mRNA_H-canaliculatus_M_contigs74551.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74551.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74551.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.520e-21
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   13 SLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            SLIILVQVVCSCLRHLRYPRSR+L LNLLVAFGRCCDDEARLQRLVP
Sbjct:   78 SLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVP 124
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BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.520e-21
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   13 SLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            SLIILVQVVCSCLRHLRYPRSR+L LNLLVAFGRCCDDEARLQRLVP
Sbjct:  246 SLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVP 292
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BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUP7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-7
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RDSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            +D   ++I++ ++CS LRH++ P S++ AL L+ A G+   DEARLQRL+P
Sbjct:  608 QDRNGIVIILSLICSSLRHVQVPESKLTALYLIRALGQFTSDEARLQRLIP 658
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BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWH5_BRELC)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 DSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            D   ++I++ ++CS LRH++ P S++ AL L+ A G+   DEARLQRL+P
Sbjct:  598 DRNGIVIVLSLICSSLRHVQVPESKLTALYLIRALGQFTSDEARLQRLIP 647
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BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGI3_PLAHL)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 DSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            D   ++I++ ++CS LRH++ P S++ AL L+ A G+   DEARLQRL+P
Sbjct:  605 DRNGIVIVLSLICSSLRHVQVPESKLTALYLIRALGQYTSDEARLQRLIP 654
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BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM04_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.610e-7
Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RDSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            +D   ++I++ ++CS LRH++ P S++ AL L+ + G+   DEARLQRL+P
Sbjct:  580 QDRNGIVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIP 630
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTH5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.620e-7
Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RDSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            +D   ++I++ ++CS LRH++ P S++ AL L+ + G+   DEARLQRL+P
Sbjct:  580 QDRNGIVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIP 630
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0L1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.570e-7
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 DSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            D   ++I++ ++CS LRH++ P S++ AL L+ + G+   DEARLQRL+P
Sbjct:  577 DRNGIVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIP 626
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4I0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.580e-7
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 DSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            D   ++I++ ++CS LRH++ P S++ AL L+ + G+   DEARLQRL+P
Sbjct:  601 DRNGIVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIP 650
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGW9_HYAAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.170e-7
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 DSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLVP 153
            D   ++I++  +CS LRH++ P S++ AL L+ + G+   DEARLQRL+P
Sbjct:  607 DRNGIVIILSSICSSLRHVQVPESKLTALYLIRSLGQYTSDEARLQRLIP 656
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74551.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
Non-specific1.520e-2195.74serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
Non-specific1.520e-2195.74serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
Non-specific1.020e-745.10serine/threonine protein kinase n=2 Tax=Nothophyto... [more]
Non-specific1.910e-746.00serine/threonine protein kinase n=1 Tax=Bremia lac... [more]
Non-specific1.910e-746.00serine/threonine protein kinase n=1 Tax=Plasmopara... [more]
Non-specific2.610e-743.14serine/threonine protein kinase n=1 Tax=Phytophtho... [more]
Non-specific2.620e-743.14serine/threonine protein kinase n=3 Tax=Phytophtho... [more]
Non-specific3.570e-744.00serine/threonine protein kinase n=1 Tax=Phytophtho... [more]
Non-specific3.580e-744.00serine/threonine protein kinase n=4 Tax=Phytophtho... [more]
Non-specific9.170e-744.00serine/threonine protein kinase n=1 Tax=Hyaloperon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74551contigH-canaliculatus_M_contigs74551:260..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRQ5
PFAMsHEAT,Pkinase,WD40
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons1
Evalue2.49e-22
EggNOG OGsKOG1240@1|root,KOG1240@2759|Eukaryota
EC2.7.11.1
Descriptionautophagy of peroxisome
Cds size156
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.9507132-CDS-H-canaliculatus_M_contigs74551:259..4151696854082.9507132-CDS-H-canaliculatus_M_contigs74551:259..415Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74551 260..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74551.1.1prot_H-canaliculatus_M_contigs74551.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74551 260..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74551.1.1

>prot_H-canaliculatus_M_contigs74551.1.1 ID=prot_H-canaliculatus_M_contigs74551.1.1|Name=mRNA_H-canaliculatus_M_contigs74551.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=52bp
RDSGSLIILVQVVCSCLRHLRYPRSRMLALNLLVAFGRCCDDEARLQRLV
PV
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mRNA from alignment at H-canaliculatus_M_contigs74551:260..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74551.1.1 ID=mRNA_H-canaliculatus_M_contigs74551.1.1|Name=mRNA_H-canaliculatus_M_contigs74551.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74551:260..415+ (Hapterophycus canaliculatus Oshoro7m male)
CGCGACAGCGGGTCCTTGATTATCCTCGTGCAGGTGGTGTGCTCGTGCCT
GCGGCACCTGCGGTATCCGCGAAGCCGGATGCTGGCGCTGAACCTCCTGG
TAGCGTTCGGGCGGTGCTGCGACGACGAGGCCAGGCTGCAGCGCCTGGTG
CCGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74551:260..415+

>mRNA_H-canaliculatus_M_contigs74551.1.1 ID=mRNA_H-canaliculatus_M_contigs74551.1.1|Name=mRNA_H-canaliculatus_M_contigs74551.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74551:260..415+ (Hapterophycus canaliculatus Oshoro7m male)
CGCGACAGCGGGTCCTTGATTATCCTCGTGCAGGTGGTGTGCTCGTGCCT
GCGGCACCTGCGGTATCCGCGAAGCCGGATGCTGGCGCTGAACCTCCTGG
TAGCGTTCGGGCGGTGCTGCGACGACGAGGCCAGGCTGCAGCGCCTGGTG
CCGGTG
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