mRNA_H-canaliculatus_M_contigs74670.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74670.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74670.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=1 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0IF30_9HYPH)

HSP 1 Score: 262 bits (670), Expect = 1.360e-82
Identity = 128/182 (70.33%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    4 LWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            +WE  G+ E +A GALP  ++I  +LW DR DYP+HI+AT+Y +GAGF+IGNAVA+ AGMLFVL P++ +L RG+NI IFALPPI IAPIL LTLSG +PRIVLAA+GCYF+TM+ATVIGLTQ D+R+ADV++AYGGGR ++++ VQ RGA+PVILSGLRVAAP+AVLGAILAEFGGGGRWG
Sbjct:   22 IWEVVGRLELIAGGALPGFTEILARLWIDRGDYPKHIAATLYGAGAGFVIGNAVAIAAGMLFVLWPLSMKLARGVNIAIFALPPIAIAPILTLTLSGMAPRIVLAALGCYFVTMTATVIGLTQHDSRTADVIRAYGGGRREILRYVQLRGAMPVILSGLRVAAPNAVLGAILAEFGGGGRWG 203
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BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=1 Tax=Mesorhizobium sp. 65-26 TaxID=1895781 RepID=A0A1Q4A7D7_9HYPH)

HSP 1 Score: 261 bits (666), Expect = 7.290e-82
Identity = 130/183 (71.04%), Postives = 157/183 (85.79%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            ++WE  G+F  VA GALPA S I  + W DR DYPEH+ AT++ + AGFLIGNA+AVLAGMLFVLSPVA+RL+RG+NI IF++P I I+PIL LTLSG +PRIVLAA+ CYF+TM+ATVIGLTQ D R+ADV++AYGGGRWKVM+LV+ R A+PVIL GL+VAAP+AVLGAILAEFGGGGRWG
Sbjct:   33 VVWEFLGRFGLVAGGALPAPSAILARFWLDRGDYPEHVVATLWGASAGFLIGNAIAVLAGMLFVLSPVASRLSRGINIAIFSVPSIAISPILVLTLSGMAPRIVLAAISCYFVTMTATVIGLTQIDQRTADVIRAYGGGRWKVMRLVRLRSAMPVILGGLQVAAPNAVLGAILAEFGGGGRWG 215
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=1 Tax=Rhodobacterales bacterium 32-67-9 TaxID=1970560 RepID=A0A258GLS1_9RHOB)

HSP 1 Score: 260 bits (664), Expect = 1.070e-81
Identity = 130/183 (71.04%), Postives = 155/183 (84.70%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            ++WE  G+ +W+A GALP +S+I I+LW DR DYP HI ATV++S  GFLIGNAVAV AG+LFVL P   RLTRG NI +FALPPI IAPIL LTLSG +PRI LAA+G YF+TMSATV+GL+QFD+R+ADVV+AYGG  W+VM+LV+ RGAVP ILSGLR+AAP+AVLGAILAEFGGGGRWG
Sbjct:   21 LVWELVGRMDWIAGGALPGLSEILIRLWVDRGDYPSHIWATVHASILGFLIGNAVAVGAGVLFVLFPTLLRLTRGFNIAVFALPPIAIAPILVLTLSGMAPRITLAALGVYFVTMSATVVGLSQFDSRAADVVRAYGGKDWQVMRLVRLRGAVPDILSGLRIAAPNAVLGAILAEFGGGGRWG 203
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BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease subunit n=1 Tax=Planktotalea arctica TaxID=1481893 RepID=UPI000A178747)

HSP 1 Score: 260 bits (664), Expect = 1.070e-81
Identity = 126/183 (68.85%), Postives = 153/183 (83.61%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            I+WE  G+ +W+A GALP +S+I  +LW DR DYP HI ATVY+SG GFLIGN +A+ AG+ FVLSP   RL RG+NI IFALPPI IAPIL LTLSG +PR+ LAA+G YF+TMSATVIGL+Q+D RSAD+V+AYGGG W +++LV+ RGA+P ILSGLR+AAP+AVLGAILAEFGGGGRWG
Sbjct:   21 IVWEIVGRMDWIAGGALPGLSEILTRLWIDRGDYPGHIWATVYASGLGFLIGNVLAIAAGIAFVLSPTLLRLMRGVNIAIFALPPIAIAPILVLTLSGMAPRVTLAALGVYFVTMSATVIGLSQYDTRSADLVRAYGGGNWLILKLVRIRGAIPDILSGLRIAAPNAVLGAILAEFGGGGRWG 203
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BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=2 Tax=Thalassospira TaxID=168934 RepID=A0A1Q4UNG6_9PROT)

