mRNA_H-canaliculatus_M_contigs7445.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7445.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7445.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 8.700e-104
Identity = 189/236 (80.08%), Postives = 202/236 (85.59%), Query Frame = 1
Query:    1 DVRAPALQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSS--SSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALA 702
            D+    +QSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKW QADVTP+RQAVLDRLSSGQVF  S S  N  G + + G G+   S Y NG +R+PGDPPAQPNFVGG R G R+GGR ERRREAVVG ASFKAVGSALLVAEMSANF+QFA HFP IGTD+LTRL EL RVFNSRATQLVLGAGAIHS AKLKSISAKHLALC QSLGLV+SLIP LKAAL+
Sbjct:  666 DITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWTQADVTPERQAVLDRLSSGQVFRPSVSAANANGTDGKEGSGAGGGSGYDNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAVVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRVFNSRATQLVLGAGAIHSTAKLKSISAKHLALCSQSLGLVRSLIPFLKAALS 901          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vps54 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD30_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 9.860e-71
Identity = 149/177 (84.18%), Postives = 153/177 (86.44%), Query Frame = 2
Query:  764 DYRDHRDKILNKFVSMIEELIEARSSSLKHTDWDTPGGXXXXXXXXXXXXKV----AAAQPMAEGSAXXXXXXXXXXGEPCQFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFAVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSSTLGLEQVIASIYGSG 1282
            DYRDHRDKIL KFVSMIEELIEARS +LK TDWDTPGG XXXXXXXXXXX      AAA   A    XXXXXXXXXX +PCQFTADVRK VTAMHNILQQQLPPEQLQAVFRRMFAVI RKVPACF+REGVSPSTAAGRQRILDD+ FACAALSTLRGVDSSTLGLEQ IA IYG G
Sbjct:  100 DYRDHRDKILTKFVSMIEELIEARSGTLKLTDWDTPGGGXXXXXXXXXXXXXXXXXAAA---AXXXXXXXXXXXXXXADPCQFTADVRKGVTAMHNILQQQLPPEQLQAVFRRMFAVIPRKVPACFQREGVSPSTAAGRQRILDDVDFACAALSTLRGVDSSTLGLEQAIAEIYGKG 273          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.190e-51
Identity = 121/255 (47.45%), Postives = 161/255 (63.14%), Query Frame = 1
Query:   19 LQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVF-------PSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERR-REAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
            L ++ER+SG + Y LRST+L+QAKAF+E + E    +LV  LD+EKW QADV+P RQ  +DRLSSGQ F       P++   ++            +++ A G ++ P +   +    G       RGGR  R   +A V  +SFK V S LL+ EM    +  AAHFP + TDVL R+ EL R+FN+RATQLVL AGAIHS A+L  I+AKHLAL CQ LGLV +LIP ++A+L+ +LP KHHLLL+ MD V Q
Sbjct:   74 LTAMERISGRSCYALRSTMLAQAKAFLEHKQEVQMASLVATLDSEKWTQADVSPQRQQAIDRLSSGQAFLPGTLVTPTNKPNDHXXXXXXXXDNPVAATAAAGEVKRPSETEGRAVTTGR----TDRGGRSRRELNDASVDGSSFKVVWSVLLLIEMVTAHLAIAAHFPMLATDVLQRVVELVRLFNTRATQLVLLAGAIHSTARLTKITAKHLALTCQCLGLVMALIPHVRASLSAQLPPKHHLLLSDMDRVKQ 324          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.430e-50
