mRNA_H-canaliculatus_M_contigs746.5.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs746.5.1
Unique NamemRNA_H-canaliculatus_M_contigs746.5.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: L51_S25_CI-B8 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G779_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.680e-59
Identity = 87/96 (90.62%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKVR 288
            MATRGVFQLRKLTLKYCDHSGSSKGAREFIRH+IV+FAN+TPAAEV TELRPG+HPY++GDYVTGEVKTIGIKNI PGEIMDYA+MLRNSSGHKVR
Sbjct:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHRIVEFANNTPAAEVVTELRPGKHPYIMGDYVTGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVR 96
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: Probable (54S ribosomal protein L51, mitochondrial n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RFE5_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 9.420e-27
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSG 276
            MA  GV+QLRKLTL +C  SGSS+GAR F+   +  F    P  ++  ELRPGQHPYL  +Y  G V+T+G+KN  P E++ +A+MLR+++G
Sbjct:    1 MARLGVWQLRKLTLNFCSFSGSSRGARAFVEDFLPTFKQENPHLQIIEELRPGQHPYLKAEYRNGRVRTVGVKNELPNEVLRHAVMLRSAAG 92
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: Thioredoxin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.420e-25
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKVR 288
            MATRGV QL+++ ++YCD  GSS+G R+FI  ++V FA + P  E+ TE+R  +HP +  DY+TG  KT+G+KN  P  I D+   LR ++G K R
Sbjct:    1 MATRGVMQLQRIHIRYCDWGGSSQGMRDFIGRELVAFAKAVPHCEIITEVRRNRHPIIRADYLTGIPKTLGVKNEAPSAIRDFLHRLRTTTGRKQR 96
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: Predicted (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S2L6_PHYPA)

HSP 1 Score: 99.0 bits (245), Expect = 8.720e-25
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKV 285
            MA RGV+QL+KL + +CDHSGSS GAREF+         + P  EVAT+L PGQHPYL G Y+    + + +KN    EI+  A+ LRNS+G KV
Sbjct:    1 MAVRGVWQLQKLIVCFCDHSGSSAGAREFVARIFPTLQKNNPQFEVATQLVPGQHPYLRGLYLNKNDRVVDVKNKNAEEILTQAMRLRNSTGRKV 95
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: L51_S25_CI-B8 (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX17_COCSC)

HSP 1 Score: 99.4 bits (246), Expect = 8.830e-25
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSG 276
            MA  GV+QLRKLTL YC+ SGSS+GAR F+   +  F    P  +V  +L+PG+HPYL  +Y  G V+T+G+KN  P  ++ +A+MLR+++G
Sbjct:    1 MARLGVWQLRKLTLNYCNISGSSRGARTFVEDYLPTFKQENPHLQVLEDLQPGRHPYLKAEYRNGRVRTVGVKNELPDGVLRHAVMLRSAAG 92
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: Uncharacterized (protein AlNc14C277G10065 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUQ8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.530e-24
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQ-IVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKV 285
            MATRG++QL++LT++YC HSGSS+  R+F+ ++  +DF    P     TEL+PG+HP L+GDYVT E K   +KN     IM     LR+SSG K+
Sbjct:    1 MATRGIWQLKELTIRYCQHSGSSRYIRDFLNNKKFIDFVKENPQVAFRTELKPGRHPVLIGDYVTNEQKVCDVKNKEEKWIMLQLQRLRDSSGRKM 96
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: L51_S25_CI-B8 (domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VTC2_MARPO)

HSP 1 Score: 96.3 bits (238), Expect = 1.010e-23
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKV 285
            MA RGV+QL+KL L +CDHSGSS+GAREF+   +  F    P  EV TEL  G+HP+L G +     + + +KN+   E+   A+ LRNS+G KV
Sbjct:    1 MAVRGVWQLKKLVLYFCDHSGSSRGAREFVESILPKFKLENPQLEVLTELHRGRHPHLKGHFANKNERVVDVKNLDSQEVALQAMRLRNSTGRKV 95
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: 54S (ribosomal protein L51, mitochondrial n=3 Tax=Magnoliopsida TaxID=3398 RepID=A0A1S3BXU0_CUCME)

