mRNA_H-canaliculatus_M_contigs7465.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7465.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7465.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL/TRIO, (N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 2.420e-151
Identity = 322/550 (58.55%), Postives = 349/550 (63.45%), Query Frame = 1
Query:    1 RVLRRRTLEGGGGGRREGVVATEAVEGHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGTGPRQEDLPSLADALLAAGSRGGRRSAKRAXXXXXXXXXPAPSSVSSPAGSGVFVKPRVASYLLATPEEGGKLG----SQDEDXXXXXXXXXXXXXXXXXXXXXXHWGSAGXXXXXXXXXXXXXXXXXXXXXXXXXSVATSDEEFFDALAELDQSNTCRGGGTRRRNRSSRLGSRSGSDVEAGRCFTSSENSRRAPPLSGHGGESAVAGCQGRQPSDGAAGDGEEGGPAEEE----GRTKRLL------SALLGWCYTPVLRRLDRKCVDQLSRWLCYANATSASLAVAVVVTGAFSLSRAKVLGLQWCAVTAVCLGSLLLLLALIGTAGARLRNRFTLLGFAALEAAVAFGMLVSGAWCLALAGGSATLSDLTWEAMHHEIRNMEEERASWDEERRFRQLRRCFLEANGLCTIFACVCAG 1608
            RVLRRRTLE           A     GHIVDTAVVVIDT GLTLRHVTKAFVRLFK+RA+MDQLLFPE+LGKCFIVNTP LFSYVW+MFSP+VDERTRSKI+IIS+ QDWTKALQEIADPDQLSPEYGGTG R+EDLPSLADAL AAGSRGG RS    XXXXXXXX                V     S    +P E  +       +D                         W SA  XXXXXXXXXXXX            SVATSDEEFFDALAELD  +  R  G                                                +G     G    G +G P   E     R + LL      SA+LGWCY PVLRRL++K VD+L RWLC+ANA SASLAVAVVVTGAFSLSRA VLGLQWCAVTAVCLGSLLLLLAL+G AGARLRNRF+LLGFA LE AVA GML+SG WCLALAGGSATLSDLTWEAM+ EIRNMEEE A  D+E+RF+QLRR   EAN LCTIFACVC G
Sbjct:  167 RVLRRRTLEX----XXXXXXAAAERAGHIVDTAVVVIDTGGLTLRHVTKAFVRLFKLRAHMDQLLFPEMLGKCFIVNTPSLFSYVWSMFSPLVDERTRSKISIISKPQDWTKALQEIADPDQLSPEYGGTGRRKEDLPSLADALYAAGSRGGSRSXXXXXXXXXXXXCXXXXXXXXXXXXXXKVGVAARSQARLSPPEPPQQEHLEHEEDVAIKGSEHRGWFGGRAATWGPVGWFWSSAWGXXXXXXXXXXXXGVAEGMREDAEESVATSDEEFFDALAELDHFHASRSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLAEELG----GNDGRPRRPEHAAVDRGRALLPGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAMNKEIRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTG 708          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL-TRIO (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 4.780e-115
Identity = 287/577 (49.74%), Postives = 317/577 (54.94%), Query Frame = 1
Query:  181 MDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGTGPRQEDLPSLADALLAAGSRGGRR-----------SAKRAXXXXXXXXXPAPSSVSSPAGSGVF-----VKPRVASYLLATPEEGGKLGSQDEDXXXXXXXXXXXXXXXXXXXXXXHW-GSAGXXXXXXXXXXXXXXXXXXXXXXXXXSVATSDEEFFDALAELDQSNTCRGGGTRRRNRSSRLGSRSGS-----------------DVEAGRC---------FTSSENSRRA-------PPLSGHGGESAVAGCQGRQPSDGAAGDGEEGGPAEEEGRTKRL-----LSALLGWCYTPVLRRLDRKCVDQLSRWLCYANATSASLAVAVVVTGAFSLSRAKVLGLQWCAVTAVCLGSLLLLLALIGTAGARLRNRFTLLGFAALEAAVAFGMLVSGAWCLALAGGSATLSDLTWEAMHHE----------------------------------------------IRNMEEERASWDEERRFRQLRRCFLEANGLCTIFACVCAG 1608
