mRNA_H-canaliculatus_M_contigs7466.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7466.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7466.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7466.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF55_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 1.610e-152
Identity = 282/435 (64.83%), Postives = 326/435 (74.94%), Query Frame = 1 
Query:    1 MSGKRTLSLSAYKKSKALAVAPAKKERRLGFGESVSTREARAQELQLETRVIKHLDELLKKCGKDPGSAKAISNWLCAEGLEGHAKKGLSRILCYAKVWSRTLRAEGVAPKEKGADKAEAQARVAFAACVCAVSAVDSLSYRFAEAR--DGESELVKMAGEVLTGMMEAMVGAGAKPRARGLHPSEHVQLSGMVESWRKRGAIPSSSLQAIEKQLSALEPGKSNSVPSDGKNASESTSRGKNGKKRAAWAQAPAXXXXXXXXXXXXXXXXXXXXASSGRLSPPPRPSSGD------HAVASPQTDVERSAGVEAALKGLL-HGVALAGGWWAQAFEGSGPFPQGPEGCWSLQYQRTNEDPGHRQKRIGGPPGFNGDFRGEATGSSGGLGNFRTEAV--DGFDSDG-APSTPSTVPSEASPSPERLSPVPSVKTEG 1269
            MSGKR +SLSAYKK+KALAV P KKERRLGFGESVSTREARA ELQLET+VI  LD LLK+CG+DPGS +AISNWLCAEGLEGHAKKGLSRILCY +VWSRTLRAEGVAPK+K  DKAE +AR AF ACVCA++AVDSLSYRFAE +  D E+ELVK AGEVL GMMEA+VGAG+KPR RGLHP+EH QLS MV++W +RG++PS SL++I KQL AL+PG  ++V S  +N + +  +GK+ KKRAAW + PA                        RLSPP  PSSG        A A+PQT+ ER A +E+ L  LL   VA+ G WWAQAF+G GPFPQGPEGCWSLQYQR NEDPGHR+ ++ G  G NGD R    GS   LG+ +TEA   DG DSDG APSTPSTVPSEASPSPER+  VP VKTEG
Sbjct:    1 MSGKR-ISLSAYKKNKALAVTPKKKERRLGFGESVSTREARAHELQLETQVIGRLDSLLKRCGRDPGSDQAISNWLCAEGLEGHAKKGLSRILCYVRVWSRTLRAEGVAPKDKDRDKAEVKARAAFGACVCAINAVDSLSYRFAEKKTPDAENELVKTAGEVLAGMMEAVVGAGSKPRRRGLHPTEHAQLSRMVDAWLRRGSVPSPSLESIGKQLLALDPG-GDAVVSPDRNGARA-GKGKSSKKRAAWVRVPAAAAIGDSSEGKQSP------GDVARLSPPRHPSSGGAGGPAASAGAAPQTEAERHASLESVLTDLLARNVAVPGAWWAQAFQGGGPFPQGPEGCWSLQYQRANEDPGHRRNQVTGLIGANGDRR-LGAGSGVDLGSVKTEAAGADGLDSDGGAPSTPSTVPSEASPSPERVXXVPEVKTEG 425
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BLAST of mRNA_H-canaliculatus_M_contigs7466.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK50_9PHAE)

HSP 1 Score: 425 bits (1093), Expect = 3.860e-134
Identity = 253/416 (60.82%), Postives = 301/416 (72.36%), Query Frame = 1 
Query:    1 MSGKRTLSLSAYKKSKALAVAPAKKERRLGFGESVSTREARAQELQLETRVIKHLDELLKKCGKDPGSAKAISNWLCAEGLEGHAKKGLSRILCYAKVWSRTLRAEGVAPKEKGADKAEAQARVAFAACVCAVSAVDSLSYRFAEAR---DGESELVKMAGEVLTGMMEAMVGAGAKPRARGLHPSEHVQLSGMVESWRKRGAIPSSSLQAIEKQLSALEPGKSNSVPSDGKNASESTSRGKNGKKRAAWAQAPAXXXXXXXXXXXXXXXXXXXXASSGRLSPPPRPSSGDHAV-------ASPQTDVERSAGVEAALKGLL-HGVALAGGWWAQAFEGSGPFPQGPEGCWSLQYQRTNEDPGHRQKRIGGPPGFNGDFRGEATGSSGGLGNFRTEAVD--GFDSDG-APSTPSTV 1206
