mRNA_H-canaliculatus_M_contigs7458.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7458.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7458.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: KAP (NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.180e-17
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   10 FTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            F L V ID+LDRCP   I+ +L+A+HLLLE+    + V LA+DPR+++SAIE  L   P+  +  EV+G  YLDKIIH+PFC+P
Sbjct:  431 FALVVSIDNLDRCPHRNIVKVLEAVHLLLERDQTNVVVILALDPRVIISAIEADLG--PE--VRKEVSGSEYLDKIIHVPFCVP 510          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: KAP (NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU44_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.340e-16
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   73 LQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            L+A HLLL+Q +A M VFLAVDPRI+VSAI+  L+ VPDEV     NGL YL+KIIHIPFC+P
Sbjct:  130 LRATHLLLQQPEAQMVVFLAVDPRIIVSAIDKKLEDVPDEV-----NGLVYLEKIIHIPFCLP 187          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F086_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 9.780e-15
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   16 LAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            L + IDDLDRC ++K + +LQ+M LL E    P  +FLA+DPRI+V+AIETS  G   +   + VNG  YLDKI+ IPF IP
Sbjct:   41 LVIFIDDLDRCDAEKALEVLQSMVLLTE--GTPFIIFLAIDPRIVVAAIETSSNGFFGQ---AGVNGHEYLDKIVQIPFVIP 117          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: NKPD1 (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZJ76_BRALA)

HSP 1 Score: 77.0 bits (188), Expect = 1.550e-14
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   10 FTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            + + +V+DDLDRCP+D++  +++A+ +LL  +D+P    LAVDPRI+V +IE S   +  +    ++NG  YL KI+ +P C+P
Sbjct:  834 YRVVIVVDDLDRCPTDRVTKVIEAVSILLSDRDSPFISILAVDPRIVVKSIEASYGDMMKD---GDINGYEYLKKIVQLPICLP 914          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: KAP (NTPase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.770e-14
Identity = 44/105 (41.90%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   16 LAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKG-----------------------VPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            + + IDDLDRC   KI+ ML+A+HLLL+   AP+  FLA+DPRI+++AIE +L                         +P +    E   L YLDKIIH+PFCIP
Sbjct:    1 MVITIDDLDRCSKPKIVNMLEAVHLLLQIPSAPIIAFLAIDPRIVIAAIEDTLGDRITLQATKQAKPPPACAVAASLTLPTDKTLKEC--LEYLDKIIHLPFCIP 103          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: KIDINS220 (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EZG5_BRALA)

HSP 1 Score: 75.1 bits (183), Expect = 7.320e-14
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 GRGFTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            GR +   VV+DDLDRCP D++  +++A+ +LL   ++     LAVDPRI+V +IE S   V   +L + +NG  YL KI+ +P C+P
Sbjct:  805 GRQYRAVVVVDDLDRCPKDRVTKVIEAVGILLSDPNSYFISLLAVDPRIVVKSIEESFGDV---MLNANINGYEYLKKIVQLPICLP 888          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: KAP (NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K326_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-13
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   10 FTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            F L V ID+LDRCP D I+ +LQA+H LLE+  A   + LA+D R++++AI   +    D+++   V+G  YL+KII++PF IP
Sbjct:  233 FALVVSIDNLDRCPHDDIVQVLQAVHFLLEKPGANFILILALDSRVVIAAIGAGM----DDLVRQRVSGSEYLEKIIYVPFFIP 312          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: KAP (NTPase domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YLT8_CIOSA)

HSP 1 Score: 71.2 bits (173), Expect = 4.120e-13
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    4 RGFTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            + + + + IDDLDRCP +K+  +L+A+++LL  + +P    +A+D R+ V  IE  +      +L + VNG  YL KII++PFC+P
Sbjct:   67 KNYKIIISIDDLDRCPHEKVKSVLEAVNILLSDRSSPFVCLIALDSRVAVKCIEEDMGAA---LLKANVNGHEYLKKIINLPFCLP 149          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: uncharacterized (protein LOC109468822 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YZH6_BRABE)