HSP 1 Score: 259 bits (661), Expect = 2.870e-81
Identity = 126/183 (68.85%), Postives = 155/183 (84.70%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            ++WE  G+F+ VA GALP  S+I I+LW DR+DYP+HI AT+Y SG GF+ GN + V AGMLFV+SPVA RL+RG+NI IFALPPI IAPIL LTLSG +PR+VLA +G YF+TM+ATVIGL+Q D+R+ DV++AYGGG+W +M+LVQ RGA+P ILSG RVAAP+AVLGAILAEFGGGGRWG
Sbjct:   20 LIWELVGRFDLVAGGALPGFSEILIRLWADRADYPQHILATLYGSGLGFVFGNILGVGAGMLFVMSPVALRLSRGVNIAIFALPPIAIAPILTLTLSGMTPRVVLATLGVYFVTMTATVIGLSQADSRAVDVIRAYGGGKWAIMRLVQLRGALPSILSGFRVAAPNAVLGAILAEFGGGGRWG 202
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BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC-type (nitrate/sulfonate/bicarbonate transport system permease component n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840SRM6_9RHOB)

HSP 1 Score: 257 bits (656), Expect = 1.530e-80
Identity = 130/182 (71.43%), Postives = 150/182 (82.42%), Query Frame = 1 
Query:    4 LWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            LWE  G+   VA GALPA S I +QLW DR+DYP+H+ ATV  SG GFLIGN VAVLAG++FVL P   RL RG+NI IFALPPI IAPIL LTLSG +PR+ LAA+G YF+TMSATVIGL+Q+D RS DVV+AYGGG W VM+LV+ RGAVP +LSGLR+AAP+AVLGAILAEFGGGGRWG
Sbjct:   20 LWEIIGRLGLVAGGALPAPSGILLQLWADRADYPQHVLATVSGSGLGFLIGNVVAVLAGLIFVLMPATLRLLRGVNIAIFALPPIAIAPILNLTLSGMAPRVTLAALGVYFVTMSATVIGLSQYDTRSGDVVRAYGGGNWMVMRLVRLRGAVPDVLSGLRIAAPNAVLGAILAEFGGGGRWG 201
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease subunit n=1 Tax=Gemmobacter aestuarii TaxID=1445661 RepID=A0A4S3MQP1_9RHOB)

HSP 1 Score: 254 bits (650), Expect = 1.070e-79
Identity = 128/183 (69.95%), Postives = 156/183 (85.25%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            + WE AG+ + VA+GALPA+S+I  +LW DR+DYP H+SAT+ +SG GF+IGNA+AVLAG++FVLSPV  RL RG+NI IF LPPI IAPIL LTL G +PRIVLAA+G YF+TM ATV GLTQ+D+R+ADVV+AYGGGR  V++LV+ RGAVP ILSG RVAAP+AVLGAILAEFGGGGR+G
Sbjct:   16 LAWEVAGRLDLVASGALPALSEILSRLWQDRADYPAHVSATLAASGLGFVIGNALAVLAGLIFVLSPVTERLARGVNIAIFTLPPIAIAPILTLTLDGMTPRIVLAALGVYFVTMQATVTGLTQYDSRAADVVRAYGGGRGAVLRLVRVRGAVPAILSGFRVAAPNAVLGAILAEFGGGGRFG 198
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=1 Tax=Mesorhizobium soli TaxID=1295366 RepID=A0A2P7S3Y4_9HYPH)