            MDQLLFPE+LGKCFIVNTP LFSYVW+MFSP+VDERTRSKI+IIS+ QDW KALQEIADPDQLSPEYGGTG RQEDLPSLADAL AAGSRG              +A            P P+                V P   + L             +E+                       W  S+   XXXXXXXXXXXXXXXXXXX    S+ TSDEEFFDALAELD  +  R  G                                 DVE GR          +  S   + A       PP  G G    VAG   RQ      G G  GG      R   L     +SA+LGWCY PVLRRL++K VD+L RWLC+ANA SASLAVAVVVTGAFSLSRA VLGLQWCAVTAVCLGSLLLLLAL+G AGARLRNRF+LLGF  LE AVA GML+SG WCLALAGGSATLSDLTWEA+++E                                              IRNMEEE A  D+E+RF+QLRR   EAN LCTIFACVC G
Sbjct:    1 MDQLLFPEMLGKCFIVNTPSLFSYVWSMFSPLVDERTRSKISIISKPQDWAKALQEIADPDQLSPEYGGTGRRQEDLPSLADALYAAGSRGXXXXXXXXXXXXXXAACNGNASGGSNENPLPNGXXXXXXXXXXXXXXGVAPGRQARLXXXXXXXXXHLEHEEEVAIKGGEHRGWFGGRAVTWGPVGWLWSSAWGXXXXXXXXXXXXXXXXXXXDAEESITTSDEEFFDALAELDHFHASRSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMDVEVGRSPSGTAVDAVWRRSWGGKAADLADLSTPPSIGRG--VRVAGPPPRQ------GLGHGGGGGVSVARRALLSGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFVVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAINNEREMSGTKEDFLSGAQSRLVLLGSTGLVLALFSVVGPCLLASVLLGKIRNMEEETARRDDEKRFKQLRRSAQEANALCTIFACVCTG 569          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL-TRIO (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.370e-30
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   79 GHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGTG 393
            G IVD+ VV+IDT G+ +R VT  F+ L K  A++DQ ++PE+LG+ FI+NTPGLF+YVW MF+P++D RTR KI I SR +DW  AL E+   D L PEYGGTG
Sbjct:  187 GAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTG 291          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL/TRIO, (amine-terminal domain protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M251_TETTS)

HSP 1 Score: 77.0 bits (188), Expect = 1.390e-11
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   79 GHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGG 387
            GH VD  V ++D  G+ ++ ++K      ++ + + Q  +PEILG+ FIVN P LFS VWA+  P +DE+TR+KI II     + + L EI D D +    GG
Sbjct:  151 GHRVDQTVTILDLKGIPMKMLSKQVYNFIQLASKVAQENYPEILGRMFIVNAPMLFSGVWAVIKPWIDEKTRNKITIIG--SGFKEKLLEIIDIDNIPDFLGG 251          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL-TRIO (domain-containing protein n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L1LAY5_THEEQ)

