mRNA_H-canaliculatus_M_contigs74600.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74600.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74600.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.390e-13
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALK 114
            MSAQQVAPTRMALQ YKGKLLGAKKGYELLKKKSDALK
Sbjct:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALK 38
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: ATP (synthase subunit D-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.150e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALK 114
            MSAQ VAPTRMAL  YKGKL+GAKKGYELLKKKSDALK
Sbjct:    1 MSAQ-VAPTRMALTLYKGKLVGAKKGYELLKKKSDALK 37
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: H-or (Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0N597_PHYIT)

HSP 1 Score: 58.9 bits (141), Expect = 3.320e-9
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MS+ QVAPTRMAL T+KGK +GAKKG+ELLKKK+DALK+
Sbjct:    1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKM 39
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KAC6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-9
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MS+ QVAPTRMAL T+KGK +GAKKG+ELLKKK+DALK+
Sbjct:    1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKM 39
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JEP7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-9
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MS+ QVAPTRMAL T+KGK +GAKKG+ELLKKK+DALK+
Sbjct:    1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKM 39
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y726_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.820e-9
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   13 QVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            QVAPTRMAL TYKGKL+ AKKG+ELLKKK+DALK+
Sbjct:    4 QVAPTRMALTTYKGKLVAAKKGFELLKKKADALKI 38
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJK3_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-8
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MSA QVAPTRMAL T+KGK + AKKG+ELLKKK+DALK+
Sbjct:    1 MSAIQVAPTRMALTTFKGKRVAAKKGFELLKKKADALKM 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: H-or (na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP31_PLAHL)

HSP 1 Score: 57.0 bits (136), Expect = 1.860e-8
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MSAQ VAPTRMAL TY+GK +GAKKG+ELLKKK+DALK+
Sbjct:    1 MSAQ-VAPTRMALTTYRGKRVGAKKGFELLKKKADALKM 38
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Vacuolar (ATP synthase subunit D n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFM4_BLAHN)

HSP 1 Score: 56.6 bits (135), Expect = 2.190e-8
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MS Q+  PTRM LQTYK KL+ AKKGYELLKKKSDAL V
Sbjct:    1 MSEQKALPTRMVLQTYKQKLVSAKKGYELLKKKSDALTV 39
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BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLV9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.660e-8
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV 117
            MS   VAPTRMAL  YK K +GAKKGYELLKKKSDALKV
Sbjct:    1 MSGAIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKV 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74600.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.390e-1397.37protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6... [more]
ATP8.150e-1089.47synthase subunit D-domain-containing protein n=1 T... [more]
H-or3.320e-976.92Na-translocating F-type, V-type and A-type ATPase ... [more]
Uncharacterized4.650e-976.92protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized4.650e-976.92protein n=1 Tax=Phytophthora aleatoria TaxID=24960... [more]
Uncharacterized6.820e-982.86protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.310e-876.92protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
H-or1.860e-879.49na-translocating f-v-type and a-type atpase (F-atp... [more]
Vacuolar2.190e-876.92ATP synthase subunit D n=1 Tax=Blastocystis sp. su... [more]
Uncharacterized2.660e-879.49protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74600contigH-canaliculatus_M_contigs74600:357..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLL6
Preferred nameVMA8
PFAMsATP-synt_D
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K02149
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
Exons1
Evalue3.92e-14
EggNOG OGsCOG1394@1|root,KOG1647@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size117
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.7539294-CDS-H-canaliculatus_M_contigs74600:356..4731696854083.7539294-CDS-H-canaliculatus_M_contigs74600:356..473Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74600 357..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74600.1.1prot_H-canaliculatus_M_contigs74600.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74600 357..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74600.1.1

>prot_H-canaliculatus_M_contigs74600.1.1 ID=prot_H-canaliculatus_M_contigs74600.1.1|Name=mRNA_H-canaliculatus_M_contigs74600.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=39bp
MSAQQVAPTRMALQTYKGKLLGAKKGYELLKKKSDALKV
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mRNA from alignment at H-canaliculatus_M_contigs74600:357..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74600.1.1 ID=mRNA_H-canaliculatus_M_contigs74600.1.1|Name=mRNA_H-canaliculatus_M_contigs74600.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74600:357..473- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCTGCGCAACAGGTAGCGCCGACGCGCATGGCGCTCCAGACATACAA
GGGAAAGCTTCTCGGAGCGAAGAAAGGGTACGAGCTTCTCAAGAAGAAGT
CCGACGCGCTCAAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74600:357..473-

>mRNA_H-canaliculatus_M_contigs74600.1.1 ID=mRNA_H-canaliculatus_M_contigs74600.1.1|Name=mRNA_H-canaliculatus_M_contigs74600.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74600:357..473- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCTGCGCAACAGGTAGCGCCGACGCGCATGGCGCTCCAGACATACAA
GGGAAAGCTTCTCGGAGCGAAGAAAGGGTACGAGCTTCTCAAGAAGAAGT
CCGACGCGCTCAAGGTA
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