Identity = 125/254 (49.21%), Postives = 156/254 (61.42%), Query Frame = 1
Query:   19 LQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVF-----PSSASQENRAGKEAENGG--GSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
            LQ VE+LSG + Y LRSTLL+QAKAF+E +HEA   +LV  LD+EKW QADV+ +RQA LDRLS+GQ F     P   +Q +             SS+  A GT R  G                          EA+V  + +K V S LL+ EM  + +  AAHFP + TDVL R+ EL R+FNSRATQLVL AGAIHSAA+L  I+AKHLAL  Q LGLV +L+P ++AAL+ +LP KHHLLLA +D V Q
Sbjct:   88 LQLVEKLSGRSCYGLRSTLLAQAKAFLEHKHEAQLASLVATLDSEKWAQADVSSERQAALDRLSNGQAFLPRSYPKLQTQTSXXXXXXXXATLQSSSAKRAKGTKREVG--------------------------EAMVEGSRYKVVWSVLLLMEMVMSLLATAAHFPMLATDVLQRIVELVRLFNSRATQLVLQAGAIHSAARLTKITAKHLALTSQCLGLVMALLPHIRAALSAQLPPKHHLLLADLDRVKQ 315          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 8.720e-42
Identity = 109/253 (43.08%), Postives = 153/253 (60.47%), Query Frame = 1
Query:    1 DVRAPALQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
            D        VE L G +G KLR TLL+Q KA+VE  H+ANK  LV           DV+P+RQA++D ++ G V   + +  + A   + NG   ++++A  + R                         +R+REA++  A +KAV S LL+ EM+ N ++ AA+FPA   DVL RL+EL R++N+R  QLVLGAGAI SA++L+SISAKHLALC  SLGLV++L+P ++AA A  LP+KH LLL +M+ VSQ
Sbjct:  631 DAALEFTSKVEALCGSSGSKLRVTLLNQTKAYVECHHDANKTKLV-----------DVSPERQAMMDHITGGHVLSHALAPSHLAA--SMNGASPAAAFAPQSTRSK-----------------------DRKREALLEGARYKAVWSTLLLVEMAYNQLRMAAYFPAAAPDVLGRLSELLRLYNARTMQLVLGAGAIQSASRLRSISAKHLALCAHSLGLVRALVPHMRAAFAAHLPRKHQLLLVEMERVSQ 847          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vps54 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C131_THAPS)

HSP 1 Score: 164 bits (416), Expect = 2.150e-40
Identity = 112/242 (46.28%), Postives = 149/242 (61.57%), Query Frame = 1
Query:   28 VERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
            +ER SG   Y LRSTLL+QAK+FVE +HEAN  TLV  LD+E+WVQ  V+ DRQA L RL SG+   +S                     A G+I    D  A P+ VGG R         ++  +A V    FK V SALL+ EM  + V  AAHF  + T+V+ +++EL R+FN+RAT LVLGAGAIHSAA+LKSI+AKHLA+  Q +G+V +++P ++AAL  +LP K H LL  +D +
Sbjct: 1011 LERFSGRKAYGLRSTLLAQAKSFVERKHEANMSTLVAALDSERWVQCTVSADRQAALTRLCSGRAAFTSRKP------------------AAGSI----DNIASPS-VGGGR---------DKMTDAEVEGVRFKVVWSALLLLEMVMDDVACAAHFQTLATNVVGKVSELLRLFNTRATHLVLGAGAIHSAARLKSINAKHLAIVTQCIGIVLAILPHVRAALMAQLPAKQHSLLHDIDKI 1220          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS08_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.880e-39
