mRNA_H-canaliculatus_M_contigs74528.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74528.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74528.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX1_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.750e-65
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            QAQKDNYLPRLG GELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKG GNEGIT+CLLERGHPGLRLGDRHDP
Sbjct:  192 QAQKDNYLPRLGRGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGNGNEGITVCLLERGHPGLRLGDRHDP 299          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 7.710e-49
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    4 AQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            AQKD YLPRL  GELIPCFGLT  +SGSDAASMRD G V  ENGV+GVRA FKKRYITLAP+AG+VGLAFNL+DP+ LL G G EGI++ LLERGHPGLR+GDRHDP
Sbjct:  181 AQKDYYLPRLARGELIPCFGLTAAASGSDAASMRDTGTVVRENGVLGVRANFKKRYITLAPIAGVVGLAFNLRDPSRLLGGVGAEGISVVLLERGHPGLRIGDRHDP 287          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNX9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.790e-47
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            +A+KD YLP+L +GELIPCFGLTGP+SGSDAA+MRD   V EENG +GVRATFKKRYITLAPVAG VGLA  LKDPN LLKGKG EGI++ LLER  PGLR+G RHDP
Sbjct:  184 EAEKDYYLPKLATGELIPCFGLTGPASGSDAAAMRDQAIVVEENGQLGVRATFKKRYITLAPVAGCVGLAVQLKDPNGLLKGKGKEGISIFLLERDLPGLRMGPRHDP 291          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDN3_DIALT)

HSP 1 Score: 169 bits (427), Expect = 9.060e-47
Identity = 78/108 (72.22%), Postives = 92/108 (85.19%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            + Q++ YLP+L SGE+IPCFGLTGP+SGSDAASMRD G V E++GV+GV  TF KRYITLAPVA +VGLAFNL+DPN LLKGKG+EGIT+ LLER H GL +G RHDP
Sbjct:  168 ETQREYYLPKLASGEMIPCFGLTGPASGSDAASMRDTGIVVEKDGVLGVSVTFNKRYITLAPVAHVVGLAFNLQDPNGLLKGKGSEGITIALLERAHEGLNIGRRHDP 275          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSL9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.430e-46
Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            + QK+ +LP+L SGELIPCFGLTGP SGSDAASM D G V  ENGV+GVRATFKKRYITLAPVAG+VGLAF   DPN LLKG G+EGI + LLER HPGLR+G RHDP
Sbjct:  176 EEQKNYFLPKLASGELIPCFGLTGPRSGSDAASMPDGGEVVMENGVLGVRATFKKRYITLAPVAGVVGLAFKAHDPNGLLKGVGSEGICVALLERDHPGLRIGARHDP 283          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSJ0_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.430e-46
Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            + QK+ +LP+L SGELIPCFGLTGP SGSDAASM D G V  ENGV+GVRATFKKRYITLAPVAG+VGLAF   DPN LLKG G+EGI + LLER HPGLR+G RHDP
Sbjct:  176 EEQKNYFLPKLASGELIPCFGLTGPRSGSDAASMPDGGEVVMENGVLGVRATFKKRYITLAPVAGVVGLAFKAHDPNGLLKGVGSEGICVALLERDHPGLRIGARHDP 283          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WY16_9STRA)

