mRNA_H-canaliculatus_M_contigs7460.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7460.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7460.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7460.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 4.730e-130
Identity = 267/449 (59.47%), Postives = 300/449 (66.82%), Query Frame = 1 
Query:    1 ASHPAEARAGEEPADVLVDLREVLRPGCAAELSLRVCSTGEAAXXXXXXXXXXXXXXARAASFTPRPCVLKAELQAWHSREPEGDDGRASSGGDDGDAGVECRTNTRATIAPRLPFEARVTVTPRRGGVVFAQASLVCTSPVALSLRSCELCRLEPGAEVLSDPNGFLDGEVLPPGQPLRLAACLRLPSAATAXXXXXXXXXXALSVGNGKPTRS---GDAPLAVHRLRYSIDAAPGEGSVGSGGDGSAVAEVFVHDVCIPSPSVGKGNA---------SPGGSRAPAGSARTQRSLTTTVRPCGGRGGGPGAGGEEDGVLQLRLAEAREFEFGV----ASGDGSEGDGGEAGQSATYQVVAPPSDWMFSGLVRGTAKLELKVRGGKQVLSRVHLVPIRSGLLALPRLDVTLDRGSASQGDVKVWSSHLRKVLVLPPGETASVCQARAP 1299
            A  PA +R GEE  D+LV L EVLRPG  AE+SLRV ST EA+                  +  PR  V++AEL+AWHSR P   D  A+      DAGVECRT  RA I PRLPFEARV VT R+ GVVFAQ +LVCT+PVALSLRSCEL RLEPGAEVLSDPNGFL+GE LPPGQPLRLAACLR PSAAT XXXXXXXXXX  S G G+  +    G  PLAVHRLRYSI    GE      GD     E+FV DVCIPSP+ G             SPG     AGS R QR LTT VRPC   G   G GG    V +L+LAE R FEFGV    ASG G +G GG A  + TYQVVA PSDWM  GL+RG+AKL+ K  GG QVL RVHLVPIR GL+ LPRLDV ++RG A+ G+V+VW+  LRKVLVLPPG++ASVCQARAP
Sbjct: 1438 AEGPALSRPGEEATDMLVALEEVLRPGYVAEVSLRVRSTAEASPPAGGGP---------GPAVAPRSHVVRAELEAWHSRSP---DAAAAD-----DAGVECRTYARAAIVPRLPFEARVAVTARQAGVVFAQTALVCTAPVALSLRSCELSRLEPGAEVLSDPNGFLNGESLPPGQPLRLAACLRRPSAATXXXXXXXXXXXXXSRGGGEERKGSVGGGVPLAVHRLRYSIGTVAGES-----GDSGQAEEIFVFDVCIPSPADGXXXXXXXXXXXXXSPGA----AGSGRAQRCLTTAVRPCDDGGAEDGKGG----VTRLKLAEPRAFEFGVVDSEASGGGEDGTGGTAPPTVTYQVVASPSDWMVGGLIRGSAKLDKK-GGGLQVLCRVHLVPIRGGLVELPRLDVVVERGRAAPGEVEVWNPDLRKVLVLPPGDSASVCQARAP 1855
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7460.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.730e-13059.47protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7460contigH-canaliculatus_M_contigs7460:8..2838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LAZ1
PFAMsFoie-gras_1
Model size1302
Max annot lvl2759|Eukaryota
KEGG koko:K20307,ko:K20476
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.75e-131