HSP 1 Score: 72.4 bits (176), Expect = 6.440e-13
Identity = 33/87 (37.93%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 GRGFTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            G  + + +V+DDLD CP D+++ +LQAM++LL  Q+A     +A+DP+I+V+ +E+ L     E + +  +G  YL +I+H+P C+P
Sbjct:  659 GVQYRVIIVVDDLDCCPGDRVVDVLQAMNILLSDQEANFVSIVAMDPKIVVNCLESHLT----ETIINNYSGYEYLKRIVHVPVCLP 741          
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Match: Uncharacterized (protein LOC100178218 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DG35_9ASCI)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-12
Identity = 34/86 (39.53%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    4 RGFTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRILVSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP 261
            + + + + IDDLDRCP +K+  +L+A+ +LL  + +P    +A+D R+ V  IE   +G+ + +L + VNG  YL KII++PFC+P
Sbjct:  575 QNYKIIISIDDLDRCPHEKVKSVLEAVSILLSDRCSPFVCLIALDSRVAVKCIE---EGMGNALLKANVNGHEYLKKIINLPFCLP 657          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7458.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
KAP2.180e-1752.38NTPase domain-containing protein n=1 Tax=Ectocarpu... [more]
KAP4.340e-1666.67NTPase domain-containing protein n=1 Tax=Ectocarpu... [more]
Hypothetical9.780e-1552.44protein (Fragment) n=1 Tax=Haptolina ericina TaxID... [more]
NKPD11.550e-1440.48protein n=1 Tax=Branchiostoma lanceolatum TaxID=77... [more]
KAP1.770e-1441.90NTPase domain-containing protein n=1 Tax=Tribonema... [more]
KIDINS2207.320e-1442.53protein n=1 Tax=Branchiostoma lanceolatum TaxID=77... [more]
KAP1.660e-1345.24NTPase domain-containing protein n=1 Tax=Ectocarpu... [more]
KAP4.120e-1338.37NTPase domain-containing protein n=1 Tax=Ciona sav... [more]
uncharacterized6.440e-1337.93protein LOC109468822 n=1 Tax=Branchiostoma belcher... [more]
Uncharacterized1.200e-1239.53protein LOC100178218 n=1 Tax=Phallusia mammillata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7458contigH-canaliculatus_M_contigs7458:4372..4974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002600901.1
Preferred nameNKPD1
PFAMsKAP_NTPase
Model size261
Max annot lvl33208|Metazoa
KEGG koko:K12460,ko:K18167
KEGG Pathwayko04722,map04722
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.98e-13
EggNOG OGsCOG0666@1|root,KOG0502@2759|Eukaryota,39TJH@33154|Opisthokonta,3BJ8B@33208|Metazoa,3CYAT@33213|Bilateria,4888U@7711|Chordata
DescriptionKAP family P-loop domain
Cds size261
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.2644153-CDS-H-canaliculatus_M_contigs7458:4371..44251696854083.2644153-CDS-H-canaliculatus_M_contigs7458:4371..4425Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7458 4372..4425 -
1696854083.2829921-CDS-H-canaliculatus_M_contigs7458:4767..49741696854083.2829921-CDS-H-canaliculatus_M_contigs7458:4767..4974Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7458 4768..4974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7458.1.1prot_H-canaliculatus_M_contigs7458.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7458 4372..4974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7458.1.1

>prot_H-canaliculatus_M_contigs7458.1.1 ID=prot_H-canaliculatus_M_contigs7458.1.1|Name=mRNA_H-canaliculatus_M_contigs7458.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=87bp
GRGFTLAVVIDDLDRCPSDKIMLMLQAMHLLLEQQDAPMAVFLAVDPRIL
VSAIETSLKGVPDEVLYSEVNGLHYLDKIIHIPFCIP
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mRNA from alignment at H-canaliculatus_M_contigs7458:4372..4974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7458.1.1 ID=mRNA_H-canaliculatus_M_contigs7458.1.1|Name=mRNA_H-canaliculatus_M_contigs7458.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=603bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7458:4372..4974- (Hapterophycus canaliculatus Oshoro7m male)
GGACGAGGTTTCACGCTGGCCGTCGTGATCGACGATCTGGATCGCTGCCC CAGCGACAAGATTATGCTCATGTTGCAAGCGATGCATCTTCTTCTGGAGC AGCAGGACGCACCGATGGCCGTGTTTCTCGCCGTGGACCCACGAATCCTC GTGTCCGCCATCGAAACGTCGTTGAAAGGCGTCCCCGACGAGGTACTGTA CTCGGAGGTGGCTTCCTCACTTGAGTGGCCCACGATAGACCATGCCATCA TCTCGCGGTTGGTAACGCAAGCTCGAAAACCACCAACTTCGGTCTTGTTC ATATACCCTCCAGACACACATCACCGATGACAAGCTAGGCCGGGTATCAA GGTGTTGTTGTGTGTTGCTCCTGCCGTCACAGTTGTTATTCCTGTCGTCG TTGTTGCCGCACAGTTTTCGATCCGTTCATCCAGTAGCAAAACCTTGAAG GTCGGCAAGAAATGACTTTGTCATGAAGAGTGGTAATCCATTCTTGCGTT CATCGTTGATGCACACTCTTGGTTCCTCACGCACTGTTGACATCTCCAGG TGAACGGGTTGCACTATCTGGACAAGATTATTCACATCCCATTCTGCATC CCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7458:4372..4974-

>mRNA_H-canaliculatus_M_contigs7458.1.1 ID=mRNA_H-canaliculatus_M_contigs7458.1.1|Name=mRNA_H-canaliculatus_M_contigs7458.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7458:4372..4974- (Hapterophycus canaliculatus Oshoro7m male)
GGACGAGGTTTCACGCTGGCCGTCGTGATCGACGATCTGGATCGCTGCCC
CAGCGACAAGATTATGCTCATGTTGCAAGCGATGCATCTTCTTCTGGAGC
AGCAGGACGCACCGATGGCCGTGTTTCTCGCCGTGGACCCACGAATCCTC
GTGTCCGCCATCGAAACGTCGTTGAAAGGCGTCCCCGACGAGGTACTGTA
CTCGGAGGTGAACGGGTTGCACTATCTGGACAAGATTATTCACATCCCAT
TCTGCATCCCT
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