HSP 1 Score: 75.5 bits (184), Expect = 2.820e-11
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   61 ATEAVEGHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGTGP 396
            A     G  V+  + ++D  G  +  +             + Q  +PE+LGK   VNTPG+FS +WA+FS ++D++T  KI +IS + +    + E+ +PDQL    GGT P
Sbjct:  162 AASLKSGKRVEQLLTILDLRGFQMSQINTKLKAFLSAMTLVTQNYYPELLGKLLFVNTPGMFSALWAIFSGLLDKKTLGKITVISSKTESRAKILELVEPDQLPEFLGGTQP 273          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL-TRIO (domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YEY5_PLABS)

HSP 1 Score: 75.1 bits (183), Expect = 3.620e-11
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   79 GHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGG 387
            G  V   V ++D  GL++ H + A     K  A +DQ  +PEIL + FIVN P +FS VW M  P +DE+T+SKI+I SR+ D  +++ E+ + D L    GG
Sbjct:  155 GRPVSQQVTILDMDGLSMSHASSAVYAYIKGCAEIDQSYYPEILSRMFIVNAPAVFSVVWKMIKPWLDEKTQSKISI-SRKSD-AESILELVEADVLPEFLGG 255          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL-TRIO (domain-containing protein n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0AX84_THEEQ)

HSP 1 Score: 75.5 bits (184), Expect = 1.430e-10
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   61 ATEAVEGHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGTGP 396
            A     G  V+  + ++D  G  +  +             + Q  +PE+LGK   VNTPG+FS +WA+FS ++D++T  KI +IS + +    + E+ +PDQL    GGT P
Sbjct:  787 AASLKSGKRVEQLLTILDLRGFQMSQINTKLKAFLSAMTLVTQNYYPELLGKLLFVNTPGMFSALWAIFSGLLDKKTLGKITVISSKTESRAKILELVEPDQLPEFLGGTQP 898          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: CRAL-TRIO (domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QBH9_PSEPJ)

HSP 1 Score: 72.0 bits (175), Expect = 7.440e-10
Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   61 ATEAVEGHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGT 390
            A   ++G  VD  V ++D  G +++ ++K      ++ + + Q  +PEILG+ FIVN P LF+ +W +  P +DE+TR+KI I+  +  + + L E+ D + L    GGT
Sbjct:  156 ACSVLKGEKVDQTVTILDLKGASMKMMSKTVYNFIQLASKVAQDNYPEILGRMFIVNAPMLFTGIWQIIKPWLDEKTRNKITIMGGK--YKEKLLELIDAENLPDFLGGT 263          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: Protein (real-time n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226EV67_FOLCA)

HSP 1 Score: 67.0 bits (162), Expect = 1.020e-8
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  130 LRHVTKA-FVRLFKMRAYMD-----QLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAII-SRRQDWTKALQEIADPDQLSPEYGGTGPRQEDLPSLAD 426
