mRNA_H-canaliculatus_M_contigs74476.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74476.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74476.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.130e-16
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   43 INETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            INETRGLGFDDWDL+FYEKLF +KLGRDPTDVELFDMGQ   E
Sbjct:  282 INETRGLGFDDWDLEFYEKLFKEKLGRDPTDVELFDMGQANSE 324
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RP44_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.600e-13
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   28 RSTNQINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            ++   INET+GLGFDD+DLD+Y  LF +KLGRDPTDVE FDMGQ   E
Sbjct:  183 KALEAINETKGLGFDDFDLDYYTNLFKEKLGRDPTDVECFDMGQSNSE 230
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEH8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.310e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   40 QINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            +INE +GLGFDD+DLD+Y KLF +KLGRDPTDVE FDMGQ   E
Sbjct:   91 KINEEKGLGFDDFDLDYYTKLFKEKLGRDPTDVECFDMGQSNSE 134
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8A4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.310e-12
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   28 RSTNQINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            ++  +INE RGLGFDD+DLD+Y  LF +KLGRDPTDVE FDMGQ   E
Sbjct:  240 KALERINEERGLGFDDFDLDYYTNLFKEKLGRDPTDVECFDMGQSNSE 287
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWG2_THAOC)

HSP 1 Score: 70.1 bits (170), Expect = 1.310e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   28 RSTNQINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            ++  +INE RGLGFD++DLDFY +LF +KLGRDPTDVE FDMGQ   E
Sbjct:  192 KALERINEERGLGFDEFDLDFYTELFKEKLGRDPTDVECFDMGQSNSE 239
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZK75_TRICV)

HSP 1 Score: 69.3 bits (168), Expect = 2.340e-12
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   40 QINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            +INE RGLGFDD+DLD+Y  LF +KLGRDPTDVE FDMGQ   E
Sbjct:  207 RINEERGLGFDDFDLDYYTNLFKEKLGRDPTDVECFDMGQSNSE 250
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YY21_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.490e-11
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   43 INETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            IN T GLGFD+WDLD+Y  LF +KL RDPTDVE FDMGQ   E
Sbjct:  191 INATNGLGFDEWDLDYYTNLFKEKLQRDPTDVECFDMGQSNSE 233
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRB7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   40 QINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            +IN   GLGFDD+DLD+Y  LF +KLGRDPTDVE FDMGQ   E
Sbjct:   68 KINGEMGLGFDDFDLDYYTDLFREKLGRDPTDVECFDMGQSNSE 111
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CE77_THAPS)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-11
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   40 QINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            +IN  RGLGFDD+DLDFY +LF +KLGR+PTDVE FDMGQ   E
Sbjct:  193 RINAERGLGFDDFDLDFYTELFKEKLGRNPTDVECFDMGQSNSE 236
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CHX5_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 2.190e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   40 QINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFDMGQVRLE 171
            +INE  GL FDDWDLD+Y KLF D++GR+PT+VELFD+GQ   E
Sbjct:  267 EINEEMGLAFDDWDLDYYVKLFRDEIGRNPTNVELFDLGQSNSE 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74476.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Phosphoribosylformylglycinamidine1.130e-1686.05synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Phosphoribosylformylglycinamidine9.600e-1366.67synthase (Fragment) n=2 Tax=Ditylum brightwellii T... [more]
Phosphoribosylformylglycinamidine1.310e-1272.73synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102... [more]
Phosphoribosylformylglycinamidine1.310e-1266.67synthase (Fragment) n=1 Tax=Odontella aurita TaxID... [more]
Phosphoribosylformylglycinamidine1.310e-1266.67synthase n=1 Tax=Thalassiosira oceanica TaxID=1597... [more]
Hypothetical2.340e-1272.73protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Uncharacterized1.490e-1169.77protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Hypothetical2.090e-1168.18protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Phosphoribosylformylglycinamidine2.180e-1170.45synthase n=1 Tax=Thalassiosira pseudonana TaxID=35... [more]
Phosphoribosylformylglycinamidine2.190e-1165.91synthase n=1 Tax=Chloropicon roscoffensis TaxID=14... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74476contigH-canaliculatus_M_contigs74476:146..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIP1
PFAMsAIRS_C,GATase_5
Model size177
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC01160
KEGG koko:K01952
KEGG ReactionR04463
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009532,GO:0009536,GO:0009555,GO:0009570,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0055046,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue1.85e-17
EggNOG OGsCOG0046@1|root,KOG1907@2759|Eukaryota
EC6.3.5.3
Descriptionphosphoribosylformylglycinamidine synthase activity
Cds size177
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.221767-CDS-H-canaliculatus_M_contigs74476:145..3221696854082.221767-CDS-H-canaliculatus_M_contigs74476:145..322Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74476 146..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74476.1.1prot_H-canaliculatus_M_contigs74476.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74476 146..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74476.1.1

>prot_H-canaliculatus_M_contigs74476.1.1 ID=prot_H-canaliculatus_M_contigs74476.1.1|Name=mRNA_H-canaliculatus_M_contigs74476.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=59bp
MNVLFLPTTRSTNQINETRGLGFDDWDLDFYEKLFIDKLGRDPTDVELFD
MGQVRLEK*
back to top

mRNA from alignment at H-canaliculatus_M_contigs74476:146..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74476.1.1 ID=mRNA_H-canaliculatus_M_contigs74476.1.1|Name=mRNA_H-canaliculatus_M_contigs74476.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74476:146..322+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAACGTTTTGTTTCTGCCGACCACTCGATCGACCAATCAGATCAACGA
GACTCGAGGGCTCGGGTTTGACGACTGGGACCTGGATTTCTACGAGAAGC
TTTTCATCGACAAGCTCGGGAGGGATCCCACTGACGTCGAACTCTTCGAC
ATGGGGCAGGTGAGGCTCGAGAAATAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74476:146..322+

>mRNA_H-canaliculatus_M_contigs74476.1.1 ID=mRNA_H-canaliculatus_M_contigs74476.1.1|Name=mRNA_H-canaliculatus_M_contigs74476.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74476:146..322+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAACGTTTTGTTTCTGCCGACCACTCGATCGACCAATCAGATCAACGA
GACTCGAGGGCTCGGGTTTGACGACTGGGACCTGGATTTCTACGAGAAGC
TTTTCATCGACAAGCTCGGGAGGGATCCCACTGACGTCGAACTCTTCGAC
ATGGGGCAGGTGAGGCTCGAGAAATAA
back to top