EggNOG OGsKOG1931@1|root,KOG1931@2759|Eukaryota
Descriptionearly endosome to Golgi transport
Cds size1302
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.6946073-CDS-H-canaliculatus_M_contigs7460:7..11111696854083.6946073-CDS-H-canaliculatus_M_contigs7460:7..1111Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7460 8..1111 +
1696854083.7078776-CDS-H-canaliculatus_M_contigs7460:1676..17911696854083.7078776-CDS-H-canaliculatus_M_contigs7460:1676..1791Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7460 1677..1791 +
1696854083.718732-CDS-H-canaliculatus_M_contigs7460:2755..28381696854083.718732-CDS-H-canaliculatus_M_contigs7460:2755..2838Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7460 2756..2838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7460.1.1prot_H-canaliculatus_M_contigs7460.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7460 8..2838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7460.1.1

>prot_H-canaliculatus_M_contigs7460.1.1 ID=prot_H-canaliculatus_M_contigs7460.1.1|Name=mRNA_H-canaliculatus_M_contigs7460.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=434bp
ASHPAEARAGEEPADVLVDLREVLRPGCAAELSLRVCSTGEAAAAAAAAA
AAAAAGGARAASFTPRPCVLKAELQAWHSREPEGDDGRASSGGDDGDAGV
ECRTNTRATIAPRLPFEARVTVTPRRGGVVFAQASLVCTSPVALSLRSCE
LCRLEPGAEVLSDPNGFLDGEVLPPGQPLRLAACLRLPSAATAAATAASA
ALAALSVGNGKPTRSGDAPLAVHRLRYSIDAAPGEGSVGSGGDGSAVAEV
FVHDVCIPSPSVGKGNASPGGSRAPAGSARTQRSLTTTVRPCGGRGGGPG
AGGEEDGVLQLRLAEAREFEFGVASGDGSEGDGGEAGQSATYQVVAPPSD
WMFSGLVRGTAKLELKVRGGKQVLSRVHLVPIRSGLLALPRLDVTLDRGS
ASQGDVKVWSSHLRKVLVLPPGETASVCQARAP*
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mRNA from alignment at H-canaliculatus_M_contigs7460:8..2838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7460.1.1 ID=mRNA_H-canaliculatus_M_contigs7460.1.1|Name=mRNA_H-canaliculatus_M_contigs7460.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2831bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7460:8..2838+ (Hapterophycus canaliculatus Oshoro7m male)
GCCTCGCACCCGGCGGAAGCTCGGGCAGGGGAAGAGCCGGCGGACGTGCT
CGTGGACCTCCGAGAGGTGTTGCGACCGGGGTGCGCGGCGGAGTTGTCTC
TGCGCGTCTGCTCGACCGGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCCGCCGGCGGAGCCCGCGCGGCGTCCTTCACCCCGCGGCC