            L+H T A F     + A +D     +  +PE LG+C I+N+P +FS ++A+  P + E T +KI+I  S   +W KA++E+ DP QL   YGG    + + P+L D
Sbjct:  157 LKHFTYAKFAHKRSVEALLDLVKIYEANYPETLGRCLIINSPRIFSMLFAIVKPFLSENTVNKISIFDSNEANWKKAVEEVIDPSQLPIRYGG----RVENPALMD 258          
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KRP3_EUPCR)

HSP 1 Score: 66.2 bits (160), Expect = 2.120e-8
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   61 ATEAVEGHIVDTAVVVIDTAGLTLRHVTKAFVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSKIAIISRRQDWTKALQEIADPDQLSPEYGGTGPRQED 408
            A  A  G  ++    +I   G T++ + +      K+   + Q  +PEI+GK  IV++P +F   WA+ SP +DE+TR+KI+I+  +  + K L E  DP+ +  + GG     ED
Sbjct:  153 AASAAAGKKIEQTFNLISIKGFTMKKLRQKTRNFIKLAVNIGQDNYPEIMGKMLIVDSPLIFRGAWALISPFIDEKTRTKISILGGK--YQKKLFEHVDPENVPSDLGGECTCSED 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7465.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CRAL/TRIO,2.420e-15158.55N-terminus family protein n=1 Tax=Ectocarpus silic... [more]
CRAL-TRIO4.780e-11549.74domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
CRAL-TRIO3.370e-3057.14domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
CRAL/TRIO,1.390e-1139.81amine-terminal domain protein n=1 Tax=Tetrahymena ... [more]
CRAL-TRIO2.820e-1133.04domain-containing protein n=1 Tax=Theileria equi s... [more]
CRAL-TRIO3.620e-1140.78domain-containing protein n=2 Tax=Plasmodiophora b... [more]
CRAL-TRIO1.430e-1033.04domain-containing protein n=1 Tax=Theileria equi s... [more]
CRAL-TRIO7.440e-1033.64domain n=1 Tax=Pseudocohnilembus persalinus TaxID=... [more]
Protein1.020e-836.79real-time n=2 Tax=Folsomia candida TaxID=158441 Re... [more]
Hypothetical2.120e-831.90protein (Fragment) n=1 Tax=Euplotes crassus TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7465contigH-canaliculatus_M_contigs7465:41..5276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LG14
PFAMsCRAL_TRIO,EBP
Model size1611
Max annot lvl2759|Eukaryota
KEGG koko:K19996
Hectar predicted targeting categoryother localisation
Exons8
Evalue3.97e-152
EggNOG OGsKOG1471@1|root,KOG4826@1|root,KOG1471@2759|Eukaryota,KOG4826@2759|Eukaryota
Descriptioncholestenol delta-isomerase activity
Cds size1611
COG categoryS
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7465.1.1prot_H-canaliculatus_M_contigs7465.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7465 41..5276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.026741-CDS-H-canaliculatus_M_contigs7465:40..1631696854084.026741-CDS-H-canaliculatus_M_contigs7465:40..163Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 41..163 -