HSP 1 Score: 254 bits (650), Expect = 1.630e-79
Identity = 125/183 (68.31%), Postives = 155/183 (84.70%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            +LWE AG+F  VA+GALP+++ I  + W DR+DYP H+ +T+ SS  GF IGN VAV AG+LFVLSP+AARL RG N+TIFA+P I IAPILALT++G SPR+ LAAMGCYF+TM+ATV+GLTQ D RSAD+V+AYGGG+W VM+ VQ R A+P+IL+GL+VAAP+AVLGAILAEFGGGGRWG
Sbjct:   30 VLWEVAGRFHLVADGALPSLTAIVERFWADRADYPAHVWSTLVSSALGFAIGNIVAVAAGILFVLSPLAARLFRGFNVTIFAVPTIAIAPILALTMTGISPRVTLAAMGCYFVTMTATVVGLTQIDLRSADLVRAYGGGKWDVMRFVQLRSALPIILAGLQVAAPNAVLGAILAEFGGGGRWG 212
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=2 Tax=Marinibacterium profundimaris TaxID=1679460 RepID=A0A225NHG3_9RHOB)

HSP 1 Score: 254 bits (648), Expect = 2.530e-79
Identity = 129/182 (70.88%), Postives = 149/182 (81.87%), Query Frame = 1 
Query:    4 LWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            LWE  GQ   VA GALP  SDI I+LW DR DYP HI AT+Y+S  GFLIGNAVA+ AG+ F LSP   RL RG+NI  FALPPI IAPILALT+SG +PRI LAA+G YF+TM+ATVIGL+Q D+R+ DVV+AYGG RW V++LVQFRGAVP IL+GLR+AAP+AVLGAILAEFGGGGRWG
Sbjct:   21 LWEIIGQLGLVAGGALPPPSDILIRLWQDRGDYPNHIGATLYASVMGFLIGNAVAIAAGVAFALSPALLRLFRGINIAAFALPPIAIAPILALTMSGMAPRITLAALGVYFVTMTATVIGLSQADSRAEDVVRAYGGSRWTVLRLVQFRGAVPSILAGLRIAAPNAVLGAILAEFGGGGRWG 202
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Match: ABC (transporter permease n=2 Tax=Thalassospira marina TaxID=2048283 RepID=A0A2N3KXQ7_9PROT)

HSP 1 Score: 253 bits (645), Expect = 7.120e-79
Identity = 125/183 (68.31%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:    1 ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFLIGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNSPRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFRGAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG 549
            ++WE  G+ + VA GALP  S+I I+LW DR+DYP+HI AT+Y SG GF+ GN + V AG++F +SPVA RL RG+NI IFALPPI IAPIL LTLSG +PR+VLA +G YF+TM+ATVIGL+Q D+R+ DVV+AYGGG W VM+LVQ RGAVP ILSG RVAAP+AVLGAILAEFGGGGRWG
Sbjct:   20 VIWEIVGRLDLVAGGALPGFSEILIRLWVDRADYPQHIMATLYGSGLGFVFGNLLGVGAGIIFAMSPVALRLWRGVNIAIFALPPIAIAPILTLTLSGMTPRVVLATLGVYFVTMTATVIGLSQADSRAIDVVRAYGGGNWAVMRLVQLRGAVPSILSGFRVAAPNAVLGAILAEFGGGGRWG 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74670.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC1.360e-8270.33transporter permease n=1 Tax=Ahrensia sp. TaxID=18... [more]
ABC7.290e-8271.04transporter permease n=1 Tax=Mesorhizobium sp. 65-... [more]
ABC1.070e-8171.04transporter permease n=1 Tax=Rhodobacterales bacte... [more]
ABC1.070e-8168.85transporter permease subunit n=1 Tax=Planktotalea ... [more]
ABC2.870e-8168.85transporter permease n=2 Tax=Thalassospira TaxID=1... [more]
ABC-type1.530e-8071.43nitrate/sulfonate/bicarbonate transport system per... [more]
ABC1.070e-7969.95transporter permease subunit n=1 Tax=Gemmobacter a... [more]
ABC1.630e-7968.31transporter permease n=1 Tax=Mesorhizobium soli Ta... [more]
ABC2.530e-7970.88transporter permease n=2 Tax=Marinibacterium profu... [more]
ABC7.120e-7968.31transporter permease n=2 Tax=Thalassospira marina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74670contigH-canaliculatus_M_contigs74670:1..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog991905.SL003B_4138
PFAMsBPD_transp_1
Model size549
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.21e-79
EggNOG OGsCOG0600@1|root,COG0600@2|Bacteria,1R247@1224|Proteobacteria,2TRSM@28211|Alphaproteobacteria
DescriptionBinding-protein-dependent transport systems inner membrane component
Cds size549
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.2563896-CDS-H-canaliculatus_M_contigs74670:0..5491696854084.2563896-CDS-H-canaliculatus_M_contigs74670:0..549Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74670 1..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74670.1.1prot_H-canaliculatus_M_contigs74670.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74670 1..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74670.1.1