CTGCGTCCTGAAGGCCGAGCTCCAGGCCTGGCATTCTCGAGAACCCGAGG
GGGATGACGGTCGCGCCAGCAGCGGCGGCGACGACGGCGACGCTGGTGTC
GAGTGCCGAACCAACACCCGAGCGACGATCGCCCCGAGGCTTCCTTTCGA
GGCTCGGGTGACGGTGACGCCCCGCCGGGGGGGCGTGGTGTTCGCCCAGG
CGTCGCTCGTCTGCACCTCGCCCGTGGCGCTCTCGCTGCGCTCCTGCGAG
CTCTGCCGGCTGGAGCCCGGCGCCGAGGTCCTCTCGGACCCGAACGGTTT
CCTGGACGGGGAGGTCCTGCCCCCGGGACAGCCGCTGCGGCTCGCGGCGT
GCTTGCGGCTACCGTCCGCGGCGACGGCGGCGGCCACCGCGGCATCCGCC
GCGCTGGCGGCCCTGAGCGTCGGGAACGGCAAGCCGACGAGGAGCGGAGA
CGCGCCGCTCGCCGTCCACCGGCTCCGTTACTCGATCGACGCCGCTCCTG
GCGAAGGCAGCGTCGGAAGCGGCGGGGACGGTAGCGCGGTCGCCGAGGTG
TTCGTGCACGACGTGTGCATCCCAAGCCCCTCCGTCGGCAAGGGGAACGC
CTCCCCCGGCGGCTCGCGGGCGCCCGCGGGCTCCGCGCGGACGCAGCGTA
GCCTCACGACCACGGTCCGGCCGTGCGGCGGGCGCGGCGGCGGGCCTGGT
GCCGGTGGGGAGGAGGACGGCGTGCTCCAGCTCAGGCTTGCCGAGGCGAG
AGAGTTCGAGTTCGGCGTCGCCAGTGGTGACGGTTCGGAGGGCGACGGGG
GGGAAGCGGGGCAATCGGCCACGTATCAGGTGGTTGCGCCGCCGTCGGAC
TGGATGTTCAGCGGCCTGGTCAGGGGCACGGCGAAGCTGGAGCTGAAGGT
GCGTGTGTGTGCGAGTGTGTGTGTGTGTGCATGGGTGTCAACAACTTCGA
CCGCGCGGAGGGGCTGAAGCTCAAAACGAAGACGTCAGTCTCGTCGGTGG
AGGAATTTATGATGGAGATAGACGGGACGGTGGGGTCCAGCCCGTAGATT
GTGCGCGTGCATTTGCGCGGAGAGTCGTGATCAAGGACGGCTGATCCCTG
TTCAGCCCCGTTTCACGGTTCCTGATTCAGCGCCCAAGCAGCGAAGTGGA
GGGAGCAACGCACACCAGCAGAGTGCGGCCTGACCACCGCTGTACAATCC
GAATCGGTTCTATGTAACCACTTTATCTCGTTACCGATCTCCGTCCGGCA
CCTCCTCGCCTGGGACAGCCTCCGGGGCCGACCGAAGTAGACGCTTCAGT
TTAGGGTTGAGCGTTTCATCCCTCGTCCCCAAGCCTTCTATCCTCAGATC
GCTGGCATATTTCCAACGTTGCGCGATGCAGGCGTGGTTGGCAAACAGGC
GATTTGTCCCTTCGTCCGCCCCCGCCGCGTCCGTTGCTGCTGTACCACCG
GGGGTTGTTCTCGCTTCAGGGCGGCAAGCAAGTGCTCTCTCGGGTTCACC
TTGTGCCTATTCGGAGCGGATTGCTGGCGCTCCCTCGCCTGGACGTGACG
CTGGACAGAGGCAGCGCCAGCCAAGGGGATGTGAGTTAGTTTTGTCGTCC
GTGTCGCCATTGTCGCCGTAGCAGTCGGTGTTGTTGCTGCTGCTGCTGCT
GCTGCTGCTGTTATTGTTGTTGTTGTTGTTGTTGTTGGTTGTGGTGGTGG
TGGTGGTGGTGGTGGTGGTGTCGGGGGTTGTGGTTCTTCATGCGCTACGC
TCTTCCGTTGACGCCTATTGCGTGCGTCGGCCTTTCGAGGAAATTGCCGT
GCTCGGATATCTACTCCGCGAGGGATTCAGGTCCCACTGCCGTGCGTTCT
GAAGGTCTAGTCTCGGAGCTGTGTCTCGTGCGCTGGGATGTATGCATCGT
CTCTGTCGTAGTGGGACTACGAACATCTACTTTACATGAGCGGTGTACGT
GAAAGGAGTTGAGGAGTGCCCTCGATGAGGCGGATTTCGTTCCTAGTCTC
ATACCTTCCTCTCCCGAATGAATGCGGTTCCGAGCTTGACGCCCATCTAC
CCCCACGACTTGATTTCGCCAGCAGAGAGAAGAGTAGATCGCTTCGTCAG
GTTTCCAGCGTAGTCGCACGATGCCGGAAAGGTAGAGGCTGTTTCAGTCT
