEEAMEAAAGGLAKLRDTEGGKSVAGFGSAKCTNEEAYLFQKLIRQGFGHNNVDHCTRLCHASSVAALLENVGSGAVTATFNEIENADVAIAIGCNPIENHPVAATYFKQFTKRGGKLIVMDPRGVGLGKHATHRLKFRPGTDVSMLNAIMHTIVEEELYDKQYIE 479
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: formate (dehydrogenase subunit alpha n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=UPI001664CE44) HSP 1 Score: 311 bits (798), Expect = 7.790e-98 Identity = 149/182 (81.87%), Postives = 167/182 (91.76%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYI 546
GLNV+P L EFFREA+W+EA+ AAG + +LRD +GG++IAGFGSAKCSNEEAYLFQKLIR G GHNNVDHCTRLCHASSV+AL+ENVGSGAV+ATFNEIENAD AIVIGANPIENHPVAAT+FKQFTKRGGKLIVMDPRG+GL +YATH L F+PG DVAMLNA+MHTIVEEEL+DKQYI
Sbjct: 298 GLNVHPDALHEFFREATWEEAMTVAAGGLAKLRDEKGGKSIAGFGSAKCSNEEAYLFQKLIRQGFGHNNVDHCTRLCHASSVAALMENVGSGAVSATFNEIENADVAIVIGANPIENHPVAATYFKQFTKRGGKLIVMDPRGVGLGKYATHRLKFRPGTDVAMLNAIMHTIVEEELYDKQYI 479
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: formate (dehydrogenase subunit alpha n=1 Tax=Roseovarius sp. SHN287 TaxID=2824121 RepID=UPI001B364765) HSP 1 Score: 310 bits (795), Expect = 2.070e-97 Identity = 150/182 (82.42%), Postives = 164/182 (90.11%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYI 546
GLNV+PGN FFREASWDEALD AA + RL++T GG ++AGFGSAKC+NEEAYLFQKLIR G GHNNVDHCTRLCHASSV+AL+ENVGSGAVTATFNEIENAD AIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRG+GL R+ATH L FKPG DVAMLNA+MH IVEE L+D+QYI
Sbjct: 298 GLNVDPGNWRAFFREASWDEALDFAADGLKRLKETHGGPSVAGFGSAKCTNEEAYLFQKLIRQGFGHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGVGLRRFATHMLQFKPGMDVAMLNAIMHVIVEEGLYDQQYI 479
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IMI4_9HYPH) HSP 1 Score: 310 bits (794), Expect = 2.850e-97 Identity = 147/183 (80.33%), Postives = 163/183 (89.07%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+P +L FREA+W+EALD AAG + +LR QGG +AGFGSAKCSNEEAYLFQKLIR G GHNNVDHCTRLCHASSV+AL+ENVGSGAVTATFNEIENADCAIVIGANP+ENHPVAAT+FKQF KRGGKLIVMDPRG+GL RYATH L F+PG DVAMLNA+MH IVEE L+D+QYIQ
Sbjct: 296 GLNVDPADLSTHFREATWEEALDRAAGGLAQLRKDQGGPAVAGFGSAKCSNEEAYLFQKLIRQGFGHNNVDHCTRLCHASSVAALMENVGSGAVTATFNEIENADCAIVIGANPVENHPVAATYFKQFAKRGGKLIVMDPRGVGLGRYATHMLRFRPGTDVAMLNAIMHVIVEERLYDEQYIQ 478
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase n=1 Tax=Maritimibacter sp. 55A14 TaxID=2174844 RepID=A0A2U2CMF5_9RHOB) HSP 1 Score: 309 bits (792), Expect = 6.300e-97 Identity = 145/183 (79.23%), Postives = 165/183 (90.16%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+P N +FFREASWDEALD AAG RL+D GG+++AGFGSAKC+NEEAYLFQKLIR G GHNNVDHCTRLCHASSV+AL+ENVGSGAVTATFNEIENAD AI+IGANP+ENHPVAAT+FKQFTKRGGKLIVMDPRG+G+ R+ATH L FKPG DV+MLNA+MH IVEE L+D+QYI+
Sbjct: 303 GLNVDPSNWKDFFREASWDEALDFAAGGFKRLKDEHGGKSVAGFGSAKCTNEEAYLFQKLIRQGFGHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIIIGANPVENHPVAATYFKQFTKRGGKLIVMDPRGVGMRRFATHMLQFKPGADVSMLNAIMHVIVEEGLYDQQYIE 485
