mRNA_H-canaliculatus_M_contigs74521.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74521.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74521.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74521.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQP2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.410e-14
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   25 PGADVFLGDTGASVHCVGHDQHVRNKRSPLPEEQLLSVGDGFKLPITCVGDLDLVLHRMKDGRPRNDVPVTLTNVFVVPDLFL 273
            PGA VFLG T A +H    +  V N+R P P+EQLL + DG ++P+   GDLD+V H  +D      V VTLT V VVP L L
Sbjct:    9 PGATVFLGHTSAKIHVARSEDKVDNRRLPRPQEQLLMLSDGRRVPVKLFGDLDVVFHCQRD------VCVTLTGVSVVPGLVL 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74521.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.410e-1448.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74521contigH-canaliculatus_M_contigs74521:26..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.773235-CDS-H-canaliculatus_M_contigs74521:25..3221696854082.773235-CDS-H-canaliculatus_M_contigs74521:25..322Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74521 26..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74521.1.1prot_H-canaliculatus_M_contigs74521.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74521 26..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74521.1.1

>prot_H-canaliculatus_M_contigs74521.1.1 ID=prot_H-canaliculatus_M_contigs74521.1.1|Name=mRNA_H-canaliculatus_M_contigs74521.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=99bp
MRIFNGLLPGADVFLGDTGASVHCVGHDQHVRNKRSPLPEEQLLSVGDGF
KLPITCVGDLDLVLHRMKDGRPRNDVPVTLTNVFVVPDLFLDIISCNKI
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mRNA from alignment at H-canaliculatus_M_contigs74521:26..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74521.1.1 ID=mRNA_H-canaliculatus_M_contigs74521.1.1|Name=mRNA_H-canaliculatus_M_contigs74521.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74521:26..322+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGATCTTCAACGGCCTTCTCCCGGGTGCGGATGTCTTCCTCGGCGA
CACCGGCGCTTCCGTCCACTGCGTCGGCCATGACCAGCACGTCCGAAATA
AGCGTTCGCCGTTACCGGAGGAACAACTTTTGTCTGTGGGAGATGGTTTC
AAGCTTCCGATCACATGCGTCGGTGATCTGGATCTCGTCTTGCATCGCAT
GAAGGACGGCCGCCCACGGAACGATGTCCCTGTCACTCTGACCAACGTTT
TCGTCGTCCCCGATCTCTTTTTAGACATCATCTCTTGTAACAAGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74521:26..322+

>mRNA_H-canaliculatus_M_contigs74521.1.1 ID=mRNA_H-canaliculatus_M_contigs74521.1.1|Name=mRNA_H-canaliculatus_M_contigs74521.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=297bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74521:26..322+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGATCTTCAACGGCCTTCTCCCGGGTGCGGATGTCTTCCTCGGCGA
CACCGGCGCTTCCGTCCACTGCGTCGGCCATGACCAGCACGTCCGAAATA
AGCGTTCGCCGTTACCGGAGGAACAACTTTTGTCTGTGGGAGATGGTTTC
AAGCTTCCGATCACATGCGTCGGTGATCTGGATCTCGTCTTGCATCGCAT
GAAGGACGGCCGCCCACGGAACGATGTCCCTGTCACTCTGACCAACGTTT
TCGTCGTCCCCGATCTCTTTTTAGACATCATCTCTTGTAACAAGATC
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