AGAAAGCACCTCCGTGTTAGAACATGTGGGCTCCTTGTAAGCAAGTTTTG
TCCGGTCCAAGCCGTTTGCCTGTTCCAACGTTGCGTCCCCGTCGAAAAGC
CATGTTTATTTTTGAAGACCTCGGAGCTTTCGGTCGTTTCGGTCGTCAAC
ACAAGTGATGCCGCATTTCTACTGTAGACTGGAAAACCTGCTTTGTCGAA
AAACGAAAAAATACAACGGGCAAACGAGTCTAAAATGAGATGGATGCATT
GCGGCAATAGTGGACTTGACTCTCTTTAGCACCTTCTCGAGAGTACTGTA
ACTGATGCCAAAGTCGCCACTCCCCTGCATTCACCGACCCCTTTTTTTCT
TTTACACAATCTCTCTTCGCGCTGCTTTCGCTCGCGGACAGGTGGTAGAG
GTGTGGAGTTCGCACCTGCGCAAGGTGCTGGTGCTGCCGCCTGGGGAGAC
CGCTTCCGTGTGCCAAGCGCGCGCTCCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7460:8..2838+

>mRNA_H-canaliculatus_M_contigs7460.1.1 ID=mRNA_H-canaliculatus_M_contigs7460.1.1|Name=mRNA_H-canaliculatus_M_contigs7460.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7460:8..2838+ (Hapterophycus canaliculatus Oshoro7m male)
GCCTCGCACCCGGCGGAAGCTCGGGCAGGGGAAGAGCCGGCGGACGTGCT
CGTGGACCTCCGAGAGGTGTTGCGACCGGGGTGCGCGGCGGAGTTGTCTC
TGCGCGTCTGCTCGACCGGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCCGCCGGCGGAGCCCGCGCGGCGTCCTTCACCCCGCGGCC
CTGCGTCCTGAAGGCCGAGCTCCAGGCCTGGCATTCTCGAGAACCCGAGG
GGGATGACGGTCGCGCCAGCAGCGGCGGCGACGACGGCGACGCTGGTGTC
GAGTGCCGAACCAACACCCGAGCGACGATCGCCCCGAGGCTTCCTTTCGA
GGCTCGGGTGACGGTGACGCCCCGCCGGGGGGGCGTGGTGTTCGCCCAGG
CGTCGCTCGTCTGCACCTCGCCCGTGGCGCTCTCGCTGCGCTCCTGCGAG
CTCTGCCGGCTGGAGCCCGGCGCCGAGGTCCTCTCGGACCCGAACGGTTT
CCTGGACGGGGAGGTCCTGCCCCCGGGACAGCCGCTGCGGCTCGCGGCGT
GCTTGCGGCTACCGTCCGCGGCGACGGCGGCGGCCACCGCGGCATCCGCC
GCGCTGGCGGCCCTGAGCGTCGGGAACGGCAAGCCGACGAGGAGCGGAGA
CGCGCCGCTCGCCGTCCACCGGCTCCGTTACTCGATCGACGCCGCTCCTG
GCGAAGGCAGCGTCGGAAGCGGCGGGGACGGTAGCGCGGTCGCCGAGGTG
TTCGTGCACGACGTGTGCATCCCAAGCCCCTCCGTCGGCAAGGGGAACGC
CTCCCCCGGCGGCTCGCGGGCGCCCGCGGGCTCCGCGCGGACGCAGCGTA
GCCTCACGACCACGGTCCGGCCGTGCGGCGGGCGCGGCGGCGGGCCTGGT
GCCGGTGGGGAGGAGGACGGCGTGCTCCAGCTCAGGCTTGCCGAGGCGAG
AGAGTTCGAGTTCGGCGTCGCCAGTGGTGACGGTTCGGAGGGCGACGGGG
GGGAAGCGGGGCAATCGGCCACGTATCAGGTGGTTGCGCCGCCGTCGGAC
TGGATGTTCAGCGGCCTGGTCAGGGGCACGGCGAAGCTGGAGCTGAAGGT
GCGTGGCGGCAAGCAAGTGCTCTCTCGGGTTCACCTTGTGCCTATTCGGA
GCGGATTGCTGGCGCTCCCTCGCCTGGACGTGACGCTGGACAGAGGCAGC
GCCAGCCAAGGGGATGTGAAGGTGTGGAGTTCGCACCTGCGCAAGGTGCT
GGTGCTGCCGCCTGGGGAGACCGCTTCCGTGTGCCAAGCGCGCGCTCCGT
GA
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