1696854084.0392182-CDS-H-canaliculatus_M_contigs7465:1114..14441696854084.0392182-CDS-H-canaliculatus_M_contigs7465:1114..1444Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 1115..1444 -
1696854084.054079-CDS-H-canaliculatus_M_contigs7465:1986..23371696854084.054079-CDS-H-canaliculatus_M_contigs7465:1986..2337Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 1987..2337 -
1696854084.0661116-CDS-H-canaliculatus_M_contigs7465:2648..29861696854084.0661116-CDS-H-canaliculatus_M_contigs7465:2648..2986Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 2649..2986 -
1696854084.0762403-CDS-H-canaliculatus_M_contigs7465:3154..33231696854084.0762403-CDS-H-canaliculatus_M_contigs7465:3154..3323Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 3155..3323 -
1696854084.0874453-CDS-H-canaliculatus_M_contigs7465:3961..41231696854084.0874453-CDS-H-canaliculatus_M_contigs7465:3961..4123Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 3962..4123 -
1696854084.098371-CDS-H-canaliculatus_M_contigs7465:5039..51281696854084.098371-CDS-H-canaliculatus_M_contigs7465:5039..5128Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 5040..5128 -
1696854084.1170127-CDS-H-canaliculatus_M_contigs7465:5227..52761696854084.1170127-CDS-H-canaliculatus_M_contigs7465:5227..5276Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7465 5228..5276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7465.1.1

>prot_H-canaliculatus_M_contigs7465.1.1 ID=prot_H-canaliculatus_M_contigs7465.1.1|Name=mRNA_H-canaliculatus_M_contigs7465.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=537bp
RVLRRRTLEGGGGGRREGVVATEAVEGHIVDTAVVVIDTAGLTLRHVTKA
FVRLFKMRAYMDQLLFPEILGKCFIVNTPGLFSYVWAMFSPMVDERTRSK
IAIISRRQDWTKALQEIADPDQLSPEYGGTGPRQEDLPSLADALLAAGSR
GGRRSAKRAAAAVEAAAAPAPSSVSSPAGSGVFVKPRVASYLLATPEEGG
KLGSQDEDEEAASKAGGRGGWLGATAGAAAHWGSAGWFWTTLWGGDGGGG
QGAGAQDDAEESVATSDEEFFDALAELDQSNTCRGGGTRRRNRSSRLGSR
SGSDVEAGRCFTSSENSRRAPPLSGHGGESAVAGCQGRQPSDGAAGDGEE
GGPAEEEGRTKRLLSALLGWCYTPVLRRLDRKCVDQLSRWLCYANATSAS
LAVAVVVTGAFSLSRAKVLGLQWCAVTAVCLGSLLLLLALIGTAGARLRN
RFTLLGFAALEAAVAFGMLVSGAWCLALAGGSATLSDLTWEAMHHEIRNM
EEERASWDEERRFRQLRRCFLEANGLCTIFACVCAG*
back to top

mRNA from alignment at H-canaliculatus_M_contigs7465:41..5276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7465.1.1 ID=mRNA_H-canaliculatus_M_contigs7465.1.1|Name=mRNA_H-canaliculatus_M_contigs7465.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5236bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7465:41..5276- (Hapterophycus canaliculatus Oshoro7m male)
