mRNA_H-canaliculatus_M_contigs74479.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74479.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74479.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.560e-32
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE 183
            GLSIGQAGEFDYSGSQ AIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE
Sbjct:   14 GLSIGQAGEFDYSGSQ-AIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE 73
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Multifunctional (pyrimidine synthesis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.940e-29
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEV 186
            GLSIGQAGEFDYSGSQ AIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE+
Sbjct:  252 GLSIGQAGEFDYSGSQ-AIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEI 312
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Multifunctional (pyrimidine synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIG0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.130e-27
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEV 186
            GLSIGQAGEFDYSGSQ AIKALKEEG+EVVL+NPNIATVQTSKNLGGASPDRTYFLPV P+V
Sbjct:  368 GLSIGQAGEFDYSGSQ-AIKALKEEGLEVVLINPNIATVQTSKNLGGASPDRTYFLPVKPDV 428
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Cad (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0U1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.860e-25
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEV 186
            GLSIGQAGEFDYSGSQ AIKALKEEGIEV+L+NPN+ATVQTSK+LG ASPD+ YFLP+ PEV
Sbjct:  488 GLSIGQAGEFDYSGSQ-AIKALKEEGIEVILINPNVATVQTSKSLGKASPDKVYFLPIRPEV 548
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV27_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 2.240e-23
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE 183
            GLSIGQAGEFDYSG+Q AIKALKEEGI VV++NPNIATVQTS NL  ASPD+ YFLPV P+
Sbjct:  136 GLSIGQAGEFDYSGAQ-AIKALKEEGIRVVVINPNIATVQTSHNLSSASPDKIYFLPVQPD 195
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZV2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.290e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    4 LSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEV 186
            LSIGQAGEFDYSGSQ AIKALKEEG+EVVLVNPNIATVQTSK LGGASPDR Y LPV  ++
Sbjct:  464 LSIGQAGEFDYSGSQ-AIKALKEEGVEVVLVNPNIATVQTSKGLGGASPDRVYSLPVKKDI 523
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Pyr1-3 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z374_SYMMI)

HSP 1 Score: 96.3 bits (238), Expect = 8.900e-23
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEV 186
            GLSIGQAGEFDYSGSQ A KALKEEGIEV+++NPNIATVQTSK+LG +SPD+ YFLP+   V
Sbjct:    8 GLSIGQAGEFDYSGSQ-ACKALKEEGIEVIVINPNIATVQTSKHLGKSSPDKVYFLPIRANV 68
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5X3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.280e-20
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPEV 186
            GLSIGQAGEFDYSGSQ AIKALKEE IEV+L+NPNIATVQTSKN      D+ YFLPVTPE+
Sbjct:  426 GLSIGQAGEFDYSGSQ-AIKALKEENIEVILINPNIATVQTSKNFA----DKVYFLPVTPEM 482
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Putative (CAD trifunctional protein (Fragment) n=3 Tax=Noterus TaxID=110026 RepID=A0A1C7A917_9COLE)

HSP 1 Score: 87.4 bits (215), Expect = 6.290e-20
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE 183
            GLSIGQAGEFDYSGSQ AIKALKEE I+ VL+NPNIATVQTSK L     D+ YFLP+TPE
Sbjct:   11 GLSIGQAGEFDYSGSQ-AIKALKEENIQTVLINPNIATVQTSKGLA----DKVYFLPLTPE 66
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BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Match: Carbomoylphosphate (synthase (Fragment) n=45 Tax=Formicinae TaxID=7479 RepID=D3GM50_9HYME)

