mRNA_H-canaliculatus_M_contigs74570.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74570.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74570.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74570.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.740e-19
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   31 LQAKIDEEKAEAAAAMNEQHRLEQKRKQEEDIAVCYVCNSGNFEDTSEEHAIVFCDRCCVAVHTSCYNAEE 243
            LQ +  + KAE AA M++Q+++E KRK+EEDIAVCYVCNSG+  +  E+  IVFC+RCCVAVH SCYNAEE
Sbjct:  397 LQERERQAKAEVAARMSKQNQVELKRKKEEDIAVCYVCNSGDHVENKED--IVFCERCCVAVHMSCYNAEE 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74570.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.740e-1963.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74570contigH-canaliculatus_M_contigs74570:214..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296587.XP_002501779.1
PFAMsPHD_2,zf-HC5HC2H_2
Model size258
Max annot lvl3041|Chlorophyta
KEGG koko:K11348
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000125
EggNOG OGsCOG5141@1|root,KOG0954@2759|Eukaryota,KOG0955@2759|Eukaryota,37KHX@33090|Viridiplantae,34PCY@3041|Chlorophyta
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-09_003920.2
DescriptionPHD-finger
Cds size258
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854083.156465-CDS-H-canaliculatus_M_contigs74570:213..4711696854083.156465-CDS-H-canaliculatus_M_contigs74570:213..471Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74570 214..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74570.1.1prot_H-canaliculatus_M_contigs74570.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74570 214..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74570.1.1

>prot_H-canaliculatus_M_contigs74570.1.1 ID=prot_H-canaliculatus_M_contigs74570.1.1|Name=mRNA_H-canaliculatus_M_contigs74570.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=86bp
PPPPPPSRPQLQAKIDEEKAEAAAAMNEQHRLEQKRKQEEDIAVCYVCNS
GNFEDTSEEHAIVFCDRCCVAVHTSCYNAEEVSLR*
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mRNA from alignment at H-canaliculatus_M_contigs74570:214..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74570.1.1 ID=mRNA_H-canaliculatus_M_contigs74570.1.1|Name=mRNA_H-canaliculatus_M_contigs74570.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74570:214..471- (Hapterophycus canaliculatus Oshoro7m male)
CCCCCCCCCCCCCCCCCCTCCCGCCCCCAGCTCCAAGCGAAGATCGACGA
GGAGAAGGCGGAGGCCGCGGCCGCGATGAACGAGCAGCACCGGCTGGAGC
AGAAGCGCAAGCAGGAGGAGGACATCGCCGTGTGCTACGTGTGCAACAGC
GGAAACTTCGAAGACACGAGCGAGGAGCACGCCATCGTCTTCTGCGACCG
CTGCTGCGTCGCCGTGCACACCTCCTGCTACAACGCCGAAGAGGTGAGTC
TCCGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74570:214..471-

>mRNA_H-canaliculatus_M_contigs74570.1.1 ID=mRNA_H-canaliculatus_M_contigs74570.1.1|Name=mRNA_H-canaliculatus_M_contigs74570.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74570:214..471- (Hapterophycus canaliculatus Oshoro7m male)
CCCCCCCCCCCCCCCCCCTCCCGCCCCCAGCTCCAAGCGAAGATCGACGA
GGAGAAGGCGGAGGCCGCGGCCGCGATGAACGAGCAGCACCGGCTGGAGC
AGAAGCGCAAGCAGGAGGAGGACATCGCCGTGTGCTACGTGTGCAACAGC
GGAAACTTCGAAGACACGAGCGAGGAGCACGCCATCGTCTTCTGCGACCG
CTGCTGCGTCGCCGTGCACACCTCCTGCTACAACGCCGAAGAGGTGAGTC
TCCGCTAG
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