Identity = 110/252 (43.65%), Postives = 147/252 (58.33%), Query Frame = 1
Query:   25 SVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVF---------PSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
            S+ER SG   Y LRSTLL+QAKAFVE +HE+N   L   LD+E+W Q DV+ +RQA L RL SG+           PSS++  N           ++S+  NGT +                        G++  +A V    +K V S LL+ EM  + V  AAHF  + T+V+ +++EL R+FNSRAT LVLGAGAIHSAA+LKSI+AKHLAL  Q LGL  S++P ++AAL  +LP K H LL  +D +
Sbjct:  638 SLERASGGKAYGLRSTLLAQAKAFVERKHESNMANLAAALDSERWTQCDVSTERQASLIRLCSGRAVLSYTFGGDTPSSSTTTNV-------NNATTSTTVNGTPKKD----------------------GKKLADAEVEGIRYKVVWSCLLLVEMVMSNVACAAHFQTLATNVVGKVSELLRLFNSRATTLVLGAGAIHSAARLKSINAKHLALVTQCLGLFISILPHVRAALMAQLPSKQHTLLGDLDKI 860          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEE6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.620e-39
Identity = 105/246 (42.68%), Postives = 142/246 (57.72%), Query Frame = 1
Query:   19 LQSVERLS-GCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
            L  VE LS G     LR+TLLSQAKAFVE +HE+N   +   LD+E+W Q DV+ DRQA L RL SG+   SS S   R G             A+ T + P                           EA V    +K V S+L + EM    +  AAHF ++ T+V+++++EL R+FNSR+TQLVLGAGAIHSAA+LKSI+AKHL+L  Q LG+  +++P ++AAL  +LP K H LL  +D++
Sbjct:  237 LSQVESLSPGFKATGLRATLLSQAKAFVERKHESNMSAMAAALDSERWTQCDVSADRQAQLTRLCSGRAVTSSRSSTTRPGG------------ASSTDKSP---------------------------EADVEGVRYKVVWSSLFLVEMVMMNIDCAAHFQSLATNVVSKVSELLRLFNSRSTQLVLGAGAIHSAARLKSINAKHLSLVTQCLGMTIAILPHVRAALMAQLPPKQHNLLTDLDSI 443          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWP7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.810e-39
Identity = 111/245 (45.31%), Postives = 147/245 (60.00%), Query Frame = 1
Query:   28 VERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQ--VFPSSASQENRAG-KEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
            +E  +G   Y LRSTLL+QAKAFVE +HE +  +L   LD+EKWVQ  V+P+RQA + RL SG+  +  S +SQ N A  K AE+     SS                N   G R             EA V    +K V S LL+ EM  + + FAAHF  + ++++ +++EL R+FNSR TQLVLGAGAIHS AKLKSI+AKHLAL  Q LG++ S++P ++AAL  +LP K H LLA +D V
Sbjct:  588 LEGFTGSKAYGLRSTLLAQAKAFVERKHENHMASLASALDSEKWVQISVSPERQAAIARLYSGRAALSRSKSSQGNLATLKTAESINNKRSSV---------------NISSGRRELV----------EAEVEGKKYKMVWSCLLLVEMVMSNIAFAAHFQTLASNIVGKVSELLRLFNSRTTQLVLGAGAIHSTAKLKSINAKHLALVSQCLGMLTSILPHVRAALMAQLPTKQHTLLADLDRV 807          
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZU2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.560e-39
Identity = 112/247 (45.34%), Postives = 146/247 (59.11%), Query Frame = 1
Query:   19 LQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
