mRNA_H-canaliculatus_M_contigs7445.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI) HSP 1 Score: 342 bits (876), Expect = 8.700e-104 Identity = 189/236 (80.08%), Postives = 202/236 (85.59%), Query Frame = 1
Query: 1 DVRAPALQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSS--SSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALA 702
D+ +QSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKW QADVTP+RQAVLDRLSSGQVF S S N G + + G G+ S Y NG +R+PGDPPAQPNFVGG R G R+GGR ERRREAVVG ASFKAVGSALLVAEMSANF+QFA HFP IGTD+LTRL EL RVFNSRATQLVLGAGAIHS AKLKSISAKHLALC QSLGLV+SLIP LKAAL+
Sbjct: 666 DITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWTQADVTPERQAVLDRLSSGQVFRPSVSAANANGTDGKEGSGAGGGSGYDNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAVVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRVFNSRATQLVLGAGAIHSTAKLKSISAKHLALCSQSLGLVRSLIPFLKAALS 901
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vps54 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD30_9PHAE) HSP 1 Score: 234 bits (598), Expect = 9.860e-71 Identity = 149/177 (84.18%), Postives = 153/177 (86.44%), Query Frame = 2
Query: 764 DYRDHRDKILNKFVSMIEELIEARSSSLKHTDWDTPGGXXXXXXXXXXXXKV----AAAQPMAEGSAXXXXXXXXXXGEPCQFTADVRKAVTAMHNILQQQLPPEQLQAVFRRMFAVITRKVPACFEREGVSPSTAAGRQRILDDIGFACAALSTLRGVDSSTLGLEQVIASIYGSG 1282
DYRDHRDKIL KFVSMIEELIEARS +LK TDWDTPGG XXXXXXXXXXX AAA A XXXXXXXXXX +PCQFTADVRK VTAMHNILQQQLPPEQLQAVFRRMFAVI RKVPACF+REGVSPSTAAGRQRILDD+ FACAALSTLRGVDSSTLGLEQ IA IYG G
Sbjct: 100 DYRDHRDKILTKFVSMIEELIEARSGTLKLTDWDTPGGGXXXXXXXXXXXXXXXXXAAA---AXXXXXXXXXXXXXXADPCQFTADVRKGVTAMHNILQQQLPPEQLQAVFRRMFAVIPRKVPACFQREGVSPSTAAGRQRILDDVDFACAALSTLRGVDSSTLGLEQAIAEIYGKG 273
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.190e-51 Identity = 121/255 (47.45%), Postives = 161/255 (63.14%), Query Frame = 1
Query: 19 LQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVF-------PSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERR-REAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
L ++ER+SG + Y LRST+L+QAKAF+E + E +LV LD+EKW QADV+P RQ +DRLSSGQ F P++ ++ +++ A G ++ P + + G RGGR R +A V +SFK V S LL+ EM + AAHFP + TDVL R+ EL R+FN+RATQLVL AGAIHS A+L I+AKHLAL CQ LGLV +LIP ++A+L+ +LP KHHLLL+ MD V Q
Sbjct: 74 LTAMERISGRSCYALRSTMLAQAKAFLEHKQEVQMASLVATLDSEKWTQADVSPQRQQAIDRLSSGQAFLPGTLVTPTNKPNDHXXXXXXXXDNPVAATAAAGEVKRPSETEGRAVTTGR----TDRGGRSRRELNDASVDGSSFKVVWSVLLLIEMVTAHLAIAAHFPMLATDVLQRVVELVRLFNTRATQLVLLAGAIHSTARLTKITAKHLALTCQCLGLVMALIPHVRASLSAQLPPKHHLLLSDMDRVKQ 324
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.430e-50 Identity = 125/254 (49.21%), Postives = 156/254 (61.42%), Query Frame = 1
Query: 19 LQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVF-----PSSASQENRAGKEAENGG--GSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