            MSGKR +SLSAYK++KALA  P K ERRLGFGESVSTREARA ELQLET+VI  LD LLK+CG+DPGS +AISNWLCAEGLEGHAKKGLSRILCY +VWSRTLRAEGV+P++K  DKAE +AR AF ACVCA++AV+SLSYRFAE +   DGE+ELVK AGEVL GMMEA++GAG+KPR RGLHP+EH QLS MV++W +RG++P  SL++I KQL AL+PG  + V S  +N + +  +GK   KRAAW + PA                        RLSP    SSG           A+PQT+ ER A +E+ L  +L   VA+ G WWAQAF+G GPFPQGPEGCWSLQYQR NEDPGHR+ ++ G  G +GD R  A GS   LG+ +TEA D  G DSDG APSTPSTV
Sbjct:    1 MSGKR-ISLSAYKRNKALAGTPKKNERRLGFGESVSTREARAHELQLETQVIGRLDSLLKRCGRDPGSDQAISNWLCAEGLEGHAKKGLSRILCYVRVWSRTLRAEGVSPQDK--DKAEVKARAAFRACVCAINAVNSLSYRFAEKKKSPDGENELVKTAGEVLAGMMEAVLGAGSKPRRRGLHPTEHAQLSRMVDAWLQRGSVPLPSLESIGKQLLALDPG-GDPVVSPDRNGARA-GKGKTSNKRAAWVRVPAAAAIGDSLEGKQSP------GDVARLSPLRHHSSGGXXXXXXXXXGAAPQTEAERHASLESVLTDVLARNVAVPGAWWAQAFQGGGPFPQGPEGCWSLQYQRANEDPGHRRNQVTGLIGADGDHRFGA-GSGVDLGSVKTEAADADGLDSDGGAPSTPSTV 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7466.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.610e-15264.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.860e-13460.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7466contigH-canaliculatus_M_contigs7466:135..4018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1269
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_001750.1
Cds size1269
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.1475728-CDS-H-canaliculatus_M_contigs7466:134..9681696854084.1475728-CDS-H-canaliculatus_M_contigs7466:134..968Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7466 135..968 -
1696854084.161379-CDS-H-canaliculatus_M_contigs7466:1638..17921696854084.161379-CDS-H-canaliculatus_M_contigs7466:1638..1792Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7466 1639..1792 -
1696854084.177732-CDS-H-canaliculatus_M_contigs7466:2680..28441696854084.177732-CDS-H-canaliculatus_M_contigs7466:2680..2844Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7466 2681..2844 -
1696854084.1901932-CDS-H-canaliculatus_M_contigs7466:3901..40181696854084.1901932-CDS-H-canaliculatus_M_contigs7466:3901..4018Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7466 3902..4018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7466.1.1prot_H-canaliculatus_M_contigs7466.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7466 135..4018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7466.1.1