            +  VE+L+G  GY+LR TLLSQAK F+E + +  K +LV  LDAE+WV+ADVTP+RQA L+RL SG  F   A   + A  E+   G   SS A       GD                  GR +RR + V+G   FK V S LL+ EMS + +   A FPA+  DVL RL EL +++N+R+  LVL   A  SAAKL SI AKHLAL  QSL LV  ++P ++AAL   LPQ+   LL+Q+D V+Q
Sbjct:  581 IMQVEKLAGVTGYELRGTLLSQAKGFLEKKVQVQKASLVSTLDAERWVRADVTPERQAALERLVSGHAFLRVA---DLAKSESPLAGSPVSSNAGSPTAANGDAHT---------------GR-KRREDVVLGGRRFKVVWSVLLLLEMSTDLLSILAIFPALVVDVLQRLLELVKLYNTRSYHLVLLGEATQSAAKLTSIRAKHLALSSQSLHLVTHVLPHVRAALLGHLPQQRRALLSQLDKVTQ 808          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Vacuolar8.700e-10480.08protein sorting-associated protein 54 n=1 Tax=Ecto... [more]
Vps549.860e-7184.18domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical2.190e-5147.45protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical1.430e-5049.21protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Vacuolar8.720e-4243.08protein sorting-associated protein 54 (Fragment) n... [more]
Vps542.150e-4046.28domain-containing protein n=1 Tax=Thalassiosira ps... [more]
Hypothetical2.880e-3943.65protein (Fragment) n=1 Tax=Attheya septentrionalis... [more]
Hypothetical3.620e-3942.68protein (Fragment) n=1 Tax=Grammatophora oceanica ... [more]
Vacuolar3.810e-3945.31protein sorting-associated protein 54 n=1 Tax=Lept... [more]
Hypothetical4.560e-3945.34protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7445contigH-canaliculatus_M_contigs7445:77..5215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0A0
Preferred nameVPS54
PFAMsVps54,Vps54_N
Model size1303
Max annot lvl2759|Eukaryota
KEGG koko:K10357,ko:K17600
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
Exons6
Evalue1.56e-32
EggNOG OGsKOG2115@1|root,KOG2115@2759|Eukaryota
DescriptionVacuolar protein sorting-associated protein
Cds size546
COG categoryL
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7445.1.1prot_H-canaliculatus_M_contigs7445.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7445 2705..4536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854081.931286-UTR-H-canaliculatus_M_contigs7445:76..2411696854081.931286-UTR-H-canaliculatus_M_contigs7445:76..241Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7445 77..241 +
1696854081.9472175-UTR-H-canaliculatus_M_contigs7445:1641..18381696854081.9472175-UTR-H-canaliculatus_M_contigs7445:1641..1838Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7445 1642..1838 +
1696854081.9570894-UTR-H-canaliculatus_M_contigs7445:2604..27041696854081.9570894-UTR-H-canaliculatus_M_contigs7445:2604..2704Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7445 2605..2704 +