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2D8Y6F0_9RHOB) HSP 1 Score: 298 bits (764), Expect = 6.340e-97 Identity = 140/183 (76.50%), Postives = 160/183 (87.43%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+P N +FFREASWDEALD AA +L+D QGG ++AGFGSAKC+NEEAYLFQK IR G GHNNVDHCTRLCHASSV+AL+ENVGS AVTATFNEIEN+D AIVIGANP+ENHPVAAT+FKQFTKRGGKLIVMDPRG L R+A+H L F+PG DV+MLNA+MH IVEE L+D+QYI+
Sbjct: 298 GLNVDPSNWQKFFREASWDEALDFAADGFKKLKDNQGGASVAGFGSAKCTNEEAYLFQKFIRQGFGHNNVDHCTRLCHASSVAALMENVGSAAVTATFNEIENSDVAIVIGANPVENHPVAATYFKQFTKRGGKLIVMDPRGQALKRHASHMLQFRPGADVSMLNAIMHVIVEERLYDQQYIE 480
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: formate (dehydrogenase subunit alpha n=1 Tax=Alkalilacustris brevis TaxID=2026338 RepID=UPI000E0DB579) HSP 1 Score: 309 bits (791), Expect = 8.970e-97 Identity = 146/183 (79.78%), Postives = 165/183 (90.16%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+PGN E FREA+WDEALD AAG + RLRDT GG ++AGFGSAKC+NEEAYLFQ+LIR G GHNNVDHCTRLCHASSV+AL+ENVGSGAVTATFNEIENAD AIVIGANP+ENHPVAAT+FKQF KRGGKLI+MDPRG L+R+ATH L FKPG DVA+LNA+M TIVEEEL+D+QYI+
Sbjct: 303 GLNVDPGNWSEVFREATWDEALDAAAGGLARLRDTTGGASVAGFGSAKCTNEEAYLFQRLIREGFGHNNVDHCTRLCHASSVAALMENVGSGAVTATFNEIENADVAIVIGANPVENHPVAATYFKQFAKRGGKLIIMDPRGQALARHATHMLQFKPGADVALLNAIMATIVEEELYDRQYIE 485
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Match: Formate (dehydrogenase n=5 Tax=Roseovarius TaxID=74030 RepID=A0A0L6CRJ2_9RHOB) HSP 1 Score: 308 bits (790), Expect = 1.110e-96 Identity = 145/183 (79.23%), Postives = 163/183 (89.07%), Query Frame = 1
Query: 1 GLNVNPGNLMEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKLIRTGLGHNNVDHCTRLCHASSVSALLENVGSGAVTATFNEIENADCAIVIGANPIENHPVAATFFKQFTKRGGKLIVMDPRGMGLSRYATHNLNFKPGGDVAMLNAMMHTIVEEELFDKQYIQ 549
GLNV+PGN EFFREA WDEALD AG++ RL+D GG T+AGFGSAKC+NEEAYLFQK IR G GHNNVDHCTRLCHASSV+AL+ENVGSGAVTATFNEIENAD AI+IGANPIENHPVAAT+FKQFTKRGGKLIVMDPRG+G+ R+ATH L FKPG DV+MLNA+ H IVEE L+D+QYI+
Sbjct: 298 GLNVDPGNWHEFFREAEWDEALDLTAGELKRLKDAHGGATVAGFGSAKCTNEEAYLFQKFIRQGFGHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIIIGANPIENHPVAATYFKQFTKRGGKLIVMDPRGVGMRRFATHMLQFKPGADVSMLNAICHVIVEEGLYDQQYIE 480 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74683.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs74683.1.1 >prot_H-canaliculatus_M_contigs74683.1.1 ID=prot_H-canaliculatus_M_contigs74683.1.1|Name=mRNA_H-canaliculatus_M_contigs74683.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=174bp MEFFREASWDEALDHAAGQMVRLRDTQGGETIAGFGSAKCSNEEAYLFQKback to top mRNA from alignment at H-canaliculatus_M_contigs74683:2..550- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs74683.1.1 ID=mRNA_H-canaliculatus_M_contigs74683.1.1|Name=mRNA_H-canaliculatus_M_contigs74683.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74683:2..550- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74683:2..550- >mRNA_H-canaliculatus_M_contigs74683.1.1 ID=mRNA_H-canaliculatus_M_contigs74683.1.1|Name=mRNA_H-canaliculatus_M_contigs74683.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74683:2..550- (Hapterophycus canaliculatus Oshoro7m male)back to top |