CGGGTCCTGCGCCGCCGAACGCTGGAGGGCGGCGGAGGCGGCAGGCGGGG TAGTGGCGGTGGCGGCGGCGATGAAGGGAAGGAAGGAGAGAGCGCTGGGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAGGGAGAAGAGAGAG GGGGTGGTCGCGACGGAGGCGGTGGAAGGGCACATCGTGGACACGGCGGT GGTTGTTATCGACACGGCCGGGCTGACGCTGCGACACGTGAGTGATCCAC GGAAAGAGGAGTCGGCTACGGTACGCGCTGTTGCTGATAGTGCTCGACGA TTCGGCGGCGGCGAACGGTTTGTCATCCGACGACGGGCGCCGCCGCAGTC CCGCGTGTTGTCCCTACTCGTTGAAGAAGGGAAGTAGCGCCGTGGCCTCT TGCATGTGAACGGCGTTGATCTTGTGGTGTCGAGCTCCGGAACAGGTCCG TGACACGGAGTTGTTGTTGCTGTTGTTCTTGTTTTCGGCAAAACGTTATT CTGCGCTCCGATCCAGCAGACGCGTGCACAAGAAAGTGTGCCAGGGACAC AGAGGGTGGCAGTAGAGGAACGAGCTCTCACTGATATACACACGCAGACG ACTGGCATTAACCGGAATCCGTGATTTTCTGTACCCATCTTTACACCGTC CTCCAGCACCGCGTGCTCGTAGTCAGCGTTGCGCGTGCGGTGGGGGAAGT CCAGGACCGTCGGTTGAAGGGTGATCGCATTTTTTAATCGTTTTTTCATC TCTCCTCGCCGATGTACCGTTTGGCGACGATCCGAGGAGGAGCCCAGCGG TCTTTGCTGCTTTGCTGTGAAAGAAAGGTTAGGGTTCGTACGCTCCGAGG CACAGTAGCGATTTGTGAGACGCATGCAGCGCTTGCTTGGCCCGATCGCC CTCAGTCTCCGTCGGGGACGAAAACGGTTTTTGGTGACCCCCGCGTGCTC TTCAGCAACTCGGAAATATTCTGCGAGTACGAGTACGTGCAAAATAGCGG AAAGGAGGCAATTGCGGACCGCCTAAAGCCCCAGGGAACAGCCCCAGGGA ACAAAAACTAAATCTTTGGGAAAACGCCTCCCTTGATTTTTGCCGTCCAC GGGCGGCGGCGCAGTGTTCGCCCGACTAACGAACGTCTGTTCTGCGGCTG AAGGTGACGAAGGCTTTCGTGCGGCTGTTCAAGATGCGGGCCTACATGGA CCAGCTCCTCTTCCCGGAGATACTTGGGAAGTGCTTCATCGTCAACACCC CTGGCCTGTTCAGCTACGTGTGGGCCATGTTCTCTCCCATGGTCGACGAG CGCACCCGGTCCAAGGTGTGTCAAGGATCGATTCGCTTTTGTGTGCAGGC TGCGTTGGAGGGGGGAAGAGGGAAGGTTGCCGGACAGCTGAAGGATTGAG GGCGCCGGTCCCCGTTTCCGCCGCCGGGGTGTTCCAGCACCCGAGCAGGC CAGTTCATTCCCTGTAGCGTCTAGTTTTTGCCCGTGTGCTTTACTCTTGT GGCCGTTTTTGCCCACTCGCCTGGCAGGGAAGCATCTTCTTTCGAGGCTA GTGCGCATGTTTTCTCTCTCTCTCTCGCGTCATCGCTCTCTATGGAGGAA AAAGAGTGAACAGCACCAAAGGAACACCCTCCTCTGAGCAACCTGTAGCG ACTTTTTGTCCAGGCCAGCGGCAGTAAGCGTGGCCCTCGAAACCGCAAAC CCCCCGTCCAGCCGGAAATCGGCGACCAAACGTGGTCTCCACCGTTGCCT TTTGCTTGTCACCGAAAGCATTTTGCTGCCCACCAATCGAACCAAACGCT GTACAAGGAGATCGACGCTTTCCCCCCGATGGTCAAAATCACCAAGCGAA GACTAGCCGCCTGCCGCTCGAAACGACTGCTGTTGCGCTAACGTGCTAGC GTCCGGCGCCGGGCATGTCGATCCGGGGGGAAATCGCAAAAACTCTCGCG CAGATCGCCATAATCTCACGACGGCAAGACTGGACGAAGGCGCTGCAGGA AATCGCCGACCCCGACCAGCTGTCGCCGGAGTACGGCGGGACCGGACCGA GGCAAGAAGACCTCCCTTCGCTCGCCGACGCGCTGCTTGCGGCAGGGAGC CGCGGCGGCCGCAGGAGCGCAAGTGCCGCCGAAGCGACAGCGGCAGCACT AGCACCAGCACCAGCACCAGCGGCAGCGGGAGCGGCACCAGCAGCAGCGG CACCAGCAACAGCGGCACCAGCAGCAGCAGAGGTAGCATCAGCACCGCCA