>prot_H-canaliculatus_M_contigs7466.1.1 ID=prot_H-canaliculatus_M_contigs7466.1.1|Name=mRNA_H-canaliculatus_M_contigs7466.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=423bp
MSGKRTLSLSAYKKSKALAVAPAKKERRLGFGESVSTREARAQELQLETR
VIKHLDELLKKCGKDPGSAKAISNWLCAEGLEGHAKKGLSRILCYAKVWS
RTLRAEGVAPKEKGADKAEAQARVAFAACVCAVSAVDSLSYRFAEARDGE
SELVKMAGEVLTGMMEAMVGAGAKPRARGLHPSEHVQLSGMVESWRKRGA
IPSSSLQAIEKQLSALEPGKSNSVPSDGKNASESTSRGKNGKKRAAWAQA
PAAAAAHSGGGGGSPGTTPSPSASSGRLSPPPRPSSGDHAVASPQTDVER
SAGVEAALKGLLHGVALAGGWWAQAFEGSGPFPQGPEGCWSLQYQRTNED
PGHRQKRIGGPPGFNGDFRGEATGSSGGLGNFRTEAVDGFDSDGAPSTPS
TVPSEASPSPERLSPVPSVKTEG
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mRNA from alignment at H-canaliculatus_M_contigs7466:135..4018-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7466.1.1 ID=mRNA_H-canaliculatus_M_contigs7466.1.1|Name=mRNA_H-canaliculatus_M_contigs7466.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3884bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7466:135..4018- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGGGAAGAGAACCCTGTCGCTGTCGGCTTACAAGAAAAGCAAGGC
GTTAGCTGTCGCACCGGCGAAGAAGGAGCGGAGGCTAGGCTTCGGGGAGT
CTGTCAGCACGCGCGAGGTAAGTGCGTCGCCTCCTCGCACGCGGGAAGGG
CATTAAGTCTTGCAGCTGAGACATCGATCGGCGAGAGATCTGCGGCATCA
GCCAGGACGGGGGGGGGCAGAGTATTGTCTCTTTTCAACGTTTCCAAAGA
GACATCCCGGAAGCTGGATAGACTCACACGGCGTGTACTGCTGTACATCG
AACAGGCTAGGCGGTGCTGCGCCGCTCTTCTGCGGAAAATTATGAAACAC
CTGGCACACAGATTACGGCGGGCGACATCGCTGCTTTACTGCTTTTGCAG
CAGCAGTGTGGTGGCTTTCCGCACAAATATCCGAGGATGTGGAGTAGAGC
AGTGCGTTTCGAAGACACGAGGCGTTTGTGTGCCGTCCTTCCACCTGCGG
CACCCCCTTTCGCCTGTCCACATCGTACCCCCTCGAGGTCCTGCACCTGC
CGCAGGGGCTGCGGCATGGCTAAGGGATTGAAAGACCGCCGTGGACCGCA
ATCCAAGAGTGGTGACTTTATTTTCGTGTTACCTGAAGATGGGTGATCTT
GTGCTTCCGTAGCAAATCCATCACCCCGGATCGGGCGCAGATATCCAACT
TGCACGAGGTTGTCCGTTTTGCTCTTGATGAAAGCTCGAGCTTCACACAG
CTCTCCTCACCAGTCGTCAAGTTTTTCCACGTCGACATCTCTTCTGCCGA
AAGCTATGCCACCGAGGGTTAAATTTTGCGCTCGTTGCCACGGGGAAAAG
CTAACCGCGCAGCAGCCGACACGGAGTGCTTTGGTCGTCGCAGAATGGTC
TCGTGTTATTAAGGGCTTGTCGCCGGGTGGCTGGGCAATCAGTGAACGCC
GCAGGTGGTCCCTCACAAAACAGCGGGGATCTTGCGGTCGACCCGCAGTT
GGGCTCAGAAAAGGCAGCCATGAATTGCTCTCGGGATCCACTCACAGGCG