1696854082.0034065-UTR-H-canaliculatus_M_contigs7445:4536..46031696854082.0034065-UTR-H-canaliculatus_M_contigs7445:4536..4603Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7445 4537..4603 +
1696854082.0133119-UTR-H-canaliculatus_M_contigs7445:4987..52151696854082.0133119-UTR-H-canaliculatus_M_contigs7445:4987..5215Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7445 4988..5215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854081.9682178-CDS-H-canaliculatus_M_contigs7445:2704..27881696854081.9682178-CDS-H-canaliculatus_M_contigs7445:2704..2788Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7445 2705..2788 +
1696854081.978912-CDS-H-canaliculatus_M_contigs7445:3779..39961696854081.978912-CDS-H-canaliculatus_M_contigs7445:3779..3996Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7445 3780..3996 +
1696854081.9907806-CDS-H-canaliculatus_M_contigs7445:4291..45361696854081.9907806-CDS-H-canaliculatus_M_contigs7445:4291..4536Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7445 4292..4536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7445.1.1

>prot_H-canaliculatus_M_contigs7445.1.1 ID=prot_H-canaliculatus_M_contigs7445.1.1|Name=mRNA_H-canaliculatus_M_contigs7445.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=182bp
MSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKL
KSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQV
RLPGSPGQDSQQVCVDDRRADRGKIELAQAHRLGHARRRRRGGRGARRRG
KGGGGSTDGGGLRSGRGARGWGGGGALPVHG*
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mRNA from alignment at H-canaliculatus_M_contigs7445:77..5215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7445.1.1 ID=mRNA_H-canaliculatus_M_contigs7445.1.1|Name=mRNA_H-canaliculatus_M_contigs7445.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5139bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7445:77..5215+ (Hapterophycus canaliculatus Oshoro7m male)
GATGTACGCGCTCCCGCACTCCAGTCGGTGGAGCGGCTGAGCGGCTGCAA CGGCTACAAGCTGAGGAGCACGCTGCTCTCTCAGGCTAAGGCCTTCGTGG AGGCGCGGCACGAGGCCAACAAGCAGACCCTCGTCAAGCGGCTTGACGCA GAGAAATGGGTACAGGTGAGTGAGTGAGAGAAAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACATACAGACAGAGAG ACCCCCGGTAAAAATATAGAGAAACGCTGTTAATAGGGAAAAGTAAAATA AAAGAAAGTAAGAAAAAAGCGGAGGGATGTCGGCCGTGATCTGCGGACGA AGTCGACCGAGGCGGGAAGACAAAGGAGTGCGGAGTGCGGTGTAATGGTC GGCCGATGAAAGCATTGCAACAGTGATTCAGGCTTGGGGCCGATGAAGGG GAGGCCATTGGCGCGGGTCTTGGATTACAGTTCTGTCCTACGGAAGGACA AGTTCTTGTGCAATAGTTCCTGTTTCTGTTCTCTCGGAGTGTGGTGGTCC TTGGCACGCGCGTTCGAGTTCAGGCCCCTGCCTTTCTTTTTTGCCCGAGT TCGGGCGAGAGGGTGTTGGTCACCCGCTGCAGCTACGTTTGCTATGCTTG CTACGCTTGGGTCGAGTTTCGCTGTTGGTGCATGCGTGCTCGCCACTCGG CCAAGAAACTGGCGTGTTTCCCTCCATCAAGCAGTTCGTCGGGCTATTTG ATTCTTGCTGGTGTGTCGTCCTCTCTCAAGCGCACGCGCGCTGGCGCATC