GGACCACCTGCGGCAACAGCGACAAAGGCAGCAGCAACAGAAAGAGCAGC AGCAGCAGTAGAAGCAGCGGCGGCGCCAGCGCCGTCGTCGGTGTCGTCGC CTGCAGGCAGCGGCGTGTTCGTGAAGCCGCGCGTAGCATCGTACCTCCTC GCCACTCCGGAGGAGGGGGGGAAACTCGGAAGCCAAGACGAGGACGAAGA GGCGGCGAGCAAGGCGGGGGGTCGTGGAGGATGGCTCGGGGCTACCGCTG GGGCAGCGGCGCACTGGGGGTCCGCGGGTTGGTTTTGGACGACGTTGTGG GGGGGGGACGGAGGCGGTGGGCAGGGCGCGGGTGCGCAGGACGATGCGGA GGAATCGGTGGCGACGTCGGACGAAGAGGTGCGAGCGTTCGTCGGAACAC TTCTTGTTCTTGCTCTTCTTCTCTTCTACCCGTGTGTACGTGAATCCGTC GCTGTCAGAGCTGTGGAAAAGCATAAGCGTCGCAGCGGGGAGGCGTGTAC CGTCTGCCGCAGCCTCCCTACGTCCAGCCACTCGACGTCCGTGCAGGTTC CGATGTGACGGTTTCCCTCTTCCTGTCCTCAGCCCGCCATCATTTTGTGT ACAGCACGGCGGGGCCCAACCGCGCTGATTATTTCTCGGCTGCCTTTCCA CGGTTGCACACGCGTATGCAAAATGCCCCCCCCCCACAGTTTTTCGACGC GCTAGCGGAGCTAGACCAGTCTAATACCTGCCGTGGCGGTGGAACCCGGC GGCGAAATCGCAGCAGCCGGCTAGGGAGCAGAAGCGGCAGCGACGTCGAG GCCGGTCGCTGCTTTACCTCGTCCGAAAACAGCCGGAGGGCGCCGCCGCT CTCCGGGCATGGGGGGGAATCGGCGGTCGCCGGATGTCAAGGAAGGCAGC CGTCGGATGGGGCGGCTGGGGACGGCGAGGAGGGCGGGCCAGCGGAAGAG GAGGGAAGAACGAAGCGGCTGCTGTCCGCGCTGCTGGGGTGGTGCTACAC GCCTGTGCTGCGGAGGCTTGACAGGAAGTGCGTCGACCAGGTCAGTCCGT CAGCGCGCTGGGCTGGGCGTGCCTTTACTCGGCTTTCCTGTTTTTCATCA GAGCTTGTGAGTGCGTCGTGTCGTTGGTCCTCCACCGACGCCTGCAGCGC AAAGCCTGGGGAAACCGCTTCCGGCGCGTGGCAAAGGCCAGCAGGCAACC GCATTACGAGGAGGCCGCTGCCGGCGGCAGGTCTGCTGCTTCCAGACGCT CCTGCCTTTCGAATGGCGCTGTTTTGTTTTTACCGCTCTGCTTCCCTCTC GTGTGCTGCGTTTCCCGTCACCCCTCGTCCGGCTCCCCTTCGGCCGAACA CCCCCGGTGGAAGCCGTCTCCGCGATCCTCGACGCAGCCTCGCTCAGCCG CTCTAACGTCGCTCCGGTGCGTCCCGTCTCTTGCTTTGCGCCCCGCCCCC TACCGCCGAGGTGGAGCTTCCGTCCCGCTCGAGCTCGCCGTGGTGTTGTC GCTCGCCGTCCCCCTTACGAACCACCTCCCGCCTTCTCCTGTGGTCGAAC TCCAACGCGCGTGTGCTCTCTCCCCGGCGCAGCTGTCCCGCTGGCTCTGC TACGCCAACGCGACCTCGGCGTCGCTAGCGGTCGCCGTCGTCGTCACCGG AGCCTTCAGCCTCTCGAGGGCGAAGGTGCTCGGCCTCCAGTGGTGCGCCG TGACCGCCGTCTGCCTCGGCTCCCTCCTCCTACTCCTGGCGCTCATCGGC ACCGCCGGCGCTCGCCTGCGAAACCGGTTCACCCTGCTTGGCTTCGCCGC GCTCGAGGCGGCCGTGGCCTTCGGGATGCTCGTGAGCGGAGCGTGGTGCC TGGCGCTCGCCGGCGGGTCTGCCACGCTGTCGGACCTCACGTGGGAAGCC ATGCATCATGAGGTGAGGGAGGGAGGGACGGAGGGAAGAAGGGTGAGGCT TTGCGCGGGCCGCCGGTGCTCACACGGGGTCCGGCTGCGGGCAGGGCGAA CGCGCGGGGGTTTCGTTGTAGACTTTTTTGAGGCGTTTCGCCCCGGGTTG GTGTCTTCCCGCGTCCCCGGCGGCCTTGCGCGCGCTGTCCCTGGCGGCAC CGAGCGGACGCTATCCTTGCTCTGTCGAATCGGCTGGTACGGCGTTGTGC CAGTAGTAGCAGTTGTCTTTCGTGACGTTAGTAGTGCTGCTGTCCTCCGC GATTCTATCGCGGTGGAGGAAATCAGAGTCTTGGCTCCTCATCATCATTT TCATTCTTGTAGATCGAACCGGATTGATTCGAGCAGGGCGCGAGACTCTG GGTTGTTACCGACCCGCCCTGAAGGTAGGCGAGACTCTTGCTCCCCTCCG TCCCCCGAGCAAATTTGCTGTTGGTCCTTTAGTGTCGTCAAACGCACCGA ACCCTCACTGCCATGTGGAATCCTGCACGAGCCTCCTGAGACGCCTTGCC TTCTGAGGCGTGTGTGTGGCTGAGAACGTATTCCTTCGGTGTTGTTGGCT