HSP 1 Score: 86.3 bits (212), Expect = 6.990e-20
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPDRTYFLPVTPE 183
            GLSIGQAGEFDYSGSQ AIKALKEE I+ +L+NPNIATVQTSK +     D+ YFLP+TPE
Sbjct:  102 GLSIGQAGEFDYSGSQ-AIKALKEESIQTLLINPNIATVQTSKGMA----DKVYFLPITPE 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74479.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.560e-3298.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Multifunctional6.940e-2996.77pyrimidine synthesis protein n=1 Tax=Ectocarpus si... [more]
Multifunctional2.130e-2791.94pyrimidine synthesis protein n=1 Tax=Tribonema min... [more]
Cad7.860e-2583.87protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical2.240e-2380.33protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical3.290e-2385.25protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Pyr1-38.900e-2377.42protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
Hypothetical2.280e-2079.03protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Putative6.290e-2077.05CAD trifunctional protein (Fragment) n=3 Tax=Noter... [more]
Carbomoylphosphate6.990e-2073.77synthase (Fragment) n=45 Tax=Formicinae TaxID=7479... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74479contigH-canaliculatus_M_contigs74479:19..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRF3
PFAMsCPSase_L_D2,CPSase_L_D3,CPSase_sm_chain,GATase,MGS
Model size192
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00010,RC00043,RC00064,RC00632,RC02750,RC02798,RC02850,RC03314
KEGG koko:K01954,ko:K11540,ko:K11541
KEGG ReactionR00256,R00575,R01395,R01397,R01993,R10948,R10949
KEGG Pathwayko00240,ko00250,ko01100,map00240,map00250,map01100
KEGG ModuleM00051
Hectar predicted targeting categoryother localisation
GOsGO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004070,GO:0004087,GO:0004088,GO:0004151,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006207,GO:0006520,GO:0006525,GO:0006526,GO:0006541,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009987,GO:0016053,GO:0016597,GO:0016740,GO:0016741,GO:0016743,GO:0016787,GO:0016810,GO:0016812,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019627,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494
Exons2
Evalue1.14e-29
EggNOG OGsCOG0458@1|root,KOG0370@2759|Eukaryota
EC2.1.3.2,3.5.2.3,6.3.5.5
Descriptioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Cds size192
COG categoryEF
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.262366-CDS-H-canaliculatus_M_contigs74479:18..1621696854082.262366-CDS-H-canaliculatus_M_contigs74479:18..162Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74479 19..162 -
1696854082.276994-CDS-H-canaliculatus_M_contigs74479:504..5521696854082.276994-CDS-H-canaliculatus_M_contigs74479:504..552Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74479 505..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74479.1.1prot_H-canaliculatus_M_contigs74479.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74479 19..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74479.1.1

>prot_H-canaliculatus_M_contigs74479.1.1 ID=prot_H-canaliculatus_M_contigs74479.1.1|Name=mRNA_H-canaliculatus_M_contigs74479.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
GLSIGQAGEFDYSGSQQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASP
DRTYFLPVTPEVRT
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mRNA from alignment at H-canaliculatus_M_contigs74479:19..552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74479.1.1 ID=mRNA_H-canaliculatus_M_contigs74479.1.1|Name=mRNA_H-canaliculatus_M_contigs74479.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74479:19..552- (Hapterophycus canaliculatus Oshoro7m male)
GGGCTGAGCATCGGCCAGGCGGGAGAATTCGACTACAGCGGGTCGCAGGT
GTGTGCGTCCGGCGATTCCTTGGGAGGGGAGATCGACCTGCGGGAGACGA
AAGTCGGCCCGCTAGTGAGCGGAAGGGTTGTGGTGCTCCATACTTGTACA
CTTTGGTGGCATGCCCTAGACTACAGCAGCAGCAGAAAAAGCAGAAGCAG
ATGCAAAAGCAGGAGCAGAAGCGGTGTTTCGTTCCTCTCCTCTCCTTGCT
CGCGGGTGGCGTGAGTTAAGGTCATTCCCCCTTGCTCTTGTGCAAATTGC
CACTCGTAGCCGGTGCATTTTTTTTTTCAACATTTTTCTCAACATTTTCT
TTTGGGTTGTCCGTCTCGCGTCCGGGTGGCGTCGAACGAGCAGGCCATCA
AAGCCTTGAAGGAGGAGGGCATCGAGGTGGTCCTCGTCAACCCGAACATC
GCCACGGTGCAGACGTCCAAGAACCTCGGAGGGGCGTCCCCGGACAGGAC
CTACTTCCTGCCGGTCACACCGGAGGTACGCACT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74479:19..552-

>mRNA_H-canaliculatus_M_contigs74479.1.1 ID=mRNA_H-canaliculatus_M_contigs74479.1.1|Name=mRNA_H-canaliculatus_M_contigs74479.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74479:19..552- (Hapterophycus canaliculatus Oshoro7m male)
GGGCTGAGCATCGGCCAGGCGGGAGAATTCGACTACAGCGGGTCGCAGCA
GGCCATCAAAGCCTTGAAGGAGGAGGGCATCGAGGTGGTCCTCGTCAACC
CGAACATCGCCACGGTGCAGACGTCCAAGAACCTCGGAGGGGCGTCCCCG
GACAGGACCTACTTCCTGCCGGTCACACCGGAGGTACGCACT
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