ACTGGTGCTTTTCAAGCGGGTCGTTTGGCCTCCTGTGAATCTTGTGTTCA TCGCTGTCTTCGAAGAAGTTTTTTTCTGGTTTCTGCGTGACATCTTGGTA CTCCGCACCAGCCCGTGCGGGACCACGGGACCCCGCCCGTGCTCCCTCAA GTGAGGCATGACAAGCAAGGACTCAAAGTGCGGAAAAAGTCTACCTCCAC TTCCAGACGGGACAGAGAACATGAAAATGACCCTGGAAATGTTCCCCCTG CGTTTCGGAAATCAAATCCAGGGGCGAAGGGGGCAAACCTGTAATGCGTG GAACAAACCGATTGATGCGATGACGCTCGTTGAGAACTCTTGCTTTTTGT GCCCCGAGTCTGCTGCCGTCTCTTTTTTTAAGAAAGGCCTAACGACACCG TAGGAACGCCTCCTGGGGGTACGTCGTGCGAGACGTGGCTCGTGGTTTGT GTTGAGTTCCAAACAACGAGGGTTCATTGTGTATGGCTTAGACAAAAAGC AGGAGAAAGCTGTAAAAATTCGGCGCAGCGTGTGCATGTATGTGTGTGTG TGTGGTAAAGTGTGTGGTATGAAATTTCGATTGGTGGATCATGCGTTTAG GGTTGCTTTCAACAATTTTCCATGTAAGTTGCAGTAGTTTCATGTCATTA CATATGTATATATACACATGTATATGTAACTATATATCATAACACGTCGA GTAAGTGAACGACTCCGCCGTGAAAAATTTAGTTTGCTCTTGTCGATCCG ACTTTCTCCTCGCAGGCGGACGTCACGCCCGACCGACAAGCCGTGCTGGA CCGGCTATCGAGCGGCCAGGTGTTTCCCTCCTCCGCCTCTCAGGAGAACC GCGCCGGCAAAGAGGCGGAAAACGGCGGGGGCAGCAGCAGCAGCTATGCC AACGGAACCATCAGGGTTCCCGGCGATCCGCCGGCGCAGCCGAATTTTGT GGGCGGTCCAAGGTTTGATACATGCACCATGTCTTTAGTCCTCCCCCCTC GTAGCGGCTGAGGATGTCGCTGTTGCTGTTCATGTAGATGTTGATGTTGC TGTTGCTTTTACTGATGCCGCTGGTGGTGTTGTTGATGGCGATGGTGGTG GTGGTGGTGTGGTGGCAGTTTGTGGCGGGGGTGGCCGTACCGCTAAGATT CTGTCCCGGCCATCTTGTTCCCTTCGGGGCTACGCTCGCCCCTCGGGGGC ATTGGCCTCTTCCCCGACTACTCTCACGCTGCGCGCATTGGTCTTTTCGC CCCGCCCATCCGTTGAGATAAGAGACAGACACGAAATGCGTCAGTTGCGT CAGTTGCCCCACGAACAAGCCAGCTACGACGGCCCCGTCCACGCTGTCGA GGGCTTCTTCCGCAACCCCCTTCGAGTCGTCGGCCTGCGCGAGCGATCGA CGCAGTTGGGAAGCAAAGGCCTCCACAACCCCCTTCCTTCCCCTACCCTT CCCCGTCCCCGCAGATCCGATCCAAGCGCGCGCAACACGCAGTTACTGCT GCTGTAGTTACCGGTGCTGTTGCTGGTGCTGTTGTCAAATCGCGTAGACT GGCGCACTTTCGTTCGTCGGGGGCTTAGCGTCGGCGCCTTCGACGCTTAC AATCGAAATCATGCACCGCGCGGGCGCACGGCTCGCACCCTGCACAAAAC AAAAGAGGACACGCCAAAACCGCACCCACAAAACAGCCGCCCTCACACGC AACCCCCCGAACACACACTTTGTCGCAGACCGGGGGCGCGCAGGGGGGGG CGAGGAGAGCGGCGTCGAGAAGCCGTGGTGGGCAGGGCGAGCTTCAAGGC GGTGGGGAGCGCGCTGCTGGTGGCGGAGATGTCGGCCAACTTCGTGCAGT TCGCGGCGCACTTCCCCGCCATCGGGACGGACGTCCTCACGAGGCTCGCC GAGCTCTTCAGGGTGCGTGCGCGCGTGCGTGCCTGCCTGTGTGCGGCGTG CGTGCTTCTGTTGGGCCCTTGCTGCCATCCCTGTTTTGTTCGTGGTTTCA CCCGGCCGTGCGTGTGCGTGTGCCGTGCGTGTACCGTGCGTGTGTGCGTG TGTGTGCGTGTGTATGTGTGAAAATGTGTGTGTGTGTGTGTGTGGGTGGG TGGGTGTGTGGGTCAACTTTTCTCCTTGCTGATTGGTCGGAGCAAAAATG CTCGCGGCCGGGTGTCCCCTGTCTGCCTTCTAGCGCCGGTCGTGCGGCGG CTGAGAAGGTGGATGACTCTCCCCTCTCTCTCCCCGCTCGGTTGGCTGTT GTGTCGAGGTTTTTTGCGAACTGGTGTTCCGCTCGCTGGCGATCTCTCTT GAGTTCTGTTGCATCTCGTGCCCACACGACGAGAATACCCGGCATGCATG CCCTTCACGGTTACCTAAGGAATTGTGCTCGGGGCTCTGCCACTCCATCT CTCTCTGACAAAATCAACGCGACTGAAATCTCTCTTTCTACTCGGGGTGT GGTCGGCGACCGCCGTACAAAGAGCAGGGATCGAGTAAGATACACGACCC GCCCCGCTCCCTCTTCCTGAGGGCTCGCGTCATGGTACCTCCCTGGACAC ACCCCTGATGTCACCTGGACCAACATGCTCACGTATACGCACGCTTGTCC