CTTCTTTTTTAACACGTAAAATAAATTGCCGTAAGTTGCACGAAATTCCC CCTTTTTGTGTCCACGCTTTCCTCCCAACCTCACCAATGAACCCTCGTTT TTCGGAACTCAACGGAAGCCTCGAGCTACCCCTCGAACGACGCACCTCCG GAGGTGTCCCCACAGTGTTGTCACGTATTTTCCTTAAAGCAACACACGCT ACGTTTTTTTGTTTGTCTCCTCCAGCGCGACATGTCCGGCACGAAGCAGG ACTTCCTCGACGGCGCCCAGAACAGACTGCTCGCTCTCGGAGCGTCAGGC CTGGTGCTAGCCCTCTTCTCGGTCGTCGGCCCGTGCCTCCTGGCCTCCGT CCTGCTGGGCAAGATCAGGAACATGGAGGAGGAGCGGGCTAGCTGGGACG AGGAGAGGCGTTTCCGGCAGCTCCGCCGCTGCTTCCTGGAGGCCAACGGT CTCTGCACCATCTTCGCGTGTGTTTGCGCCGGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7465:41..5276-

>mRNA_H-canaliculatus_M_contigs7465.1.1 ID=mRNA_H-canaliculatus_M_contigs7465.1.1|Name=mRNA_H-canaliculatus_M_contigs7465.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1611bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7465:41..5276- (Hapterophycus canaliculatus Oshoro7m male)
CGGGTCCTGCGCCGCCGAACGCTGGAGGGCGGCGGAGGCGGCAGGCGGGA
GGGGGTGGTCGCGACGGAGGCGGTGGAAGGGCACATCGTGGACACGGCGG
TGGTTGTTATCGACACGGCCGGGCTGACGCTGCGACACGTGACGAAGGCT
TTCGTGCGGCTGTTCAAGATGCGGGCCTACATGGACCAGCTCCTCTTCCC
GGAGATACTTGGGAAGTGCTTCATCGTCAACACCCCTGGCCTGTTCAGCT
ACGTGTGGGCCATGTTCTCTCCCATGGTCGACGAGCGCACCCGGTCCAAG
ATCGCCATAATCTCACGACGGCAAGACTGGACGAAGGCGCTGCAGGAAAT
CGCCGACCCCGACCAGCTGTCGCCGGAGTACGGCGGGACCGGACCGAGGC
AAGAAGACCTCCCTTCGCTCGCCGACGCGCTGCTTGCGGCAGGGAGCCGC
GGCGGCCGCAGGAGCGCAAAAAGAGCAGCAGCAGCAGTAGAAGCAGCGGC
GGCGCCAGCGCCGTCGTCGGTGTCGTCGCCTGCAGGCAGCGGCGTGTTCG
TGAAGCCGCGCGTAGCATCGTACCTCCTCGCCACTCCGGAGGAGGGGGGG
AAACTCGGAAGCCAAGACGAGGACGAAGAGGCGGCGAGCAAGGCGGGGGG
TCGTGGAGGATGGCTCGGGGCTACCGCTGGGGCAGCGGCGCACTGGGGGT
CCGCGGGTTGGTTTTGGACGACGTTGTGGGGGGGGGACGGAGGCGGTGGG
CAGGGCGCGGGTGCGCAGGACGATGCGGAGGAATCGGTGGCGACGTCGGA
CGAAGAGTTTTTCGACGCGCTAGCGGAGCTAGACCAGTCTAATACCTGCC
GTGGCGGTGGAACCCGGCGGCGAAATCGCAGCAGCCGGCTAGGGAGCAGA
AGCGGCAGCGACGTCGAGGCCGGTCGCTGCTTTACCTCGTCCGAAAACAG
CCGGAGGGCGCCGCCGCTCTCCGGGCATGGGGGGGAATCGGCGGTCGCCG
GATGTCAAGGAAGGCAGCCGTCGGATGGGGCGGCTGGGGACGGCGAGGAG
GGCGGGCCAGCGGAAGAGGAGGGAAGAACGAAGCGGCTGCTGTCCGCGCT
GCTGGGGTGGTGCTACACGCCTGTGCTGCGGAGGCTTGACAGGAAGTGCG
TCGACCAGCTGTCCCGCTGGCTCTGCTACGCCAACGCGACCTCGGCGTCG
CTAGCGGTCGCCGTCGTCGTCACCGGAGCCTTCAGCCTCTCGAGGGCGAA
GGTGCTCGGCCTCCAGTGGTGCGCCGTGACCGCCGTCTGCCTCGGCTCCC
TCCTCCTACTCCTGGCGCTCATCGGCACCGCCGGCGCTCGCCTGCGAAAC
CGGTTCACCCTGCTTGGCTTCGCCGCGCTCGAGGCGGCCGTGGCCTTCGG
GATGCTCGTGAGCGGAGCGTGGTGCCTGGCGCTCGCCGGCGGGTCTGCCA
CGCTGTCGGACCTCACGTGGGAAGCCATGCATCATGAGATCAGGAACATG
GAGGAGGAGCGGGCTAGCTGGGACGAGGAGAGGCGTTTCCGGCAGCTCCG
CCGCTGCTTCCTGGAGGCCAACGGTCTCTGCACCATCTTCGCGTGTGTTT
GCGCCGGGTGA
back to top