>prot_H-canaliculatus_M_contigs74670.1.1 ID=prot_H-canaliculatus_M_contigs74670.1.1|Name=mRNA_H-canaliculatus_M_contigs74670.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=183bp
ILWEAAGQFEWVANGALPAISDIFIQLWNDRSDYPEHISATVYSSGAGFL
IGNAVAVLAGMLFVLSPVAARLTRGLNITIFALPPIVIAPILALTLSGNS
PRIVLAAMGCYFITMSATVIGLTQFDARSADVVKAYGGGRWKVMQLVQFR
GAVPVILSGLRVAAPSAVLGAILAEFGGGGRWG
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mRNA from alignment at H-canaliculatus_M_contigs74670:1..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74670.1.1 ID=mRNA_H-canaliculatus_M_contigs74670.1.1|Name=mRNA_H-canaliculatus_M_contigs74670.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74670:1..549- (Hapterophycus canaliculatus Oshoro7m male)
ATCCTCTGGGAAGCTGCAGGGCAGTTTGAATGGGTAGCCAATGGTGCCTT
ACCCGCTATCAGCGATATATTTATCCAGCTATGGAACGATCGTTCGGATT
ACCCCGAGCATATCAGCGCAACTGTCTATTCATCCGGAGCCGGTTTTTTA
ATCGGTAATGCTGTCGCGGTATTGGCCGGCATGTTGTTTGTACTCTCGCC
GGTTGCTGCACGGCTAACCCGTGGGTTAAACATCACGATCTTTGCGCTGC
CACCGATTGTCATTGCACCGATACTGGCGCTAACCTTATCCGGTAATTCA
CCGCGTATTGTGTTGGCGGCTATGGGTTGCTATTTCATCACTATGAGCGC
AACGGTAATAGGGCTCACCCAATTCGATGCCCGTTCGGCTGATGTCGTTA
AGGCTTACGGTGGAGGTCGCTGGAAGGTCATGCAGCTGGTACAGTTTCGC
GGAGCCGTCCCGGTCATTCTCAGTGGGTTGCGAGTAGCGGCTCCAAGTGC
TGTACTTGGGGCAATACTGGCCGAGTTTGGTGGCGGAGGCCGCTGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74670:1..549-

>mRNA_H-canaliculatus_M_contigs74670.1.1 ID=mRNA_H-canaliculatus_M_contigs74670.1.1|Name=mRNA_H-canaliculatus_M_contigs74670.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74670:1..549- (Hapterophycus canaliculatus Oshoro7m male)
ATCCTCTGGGAAGCTGCAGGGCAGTTTGAATGGGTAGCCAATGGTGCCTT
ACCCGCTATCAGCGATATATTTATCCAGCTATGGAACGATCGTTCGGATT
ACCCCGAGCATATCAGCGCAACTGTCTATTCATCCGGAGCCGGTTTTTTA
ATCGGTAATGCTGTCGCGGTATTGGCCGGCATGTTGTTTGTACTCTCGCC
GGTTGCTGCACGGCTAACCCGTGGGTTAAACATCACGATCTTTGCGCTGC
CACCGATTGTCATTGCACCGATACTGGCGCTAACCTTATCCGGTAATTCA
CCGCGTATTGTGTTGGCGGCTATGGGTTGCTATTTCATCACTATGAGCGC
AACGGTAATAGGGCTCACCCAATTCGATGCCCGTTCGGCTGATGTCGTTA
AGGCTTACGGTGGAGGTCGCTGGAAGGTCATGCAGCTGGTACAGTTTCGC
GGAGCCGTCCCGGTCATTCTCAGTGGGTTGCGAGTAGCGGCTCCAAGTGC
TGTACTTGGGGCAATACTGGCCGAGTTTGGTGGCGGAGGCCGCTGGGGG
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