LQ VE+LSG + Y LRSTLL+QAKAF+E +HEA +LV LD+EKW QADV+ +RQA LDRLS+GQ F P +Q + SS+ A GT R G EA+V + +K V S LL+ EM + + AAHFP + TDVL R+ EL R+FNSRATQLVL AGAIHSAA+L I+AKHLAL Q LGLV +L+P ++AAL+ +LP KHHLLLA +D V Q
Sbjct: 88 LQLVEKLSGRSCYGLRSTLLAQAKAFLEHKHEAQLASLVATLDSEKWAQADVSSERQAALDRLSNGQAFLPRSYPKLQTQTSXXXXXXXXATLQSSSAKRAKGTKREVG--------------------------EAMVEGSRYKVVWSVLLLMEMVMSLLATAAHFPMLATDVLQRIVELVRLFNSRATQLVLQAGAIHSAARLTKITAKHLALTSQCLGLVMALLPHIRAALSAQLPPKHHLLLADLDRVKQ 315
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA) HSP 1 Score: 168 bits (426), Expect = 8.720e-42 Identity = 109/253 (43.08%), Postives = 153/253 (60.47%), Query Frame = 1
Query: 1 DVRAPALQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
D VE L G +G KLR TLL+Q KA+VE H+ANK LV DV+P+RQA++D ++ G V + + + A + NG ++++A + R +R+REA++ A +KAV S LL+ EM+ N ++ AA+FPA DVL RL+EL R++N+R QLVLGAGAI SA++L+SISAKHLALC SLGLV++L+P ++AA A LP+KH LLL +M+ VSQ
Sbjct: 631 DAALEFTSKVEALCGSSGSKLRVTLLNQTKAYVECHHDANKTKLV-----------DVSPERQAMMDHITGGHVLSHALAPSHLAA--SMNGASPAAAFAPQSTRSK-----------------------DRKREALLEGARYKAVWSTLLLVEMAYNQLRMAAYFPAAAPDVLGRLSELLRLYNARTMQLVLGAGAIQSASRLRSISAKHLALCAHSLGLVRALVPHMRAAFAAHLPRKHQLLLVEMERVSQ 847
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vps54 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C131_THAPS) HSP 1 Score: 164 bits (416), Expect = 2.150e-40 Identity = 112/242 (46.28%), Postives = 149/242 (61.57%), Query Frame = 1
Query: 28 VERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
+ER SG Y LRSTLL+QAK+FVE +HEAN TLV LD+E+WVQ V+ DRQA L RL SG+ +S A G+I D A P+ VGG R ++ +A V FK V SALL+ EM + V AAHF + T+V+ +++EL R+FN+RAT LVLGAGAIHSAA+LKSI+AKHLA+ Q +G+V +++P ++AAL +LP K H LL +D +
Sbjct: 1011 LERFSGRKAYGLRSTLLAQAKSFVERKHEANMSTLVAALDSERWVQCTVSADRQAALTRLCSGRAAFTSRKP------------------AAGSI----DNIASPS-VGGGR---------DKMTDAEVEGVRFKVVWSALLLLEMVMDDVACAAHFQTLATNVVGKVSELLRLFNTRATHLVLGAGAIHSAARLKSINAKHLAIVTQCIGIVLAILPHVRAALMAQLPAKQHSLLHDIDKI 1220
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS08_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.880e-39 Identity = 110/252 (43.65%), Postives = 147/252 (58.33%), Query Frame = 1
Query: 25 SVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVF---------PSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
S+ER SG Y LRSTLL+QAKAFVE +HE+N L LD+E+W Q DV+ +RQA L RL SG+ PSS++ N ++S+ NGT + G++ +A V +K V S LL+ EM + V AAHF + T+V+ +++EL R+FNSRAT LVLGAGAIHSAA+LKSI+AKHLAL Q LGL S++P ++AAL +LP K H LL +D +
Sbjct: 638 SLERASGGKAYGLRSTLLAQAKAFVERKHESNMANLAAALDSERWTQCDVSTERQASLIRLCSGRAVLSYTFGGDTPSSSTTTNV-------NNATTSTTVNGTPKKD----------------------GKKLADAEVEGIRYKVVWSCLLLVEMVMSNVACAAHFQTLATNVVGKVSELLRLFNSRATTLVLGAGAIHSAARLKSINAKHLALVTQCLGLFISILPHVRAALMAQLPSKQHTLLGDLDKI 860
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEE6_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.620e-39 Identity = 105/246 (42.68%), Postives = 142/246 (57.72%), Query Frame = 1
