mRNA_H-canaliculatus_M_contigs74530.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74530.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74530.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74530.1.1 vs.
Match: UCH (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM5_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.020e-7
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 GMQNKSNHCFLLSAIQVIRALPTCHSRLLNFSGAASPTAP 120
            GM N+ N CFLLSAIQ+IRALP CH+ +LNF  A     P
Sbjct:   42 GMINRENDCFLLSAIQMIRALPICHAAILNFPDATELAPP 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74530.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UCH4.020e-760.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74530contigH-canaliculatus_M_contigs74530:11..148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog61459.XP_007784080.1
Preferred nameUBP6
PFAMsUCH,ubiquitin
Model size138
Max annot lvl4751|Fungi
KEGG koko:K11843
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010498,GO:0010605,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022624,GO:0030162,GO:0030163,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0032268,GO:0032269,GO:0032991,GO:0036211,GO:0036459,GO:0042176,GO:0042177,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051603,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0072671,GO:0080090,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901799,GO:1902494,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1905368,GO:1905369
Exons1
Evalue0.000522
EggNOG OGsKOG1872@1|root,KOG1872@2759|Eukaryota,38F2F@33154|Opisthokonta,3NUIQ@4751|Fungi,3QMX4@4890|Ascomycota,20CN6@147545|Eurotiomycetes,3MS32@451870|Chaetothyriomycetidae
EC3.4.19.12
DescriptionBelongs to the peptidase C19 family
Cds size135
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.855893-CDS-H-canaliculatus_M_contigs74530:10..1451696854082.855893-CDS-H-canaliculatus_M_contigs74530:10..145Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74530 11..145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.8698807-UTR-H-canaliculatus_M_contigs74530:145..1481696854082.8698807-UTR-H-canaliculatus_M_contigs74530:145..148Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74530 146..148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74530.1.1prot_H-canaliculatus_M_contigs74530.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74530 11..145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74530.1.1

>prot_H-canaliculatus_M_contigs74530.1.1 ID=prot_H-canaliculatus_M_contigs74530.1.1|Name=mRNA_H-canaliculatus_M_contigs74530.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
MQNKSNHCFLLSAIQVIRALPTCHSRLLNFSGAASPTAPSYLGQ*
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mRNA from alignment at H-canaliculatus_M_contigs74530:11..148-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74530.1.1 ID=mRNA_H-canaliculatus_M_contigs74530.1.1|Name=mRNA_H-canaliculatus_M_contigs74530.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74530:11..148- (Hapterophycus canaliculatus Oshoro7m male)
GGGATGCAGAACAAGAGCAACCACTGCTTCCTGCTATCCGCGATCCAGGT
CATCAGAGCGTTGCCGACCTGCCACAGCAGGCTGCTCAACTTCTCCGGCG
CCGCCTCTCCCACTGCCCCAAGTTACTTGGGGCAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74530:11..148-

>mRNA_H-canaliculatus_M_contigs74530.1.1 ID=mRNA_H-canaliculatus_M_contigs74530.1.1|Name=mRNA_H-canaliculatus_M_contigs74530.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74530:11..148- (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGAACAAGAGCAACCACTGCTTCCTGCTATCCGCGATCCAGGTCAT
CAGAGCGTTGCCGACCTGCCACAGCAGGCTGCTCAACTTCTCCGGCGCCG
CCTCTCCCACTGCCCCAAGTTACTTGGGGCAGTGA
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