mRNA_H-canaliculatus_M_contigs74453.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74453.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74453.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74453.1.1 vs.
Match: MFS (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G798_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 6.400e-26
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 SVYGMQYREKSIAKSLSKISLNELDIAGQGKYVEHAAA-AEEEEVAVTWPLVTAVLVAILLEFLVGFNIGVMVSEE 225
            SVYGMQYREKSIAKSLSK+SL +LDIAGQ KY+E A A   E+EV VTWPLVTAVLVA+LLEFLVGFNIGVM + E
Sbjct:   54 SVYGMQYREKSIAKSLSKLSLTDLDIAGQAKYLEGAEAEGVEDEVVVTWPLVTAVLVAVLLEFLVGFNIGVMNAPE 129
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BLAST of mRNA_H-canaliculatus_M_contigs74453.1.1 vs.
Match: Solute (carrier family facilitated glucose transporter member 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG82_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.730e-10
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SVYGMQYREKSIAKSLSKISLNELDIAGQGKYVEHAAA-AEEEEVAVTWPLVTAVLVAILLEFLVGFNIGVMVSEE 225
            SVYGMQYRE+SIAKSLS++SL   D+ G     +   A  + +EV +T PL+ A++VA++L FLVG+N GVM + E
Sbjct:   63 SVYGMQYREQSIAKSLSRVSL--ADMGGAINEQDALLANVDVDEVVLTTPLMAAIMVAVMLMFLVGYNTGVMNAVE 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74453.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
MFS6.400e-2678.95domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Solute3.730e-1051.32carrier family facilitated glucose transporter mem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74453contigH-canaliculatus_M_contigs74453:186..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G798
PFAMsSugar_tr
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K08142
KEGG TC2.A.1.1.12
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-23
EggNOG OGsCOG0477@1|root,KOG0569@2759|Eukaryota
Descriptiontransmembrane transporter activity
Cds size213
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.0482411-CDS-H-canaliculatus_M_contigs74453:185..3981696854082.0482411-CDS-H-canaliculatus_M_contigs74453:185..398Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74453 186..398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.061041-UTR-H-canaliculatus_M_contigs74453:398..4101696854082.061041-UTR-H-canaliculatus_M_contigs74453:398..410Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74453 399..410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74453.1.1prot_H-canaliculatus_M_contigs74453.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74453 186..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74453.1.1

>prot_H-canaliculatus_M_contigs74453.1.1 ID=prot_H-canaliculatus_M_contigs74453.1.1|Name=mRNA_H-canaliculatus_M_contigs74453.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=71bp
MQYREKSIAKSLSKISLNELDIAGQGKYVEHAAAAEEEEVAVTWPLVTAV
LVAILLEFLVGFNIGVMVSEE
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mRNA from alignment at H-canaliculatus_M_contigs74453:186..410-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74453.1.1 ID=mRNA_H-canaliculatus_M_contigs74453.1.1|Name=mRNA_H-canaliculatus_M_contigs74453.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74453:186..410- (Hapterophycus canaliculatus Oshoro7m male)
AGCGTTTACGGCATGCAGTACCGCGAGAAAAGCATCGCGAAGTCACTGTC
CAAGATAAGCCTGAACGAATTGGACATAGCCGGTCAGGGGAAGTACGTGG
AGCACGCGGCGGCGGCAGAAGAGGAGGAGGTGGCGGTGACGTGGCCGCTC
GTGACCGCAGTGCTCGTGGCCATTCTCCTGGAATTCCTGGTGGGGTTCAA
CATCGGGGTCATGGTGAGCGAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74453:186..410-

>mRNA_H-canaliculatus_M_contigs74453.1.1 ID=mRNA_H-canaliculatus_M_contigs74453.1.1|Name=mRNA_H-canaliculatus_M_contigs74453.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=213bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74453:186..410- (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGTACCGCGAGAAAAGCATCGCGAAGTCACTGTCCAAGATAAGCCT
GAACGAATTGGACATAGCCGGTCAGGGGAAGTACGTGGAGCACGCGGCGG
CGGCAGAAGAGGAGGAGGTGGCGGTGACGTGGCCGCTCGTGACCGCAGTG
CTCGTGGCCATTCTCCTGGAATTCCTGGTGGGGTTCAACATCGGGGTCAT
GGTGAGCGAGGAG
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