CTTTCAGGAGTCTTCGGATGCGTCTTTTCGCTCTTGTCGACTGTTGTAGC
TGCTACTAGACTGCTGTGTTCCTTAAACATATTTTCGATCGCGGGCGTGA
CGCTCCCTGCGTCCGTGCGTGCAGGCTCGTGCGCAGGAGTTGCAGCTAGA
AACCCGGGTGATCAAGCATCTCGACGAGCTTTTGAAGAAGTGCGGAAAGG
ACCCAGGTAGCGCTAAAGCGATCAGTAACTGGCTCTGTGCGGAGGGGCTA
GAGGGCCATGCCAAGAAGGGGTTGTCCAGGATTTTGTGGTGAGTGGCGCA
GGGACTGGTTGTTGGATGCCCAGCGGACTGGCTGTCATGCGCCCAAACCC
ATTAGAGTCACGGAATGGCCGGCGACAGCAGCAGCACACCCTGGCACACC
TCTCCGAACAGATTCAGAAACCTTAACGAATGGGGTCCCCACGGGTCGTT
TCACGCCAGATCATGAGGGAAGGCTGGCGCTGAGGCGCTTCTCGGCCGTC
GGTATCTAGTGATAGCGAGGGACTGCGCGCTTTCGAGCGTCGAGGGGAGG
TGACTAGTGTGCCGACCTCCGGATGGCACCCCGGCAGCACCGCATAGACT
CGATTTTCTAGTCCAAGAGGTGCCGACGCACTTCCGCGAACGCGTACCTT
CTTCGGTTTCTAAAAGAAACGATCCTCGGTCCAGCCGGGTCCGCCGCCTA
TCGATAGATGGAACAATCCATCACCATCCCGCGGAAAGTTGTCGAGGAAG
TTTGGCGGCCGTTCATTTTGCGATAGCTCCGAGAGAAAGCGGCCGCCCCG
ACCGCCTCCTACAGCAATTTCCATGGCACCCTGTACGGATGACCTTGCTG
CAACGGCTCCAACCCGCCGACCTCCTCGTGTCGGCGTGTGCAGCTCTCGC
CGTGGCTCTTACCGTACCCACTTTCTTCCTTATTTTGCCGACGAGGGACG
ACTGCCGCTGCATGCGGGCCGATACCTCTTCACGTCTCGGCCCCTCTTCT
CCCCTCTCTCGCCGCCTACAGTTTGAAGGGTCACCCGCCCGTTCCCGTTA
TTGACGGCGTTATCCCTCACAAGCTGCTCGCACACCCTGTCTGCTCTCTG
CCTCTCTATGTACCACCCGTCTCGTCGTCTTCGCGATACCGGGTGCGCAC
GTGCCGTGCTTTTTCGGTGTGTTCAGCTACGCCAAGGTGTGGTCGCGAAC
CCTGCGGGCGGAGGGCGTTGCGCCGAAGGAGAAAGGCGCGGACAAGGCCG
AGGCTCAGGCCAGAGTCGCGTTCGCCGCTTGCGTGTGCGCTGTCAGTGCC
GTCGACAGCCTTTCCTACAGGTTTGCCGAGGTGAGAGAGGCGCGCCGCAA
AAGTTGCTGAGGTTTCGGCGGTCTTGGCGTTCGTGTAGATGATCTGCGTT
GGTCGCTACCCGATGAGGACGCGTGCCTTGCGCCGCAAAAAAAAAAGAGA
CCACGTCTTAAGCAGAAGATGGCGGTGGGTGGGTTCGCGACCTGCTCCTT
GTTGGGTTGGGTGCTTAAAGAAAGTATCAAAACGTGATGTGGCCAAGATC
TTCCGCTGCATGTACCGTGCAGATCAGGGCGATTGGCAATGCGGGCGTAG
CAACTACAACAACGACGACGAGGGTACGAGCGACAACCGCAGACTGCCGC
GGCCGTCGTGGTGCTTATTCCCATGTGTAGCCCCCAGTGTGGCGTGTTGC
AGAAAAACTTCCGCCTTGTACCGTAAACAACCGGCGGCTGTACGCGACGT
CCTCCTTCGTCTTGGTCCCGTACTCGTGCGAGCTTGACACCCCCACTGCG
AACCGCCGCAAAAAAAATACCGGGTGGCGAATGATGCGCCCTCAGCACAC
AGCAGCTGCACTTGGCGTTTGATTACGCTTCTTTTCTGTCCCTCTGAGCT
GACGAAGAGACTCGGCGCCCTTCACAAGCACCGCTATGTACCCTCGTGTC
GCCCTGCCTCACTAAATAACCTTCGGTGGCTCGTCCTCGCCAAAATCAAG
GCGCGAGATGGTGAGTCGGAGCTGGTAAAGATGGCTGGCGAAGTGCTCAC
CGGGATGATGGAGGCCATGGTCGGGGCGGGAGCGAAGCCGCGTGCTCGCG
GCCTGCATCCCTCCGAGCACGTCCAGCTCTCCGGGATGGTCGAGTCATGG
CGGAAGCGCGGCGCGATCCCCTCGTCGTCCCTGCAGGCTATCGAGAAACA
GCTCTCGGCGCTGGAACCCGGCAAGAGCAACAGCGTGCCATCGGACGGGA