HSP 1 Score: 158 bits (400), Expect = 5.370e-43
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    7 QKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHD 321
            QK+ +LP L SGE +PCFGLTGPSSGSDAA+MRD G V  +NGV+G+RATF KRYITLAPVA  VGLA ++KDP+NLLKG G+EGIT+ LLER HPGL +G RHD
Sbjct:  178 QKNYFLPALASGEHLPCFGLTGPSSGSDAANMRDTGVVCVQNGVLGIRATFSKRYITLAPVATCVGLAIDVKDPDNLLKGVGHEGITVALLERNHPGLEMGRRHD 282          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7S4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.190e-42
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASM-RDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            Q+QK+ +LPRL  G LIPCFGLTGP SGSDA S+    G V + NG +G+RATFKKRYITLAPVAG+VGL  NL DPNNLLK +G EG T+ LLER HPGLR+GDRH P
Sbjct:  203 QSQKEYFLPRLADGTLIPCFGLTGPHSGSDATSLIGSEGIVEQRNGELGIRATFKKRYITLAPVAGVVGLGLNLHDPNNLLKDQGQEGFTVALLERDHPGLRMGDRHIP 311          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Acyl-coenzyme (A dehydrogenase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTQ6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 5.270e-42
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHD 321
            +AQK+ YLP L SG+ +PCFGLTGPSSGSDAA+MRD G V E++GV+G+RATF KRYITLAPVA  VGLA ++KDP+ LLKG G+EGIT+ LLER H GL++G RHD
Sbjct:  194 EAQKNYYLPGLASGKQLPCFGLTGPSSGSDAAAMRDSGVVVEQDGVLGIRATFNKRYITLAPVATCVGLAIDVKDPHGLLKGLGHEGITVALLERDHAGLQMGRRHD 300          
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDY3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.260e-42
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    4 AQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEE-NGVMGVRATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGLRLGDRHDP 324
            AQK+ +LPRL  G LIPCFGLTGP SGSDA S+     V EE NG +GV ATFKKRYITLAPVAG+VGL  NL DPN LLKG G EG T+ LLER HPGLR+GDRH P
Sbjct:  204 AQKEYFLPRLADGTLIPCFGLTGPHSGSDATSLIGSDCVVEERNGELGVMATFKKRYITLAPVAGVVGLGLNLSDPNGLLKGNGGEGFTVALLERDHPGLRMGDRHIP 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74528.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Acyl-coenzyme2.750e-6597.22A dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
Acyl-coenzyme7.710e-4977.57A dehydrogenase n=1 Tax=Tribonema minus TaxID=3033... [more]
Acyl-coenzyme2.790e-4775.93A dehydrogenase n=2 Tax=Monodopsidaceae TaxID=4250... [more]
Acyl-coenzyme9.060e-4772.22A dehydrogenase n=1 Tax=Diacronema lutheri TaxID=2... [more]
Acyl-coenzyme3.430e-4675.00A dehydrogenase n=2 Tax=Phaeomonas parva TaxID=124... [more]
Acyl-coenzyme3.430e-4675.00A dehydrogenase n=2 Tax=Phaeomonas parva TaxID=124... [more]
Acyl-coenzyme5.370e-4371.43A dehydrogenase n=1 Tax=Aphanomyces euteiches TaxI... [more]
Acyl-coenzyme2.190e-4268.81A dehydrogenase (Fragment) n=1 Tax=Leptocylindrus ... [more]
Acyl-coenzyme5.270e-4269.16A dehydrogenase n=1 Tax=Pythium brassicum TaxID=14... [more]
Hypothetical6.260e-4270.37protein (Fragment) n=1 Tax=Attheya septentrionalis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74528contigH-canaliculatus_M_contigs74528:2..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGX1
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N,DUF1974
Model size324
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.51e-66
EggNOG OGsCOG1960@1|root,KOG0137@2759|Eukaryota
Descriptionlong-chain-acyl-CoA dehydrogenase activity
Cds size324
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.8097885-CDS-H-canaliculatus_M_contigs74528:1..1031696854082.8097885-CDS-H-canaliculatus_M_contigs74528:1..103Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74528 2..103 -
1696854082.8211653-CDS-H-canaliculatus_M_contigs74528:329..5511696854082.8211653-CDS-H-canaliculatus_M_contigs74528:329..551Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74528 330..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74528.1.1prot_H-canaliculatus_M_contigs74528.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74528 2..551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74528.1.1

>prot_H-canaliculatus_M_contigs74528.1.1 ID=prot_H-canaliculatus_M_contigs74528.1.1|Name=mRNA_H-canaliculatus_M_contigs74528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=108bp
QAQKDNYLPRLGSGELIPCFGLTGPSSGSDAASMRDVGYVTEENGVMGVR
ATFKKRYITLAPVAGIVGLAFNLKDPNNLLKGKGNEGITLCLLERGHPGL
RLGDRHDP
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mRNA from alignment at H-canaliculatus_M_contigs74528:2..551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74528.1.1 ID=mRNA_H-canaliculatus_M_contigs74528.1.1|Name=mRNA_H-canaliculatus_M_contigs74528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=550bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74528:2..551- (Hapterophycus canaliculatus Oshoro7m male)
CAGGCTCAGAAGGACAACTATCTCCCCCGCCTCGGAAGCGGAGAGCTGAT CCCCTGCTTCGGCCTGACCGGTCCGTCGTCCGGCTCTGACGCGGCCTCTA TGCGCGACGTGGGCTACGTGACCGAGGAGAACGGGGTGATGGGAGTCAGG GCGACCTTCAAGAAGCGCTACATCACGCTTGCACCCGTTGCTGGCATCGT GGGTCTGGCGTTCAACCTCAAGGTGAGGAGGGGAGCGCGCTGAGCCTCGA AGGGTGATGTTGCTGCGTTTGTCCTTATCGTCGGCGATCTTCGGTGTTCC TTGTTGATGTTCTTGGGGTTGCTCCCTCTTTTGTCGCGAGGTCGTGGCAG TTCCTTGTCTCCTCTTTTCACGCCCTTCGTTGTTGTATCACCAGCTGCCC CTCTTACGACTGCACGTGCTGTTTGGATGGTGTGCGCTCTCTCGACAGGA CCCGAACAACCTGCTTAAGGGCAAAGGCAACGAGGGCATCACGCTGTGCC TCCTCGAAAGGGGACACCCTGGTCTGCGCCTCGGCGACCGCCACGACCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74528:2..551-

>mRNA_H-canaliculatus_M_contigs74528.1.1 ID=mRNA_H-canaliculatus_M_contigs74528.1.1|Name=mRNA_H-canaliculatus_M_contigs74528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74528:2..551- (Hapterophycus canaliculatus Oshoro7m male)
CAGGCTCAGAAGGACAACTATCTCCCCCGCCTCGGAAGCGGAGAGCTGAT
CCCCTGCTTCGGCCTGACCGGTCCGTCGTCCGGCTCTGACGCGGCCTCTA
TGCGCGACGTGGGCTACGTGACCGAGGAGAACGGGGTGATGGGAGTCAGG
GCGACCTTCAAGAAGCGCTACATCACGCTTGCACCCGTTGCTGGCATCGT
GGGTCTGGCGTTCAACCTCAAGGACCCGAACAACCTGCTTAAGGGCAAAG
GCAACGAGGGCATCACGCTGTGCCTCCTCGAAAGGGGACACCCTGGTCTG
CGCCTCGGCGACCGCCACGACCCC
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