GGACTAGCCCCTTTTTGATGGGCCAGCCAGCTTAGGGCGGCACGTGCTAG CGCGAAACTTGCGCATGCACGTACAAATGCAGACCCCCTGCCTTGTCCAC GGAGACTCTATGGTGCAGAACGCGCTCATTGTTTTGGCGCCCGCTTACGC TTGGCTGTTGTTGTTGCTCAGCCGTCCACCACGAGTAATCGCTGCGACAA AACGGTGGGAAAGCGCTTCGCTAGCACAAAATCACCTCGGCCCCCCCCGC ACCTTCCGAATGGCAAAACCATTCACGGAACCCCTGCACGACGTGCGCGC CAGGTGTTCAACTCTCGCGCGACCCAGCTTGTGCTCGGGGCGGGCGCCAT CCACTCCGCTGCCAAGCTCAAGTCGATCTCTGCCAAGCACTTGGCCCTCT GCTGTCAGTCGTTGGGCCTGGTCAAGTCTCTAATTCCTCTCCTCAAGGCG GCGCTTGCGACGAGGCTACCCCAGAAGCACCACCTGTTGCTGGCGCAGAT GGACGCTGTGTCTCAGGTCAGTTTTCCCCCTTTCTGTGTGCGTCTTCCCC TCGCGCGACTTCTTTTCTTTTCGTGATGTTTTTTTTTCTTGTTCGTTTTT TGGGATTGTATTCGTACGTTGATTTTTCCGTCCGGAAAGCGTCGTCCGAT GGAAACCTTATCTGGCCTGGCGTGATGTTCTTCGCCATGCCCAGTCACGC GCACGCGGAGTCCAAGCCGCTGTTTTGGCTTCGCGGTTGGAGTGCTCCCG TCGTGCCCCCCTTTCGTGTGCTCGTGATCCGATCCCACGATCGTTCTTGA TGACCGTTGTCTCAGGACTACCGGGATCACCGGGACAAGATTCTCAACAA GTTTGTGTCGATGATCGAAGAGCTGATCGAGGCAAGATCGAGCTCGCTCA AGCACACCGACTGGGACACGCCAGGAGGAGGAGGCGGGGGGGCAGGGGGG CGCGGCGGAGGGGGAAAGGTGGCGGCGGCTCAACCGATGGCGGAGGGCTC CGCTCCGGGAGGGGCGCCAGGGGGTGGGGCGGGGGGGGAGCCCTGCCAGT TCACGGCTGACGTTCGGAAAGCCGTCACGGCGATGCACAACATCCTGCAG CAGCAGCTTCCGCCCGAGCAGCTCCAGGTAAGCTTTTGGTGTGCGTCCAG GGAAAGCAGAAGGGACGCAAAGCAGCAGCAAATGTGGGTTGGAGTGGAGG CGTTTTGTCTCGACACGAAGGAAGATGGATAATGGCGCTCCGTGTCCCTC TCTCCCATCGCGGTGTTGATGACGAGCAAATCCGATGGTCCCATGGACAC ACGGGAGGCAGCAGCGGCGAAAGAAGATCGTGGCGGGCACCGCCCGTTCG CTCGTCCGCCCTGTCGTCCACGCCAGACTTTTCTTGGCTTCCCCAGCTTG GGTCTCAACATTGTCGTGTAAAATAGTCACTCCGATCTTCCTCCTCTCAC GTGCCCCCTCCCTGTGCGTGCTCTCGCTTACATACCTCTTCGCTTTTTTT CCCGCCGTCAGGCTGTGTTCCGCCGCATGTTCGCAGTGATAACGCGCAAG GTTCCCGCGTGTTTCGAGCGCGAGGGGGTTTCCCCTTCGACCGCGGCCGG TCGGCAGCGCATCCTCGACGACATCGGGTTCGCCTGCGCCGCGCTGTCAA CCCTGCGCGGGGTAGACTCGAGCACGCTCGGGCTGGAGCAGGTCATAGCG TCAATTTACGGCAGCGGCGGCGGCGGCGGCGGCGGGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7445:77..5215+

>mRNA_H-canaliculatus_M_contigs7445.1.1 ID=mRNA_H-canaliculatus_M_contigs7445.1.1|Name=mRNA_H-canaliculatus_M_contigs7445.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7445:77..5215+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGCCAACTTCGTGCAGTTCGCGGCGCACTTCCCCGCCATCGGGAC
GGACGTCCTCACGAGGCTCGCCGAGCTCTTCAGGGTGTTCAACTCTCGCG
CGACCCAGCTTGTGCTCGGGGCGGGCGCCATCCACTCCGCTGCCAAGCTC
AAGTCGATCTCTGCCAAGCACTTGGCCCTCTGCTGTCAGTCGTTGGGCCT
GGTCAAGTCTCTAATTCCTCTCCTCAAGGCGGCGCTTGCGACGAGGCTAC
CCCAGAAGCACCACCTGTTGCTGGCGCAGATGGACGCTGTGTCTCAGGTC
AGACTACCGGGATCACCGGGACAAGATTCTCAACAAGTTTGTGTCGATGA
TCGAAGAGCTGATCGAGGCAAGATCGAGCTCGCTCAAGCACACCGACTGG
GACACGCCAGGAGGAGGAGGCGGGGGGGCAGGGGGGCGCGGCGGAGGGGG
AAAGGTGGCGGCGGCTCAACCGATGGCGGAGGGCTCCGCTCCGGGAGGGG
CGCCAGGGGGTGGGGCGGGGGGGGAGCCCTGCCAGTTCACGGCTGA
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