AAAACGCCAGCGAGAGCACCAGCAGGGGAAAAAACGGGAAGAAGCGGGCG
GCGTGGGCCCAGGCGCCGGCCGCCGCTGCCGCACACAGCGGCGGCGGCGG
CGGCTCCCCTGGAACGACGCCATCGCCATCGGCGAGCTCGGGCCGCCTGT
CGCCGCCGCCGCGCCCTTCCTCCGGCGATCACGCGGTGGCCTCTCCGCAG
ACGGACGTAGAGCGCAGCGCCGGCGTGGAGGCCGCCCTGAAAGGGCTCTT
GCACGGCGTGGCTCTGGCCGGTGGGTGGTGGGCCCAAGCGTTTGAGGGTA
GCGGCCCGTTCCCCCAGGGTCCCGAGGGTTGCTGGTCGCTGCAGTACCAG
CGGACAAACGAGGATCCGGGGCACCGCCAGAAGCGGATCGGAGGGCCGCC
CGGCTTCAACGGGGACTTCCGCGGAGAGGCCACGGGCAGTAGCGGGGGCC
TGGGGAACTTCAGGACGGAGGCGGTAGACGGGTTTGACAGCGACGGGGCC
CCTTCCACGCCGTCGACGGTGCCGAGCGAGGCGTCACCGTCGCCGGAGAG
GCTGTCGCCGGTACCGTCGGTGAAGACGGAGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7466:135..4018-

>mRNA_H-canaliculatus_M_contigs7466.1.1 ID=mRNA_H-canaliculatus_M_contigs7466.1.1|Name=mRNA_H-canaliculatus_M_contigs7466.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1269bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7466:135..4018- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGGGAAGAGAACCCTGTCGCTGTCGGCTTACAAGAAAAGCAAGGC
GTTAGCTGTCGCACCGGCGAAGAAGGAGCGGAGGCTAGGCTTCGGGGAGT
CTGTCAGCACGCGCGAGGCTCGTGCGCAGGAGTTGCAGCTAGAAACCCGG
GTGATCAAGCATCTCGACGAGCTTTTGAAGAAGTGCGGAAAGGACCCAGG
TAGCGCTAAAGCGATCAGTAACTGGCTCTGTGCGGAGGGGCTAGAGGGCC
ATGCCAAGAAGGGGTTGTCCAGGATTTTGTGCTACGCCAAGGTGTGGTCG
CGAACCCTGCGGGCGGAGGGCGTTGCGCCGAAGGAGAAAGGCGCGGACAA
GGCCGAGGCTCAGGCCAGAGTCGCGTTCGCCGCTTGCGTGTGCGCTGTCA
GTGCCGTCGACAGCCTTTCCTACAGGTTTGCCGAGGCGCGAGATGGTGAG
TCGGAGCTGGTAAAGATGGCTGGCGAAGTGCTCACCGGGATGATGGAGGC
CATGGTCGGGGCGGGAGCGAAGCCGCGTGCTCGCGGCCTGCATCCCTCCG
AGCACGTCCAGCTCTCCGGGATGGTCGAGTCATGGCGGAAGCGCGGCGCG
ATCCCCTCGTCGTCCCTGCAGGCTATCGAGAAACAGCTCTCGGCGCTGGA
ACCCGGCAAGAGCAACAGCGTGCCATCGGACGGGAAAAACGCCAGCGAGA
GCACCAGCAGGGGAAAAAACGGGAAGAAGCGGGCGGCGTGGGCCCAGGCG
CCGGCCGCCGCTGCCGCACACAGCGGCGGCGGCGGCGGCTCCCCTGGAAC
GACGCCATCGCCATCGGCGAGCTCGGGCCGCCTGTCGCCGCCGCCGCGCC
CTTCCTCCGGCGATCACGCGGTGGCCTCTCCGCAGACGGACGTAGAGCGC
AGCGCCGGCGTGGAGGCCGCCCTGAAAGGGCTCTTGCACGGCGTGGCTCT
GGCCGGTGGGTGGTGGGCCCAAGCGTTTGAGGGTAGCGGCCCGTTCCCCC
AGGGTCCCGAGGGTTGCTGGTCGCTGCAGTACCAGCGGACAAACGAGGAT
CCGGGGCACCGCCAGAAGCGGATCGGAGGGCCGCCCGGCTTCAACGGGGA
CTTCCGCGGAGAGGCCACGGGCAGTAGCGGGGGCCTGGGGAACTTCAGGA
CGGAGGCGGTAGACGGGTTTGACAGCGACGGGGCCCCTTCCACGCCGTCG
ACGGTGCCGAGCGAGGCGTCACCGTCGCCGGAGAGGCTGTCGCCGGTACC
GTCGGTGAAGACGGAGGGA
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