mRNA_H-canaliculatus_M_contigs74627.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74627.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74627.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74627.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.510e-12
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 EVEFEPMPPPREESPTKKGVLLLVATVGLLGSYVTWGFMQEMV 129
            EV+FEP+ P REE+P ++ +LL  ATVGLLGSYVTWGFMQEMV
Sbjct:   57 EVDFEPVAPQREETPMQRAILLFFATVGLLGSYVTWGFMQEMV 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74627.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.510e-1272.09protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74627contigH-canaliculatus_M_contigs74627:280..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7H9
PFAMsUAA
Model size129
Max annot lvl2759|Eukaryota
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
Hectar predicted targeting categorysignal anchor
Exons1
Evalue9.9e-11
EggNOG OGsCOG0697@1|root,KOG1581@2759|Eukaryota
DescriptionUDP-galactose transmembrane transporter activity
Cds size111
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.9564502-CDS-H-canaliculatus_M_contigs74627:279..3901696854083.9564502-CDS-H-canaliculatus_M_contigs74627:279..390Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74627 280..390 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.9688823-UTR-H-canaliculatus_M_contigs74627:390..4081696854083.9688823-UTR-H-canaliculatus_M_contigs74627:390..408Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74627 391..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74627.1.1prot_H-canaliculatus_M_contigs74627.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74627 280..390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74627.1.1

>prot_H-canaliculatus_M_contigs74627.1.1 ID=prot_H-canaliculatus_M_contigs74627.1.1|Name=mRNA_H-canaliculatus_M_contigs74627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=37bp
MPPPREESPTKKGVLLLVATVGLLGSYVTWGFMQEMV
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mRNA from alignment at H-canaliculatus_M_contigs74627:280..408-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74627.1.1 ID=mRNA_H-canaliculatus_M_contigs74627.1.1|Name=mRNA_H-canaliculatus_M_contigs74627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=129bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74627:280..408- (Hapterophycus canaliculatus Oshoro7m male)
GAGGTGGAGTTCGAGCCGATGCCCCCGCCAAGGGAAGAGTCGCCGACCAA
AAAGGGTGTCCTGCTCCTGGTCGCGACGGTGGGACTGCTGGGTTCTTACG
TCACTTGGGGTTTCATGCAGGAAATGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74627:280..408-

>mRNA_H-canaliculatus_M_contigs74627.1.1 ID=mRNA_H-canaliculatus_M_contigs74627.1.1|Name=mRNA_H-canaliculatus_M_contigs74627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=111bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74627:280..408- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCCCCGCCAAGGGAAGAGTCGCCGACCAAAAAGGGTGTCCTGCTCCT
GGTCGCGACGGTGGGACTGCTGGGTTCTTACGTCACTTGGGGTTTCATGC
AGGAAATGGTG
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