mRNA_H-canaliculatus_M_contigs7461.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7461.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7461.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7461.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.850e-27
Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 DKIVFNPGVVETSILLGVHEDGKAEPDEKFDLLLFEPWGGARLGAQRRTTVTIVDAEGNGTVTHHSKTSV 210
            D++VF+PGVVE SILLGVHEDG+AE +E FDL L EPWGGARLG+Q+RT VTI+DAE NGTVTHHS TS+
Sbjct:  348 DELVFDPGVVELSILLGVHEDGEAETEEYFDLFLLEPWGGARLGSQQRTRVTILDAESNGTVTHHSTTSL 417
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BLAST of mRNA_H-canaliculatus_M_contigs7461.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LPZ1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.000e-6
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    7 IVFNPGVVETSILLGVHEDGKAEPDEKFDLLLFEPWGGARLGAQRRTTVTIVDAEGNGTVTHHSKTSVH 213
            IVF  G +  S L+ +++D   EP+E F + L  P GGA LG Q+RT VTI+D + + T + +   ++H
Sbjct:  127 IVFRQGQINASFLVTINDDRILEPNETFSVHLSNPTGGASLGTQQRTIVTIIDDDSDMTCSDNVGANLH 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7461.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.850e-2775.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.000e-639.13protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7461contigH-canaliculatus_M_contigs7461:56..289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIF9
PFAMsActin,CH,Calx-beta,Filamin,Ist1,PA14
Model size235
Max annot lvl2759|Eukaryota
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.67e-28
EggNOG OGsCOG5069@1|root,KOG0518@2759|Eukaryota
Descriptionregulation of membrane repolarization during atrial cardiac muscle cell action potential
Cds size234
COG categoryZ
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.786793-CDS-H-canaliculatus_M_contigs7461:55..2891696854083.786793-CDS-H-canaliculatus_M_contigs7461:55..289Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7461 56..289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7461.1.1prot_H-canaliculatus_M_contigs7461.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7461 56..289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7461.1.1

>prot_H-canaliculatus_M_contigs7461.1.1 ID=prot_H-canaliculatus_M_contigs7461.1.1|Name=mRNA_H-canaliculatus_M_contigs7461.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=78bp
DKIVFNPGVVETSILLGVHEDGKAEPDEKFDLLLFEPWGGARLGAQRRTT
VTIVDAEGNGTVTHHSKTSVHHYQDEGD
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mRNA from alignment at H-canaliculatus_M_contigs7461:56..289-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7461.1.1 ID=mRNA_H-canaliculatus_M_contigs7461.1.1|Name=mRNA_H-canaliculatus_M_contigs7461.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7461:56..289- (Hapterophycus canaliculatus Oshoro7m male)
GATAAAATCGTCTTCAATCCGGGGGTGGTAGAGACATCGATCCTGCTAGG
CGTGCACGAAGACGGGAAGGCTGAACCCGACGAAAAATTCGACCTTTTGC
TGTTCGAGCCCTGGGGCGGGGCACGGCTGGGGGCGCAGAGGCGCACTACG
GTGACGATAGTCGACGCCGAGGGTAATGGAACGGTGACCCACCACTCCAA
GACCTCCGTGCATCACTATCAGGACGAGGGCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7461:56..289-

>mRNA_H-canaliculatus_M_contigs7461.1.1 ID=mRNA_H-canaliculatus_M_contigs7461.1.1|Name=mRNA_H-canaliculatus_M_contigs7461.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7461:56..289- (Hapterophycus canaliculatus Oshoro7m male)
GATAAAATCGTCTTCAATCCGGGGGTGGTAGAGACATCGATCCTGCTAGG
CGTGCACGAAGACGGGAAGGCTGAACCCGACGAAAAATTCGACCTTTTGC
TGTTCGAGCCCTGGGGCGGGGCACGGCTGGGGGCGCAGAGGCGCACTACG
GTGACGATAGTCGACGCCGAGGGTAATGGAACGGTGACCCACCACTCCAA
GACCTCCGTGCATCACTATCAGGACGAGGGCGAC
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