HSP 1 Score: 95.5 bits (236), Expect = 2.020e-23
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKV 285
            MA RGV+QL+KL + YCD  GSS+G R F+  Q+  F    P  EV TEL  GQHPYL G Y +   + + +KN+ P EI   A  LRNS G KV
Sbjct:    1 MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELNRGQHPYLKGFYKSNNNRVVCVKNMDPEEIHSCATRLRNSLGRKV 95
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: L51_S25_CI-B8 (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7B8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.590e-23
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRH-QIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKV 285
            MATRG++QL+++T++YC HSGSS+  R+F+ + Q ++F    P     TEL+PG+HP L+GDYVT + K   +KN     IM     LR+SSG K+
Sbjct:    1 MATRGIWQLKEVTIRYCQHSGSSRHVRDFLSNKQFLEFVKENPQVSFRTELKPGRHPVLIGDYVTNQQKVCDVKNKEQKVIMLQLQRLRDSSGRKM 96
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BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHV6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.810e-23
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:    1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATELRPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHK 282
            M+ RGV QL++L ++Y D+ GSSKG RE++R  +V+FA + P   V TEL+   HPY+ G+Y+ G  KTI IKN+ P +I  Y   LRN  G K
Sbjct:    1 MSLRGVRQLKELVIRYSDYDGSSKGIREWMRTNLVNFAQTNPELAVTTELKRCVHPYVRGNYINGNTKTICIKNLEPEKITSYVNDLRNQIGRK 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs746.5.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L51_S25_CI-B81.680e-5990.63domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Probable9.420e-2750.0054S ribosomal protein L51, mitochondrial n=1 Tax=C... [more]
Thioredoxin-like1.420e-2546.88protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Predicted8.720e-2550.53protein n=1 Tax=Physcomitrium patens TaxID=3218 Re... [more]
L51_S25_CI-B88.830e-2547.83domain-containing protein n=1 Tax=Coccomyxa subell... [more]
Uncharacterized4.530e-2447.92protein AlNc14C277G10065 n=1 Tax=Albugo laibachii ... [more]
L51_S25_CI-B81.010e-2347.37domain-containing protein n=2 Tax=Marchantia polym... [more]
54S2.020e-2349.47ribosomal protein L51, mitochondrial n=3 Tax=Magno... [more]
L51_S25_CI-B82.590e-2345.83domain-containing protein n=1 Tax=Albugo candida T... [more]
Hypothetical2.810e-2347.87protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs746contigH-canaliculatus_M_contigs746:11362..11652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G779
Preferred nameMRPL43
PFAMsL51_S25_CI-B8
Model size291
Max annot lvl2759|Eukaryota
KEGG koko:K17424
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue2.75e-60
EggNOG OGsKOG3445@1|root,KOG3445@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size291
COG categoryF
BRITEbr01610,ko00000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.6601999-CDS-H-canaliculatus_M_contigs746:11361..116521696854083.6601999-CDS-H-canaliculatus_M_contigs746:11361..11652Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs746 11362..11652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs746.5.1prot_H-canaliculatus_M_contigs746.5.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs746 11362..11652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs746.5.1

>prot_H-canaliculatus_M_contigs746.5.1 ID=prot_H-canaliculatus_M_contigs746.5.1|Name=mRNA_H-canaliculatus_M_contigs746.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=97bp
MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHQIVDFANSTPAAEVATEL
RPGQHPYLLGDYVTGEVKTIGIKNITPGEIMDYALMLRNSSGHKVR*
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mRNA from alignment at H-canaliculatus_M_contigs746:11362..11652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs746.5.1 ID=mRNA_H-canaliculatus_M_contigs746.5.1|Name=mRNA_H-canaliculatus_M_contigs746.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=291bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs746:11362..11652+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCACGCGAGGGGTTTTTCAGCTCCGTAAGCTCACGTTGAAATATTG
CGACCACAGTGGTAGCAGTAAAGGTGCACGGGAATTCATCCGGCACCAGA
TCGTGGACTTCGCGAACAGCACGCCTGCGGCTGAGGTCGCTACCGAGCTG
AGACCAGGGCAGCACCCTTACCTTCTCGGGGATTATGTGACAGGAGAGGT
CAAGACGATAGGCATTAAGAATATCACACCAGGAGAGATCATGGACTACG
CGTTAATGCTCAGAAACTCCAGTGGTCACAAGGTGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs746:11362..11652+

>mRNA_H-canaliculatus_M_contigs746.5.1 ID=mRNA_H-canaliculatus_M_contigs746.5.1|Name=mRNA_H-canaliculatus_M_contigs746.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=291bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs746:11362..11652+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCACGCGAGGGGTTTTTCAGCTCCGTAAGCTCACGTTGAAATATTG
CGACCACAGTGGTAGCAGTAAAGGTGCACGGGAATTCATCCGGCACCAGA
TCGTGGACTTCGCGAACAGCACGCCTGCGGCTGAGGTCGCTACCGAGCTG
AGACCAGGGCAGCACCCTTACCTTCTCGGGGATTATGTGACAGGAGAGGT
CAAGACGATAGGCATTAAGAATATCACACCAGGAGAGATCATGGACTACG
CGTTAATGCTCAGAAACTCCAGTGGTCACAAGGTGAGGTGA
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