mRNA_H-canaliculatus_M_contigs74595.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74595.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74595.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74595.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.010e-30
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 SVTQTYEVTLQRPPGLILEQLWDPAG--QAESVIVAGIVPGSPAEASGVVECGDKVVAVSSSIGNIMWP 201
            SVTQTYEVTLQRPPGLILEQ+WDPAG  QA+SV+VAGIVPGSPAE+SG VECGD VVAVSSSIGNIMWP
Sbjct:  383 SVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDTVVAVSSSIGNIMWP 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74595.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.010e-3088.41protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74595contigH-canaliculatus_M_contigs74595:343..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTM8
PFAMsPPR,PPR_2
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.66e-31
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size201
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.3106868-CDS-H-canaliculatus_M_contigs74595:342..5431696854083.3106868-CDS-H-canaliculatus_M_contigs74595:342..543Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74595 343..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74595.1.1prot_H-canaliculatus_M_contigs74595.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74595 343..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74595.1.1

>prot_H-canaliculatus_M_contigs74595.1.1 ID=prot_H-canaliculatus_M_contigs74595.1.1|Name=mRNA_H-canaliculatus_M_contigs74595.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
SVTQTYEVTLQRPPGLILEQLWDPAGQAESVIVAGIVPGSPAEASGVVEC
GDKVVAVSSSIGNIMWP
back to top

mRNA from alignment at H-canaliculatus_M_contigs74595:343..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74595.1.1 ID=mRNA_H-canaliculatus_M_contigs74595.1.1|Name=mRNA_H-canaliculatus_M_contigs74595.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74595:343..543- (Hapterophycus canaliculatus Oshoro7m male)
TCCGTCACTCAGACCTACGAGGTAACCCTCCAGAGGCCCCCGGGTCTCAT
CCTGGAGCAACTTTGGGACCCTGCCGGACAGGCCGAGAGCGTTATCGTGG
CGGGGATAGTTCCCGGCAGCCCGGCGGAAGCTAGCGGCGTCGTCGAGTGC
GGCGACAAGGTGGTGGCCGTGAGCAGCTCCATCGGAAACATCATGTGGCC
G
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74595:343..543-

>mRNA_H-canaliculatus_M_contigs74595.1.1 ID=mRNA_H-canaliculatus_M_contigs74595.1.1|Name=mRNA_H-canaliculatus_M_contigs74595.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74595:343..543- (Hapterophycus canaliculatus Oshoro7m male)
TCCGTCACTCAGACCTACGAGGTAACCCTCCAGAGGCCCCCGGGTCTCAT
CCTGGAGCAACTTTGGGACCCTGCCGGACAGGCCGAGAGCGTTATCGTGG
CGGGGATAGTTCCCGGCAGCCCGGCGGAAGCTAGCGGCGTCGTCGAGTGC
GGCGACAAGGTGGTGGCCGTGAGCAGCTCCATCGGAAACATCATGTGGCC
G
back to top