Query: 19 LQSVERLS-GCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
L VE LS G LR+TLLSQAKAFVE +HE+N + LD+E+W Q DV+ DRQA L RL SG+ SS S R G A+ T + P EA V +K V S+L + EM + AAHF ++ T+V+++++EL R+FNSR+TQLVLGAGAIHSAA+LKSI+AKHL+L Q LG+ +++P ++AAL +LP K H LL +D++
Sbjct: 237 LSQVESLSPGFKATGLRATLLSQAKAFVERKHESNMSAMAAALDSERWTQCDVSADRQAQLTRLCSGRAVTSSRSSTTRPGG------------ASSTDKSP---------------------------EADVEGVRYKVVWSSLFLVEMVMMNIDCAAHFQSLATNVVSKVSELLRLFNSRSTQLVLGAGAIHSAARLKSINAKHLSLVTQCLGMTIAILPHVRAALMAQLPPKQHNLLTDLDSI 443
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 54 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWP7_9STRA) HSP 1 Score: 160 bits (406), Expect = 3.810e-39 Identity = 111/245 (45.31%), Postives = 147/245 (60.00%), Query Frame = 1
Query: 28 VERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQ--VFPSSASQENRAG-KEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAV 753
+E +G Y LRSTLL+QAKAFVE +HE + +L LD+EKWVQ V+P+RQA + RL SG+ + S +SQ N A K AE+ SS N G R EA V +K V S LL+ EM + + FAAHF + ++++ +++EL R+FNSR TQLVLGAGAIHS AKLKSI+AKHLAL Q LG++ S++P ++AAL +LP K H LLA +D V
Sbjct: 588 LEGFTGSKAYGLRSTLLAQAKAFVERKHENHMASLASALDSEKWVQISVSPERQAAIARLYSGRAALSRSKSSQGNLATLKTAESINNKRSSV---------------NISSGRRELV----------EAEVEGKKYKMVWSCLLLVEMVMSNIAFAAHFQTLASNIVGKVSELLRLFNSRTTQLVLGAGAIHSTAKLKSINAKHLALVSQCLGMLTSILPHVRAALMAQLPTKQHTLLADLDRV 807
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZU2_9STRA) HSP 1 Score: 160 bits (405), Expect = 4.560e-39 Identity = 112/247 (45.34%), Postives = 146/247 (59.11%), Query Frame = 1
Query: 19 LQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWVQADVTPDRQAVLDRLSSGQVFPSSASQENRAGKEAENGGGSSSSYANGTIRVPGDPPAQPNFVGGPRPGARRGGRGERRREAVVGRASFKAVGSALLVAEMSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCCQSLGLVKSLIPLLKAALATRLPQKHHLLLAQMDAVSQ 759
+ VE+L+G GY+LR TLLSQAK F+E + + K +LV LDAE+WV+ADVTP+RQA L+RL SG F A + A E+ G SS A GD GR +RR + V+G FK V S LL+ EMS + + A FPA+ DVL RL EL +++N+R+ LVL A SAAKL SI AKHLAL QSL LV ++P ++AAL LPQ+ LL+Q+D V+Q
Sbjct: 581 IMQVEKLAGVTGYELRGTLLSQAKGFLEKKVQVQKASLVSTLDAERWVRADVTPERQAALERLVSGHAFLRVA---DLAKSESPLAGSPVSSNAGSPTAANGDAHT---------------GR-KRREDVVLGGRRFKVVWSVLLLLEMSTDLLSILAIFPALVVDVLQRLLELVKLYNTRSYHLVLLGEATQSAAKLTSIRAKHLALSSQSLHLVTHVLPHVRAALLGHLPQQRRALLSQLDKVTQ 808 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7445.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7445.1.1 >prot_H-canaliculatus_M_contigs7445.1.1 ID=prot_H-canaliculatus_M_contigs7445.1.1|Name=mRNA_H-canaliculatus_M_contigs7445.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=182bp MSANFVQFAAHFPAIGTDVLTRLAELFRVFNSRATQLVLGAGAIHSAAKLback to top mRNA from alignment at H-canaliculatus_M_contigs7445:77..5215+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7445.1.1 ID=mRNA_H-canaliculatus_M_contigs7445.1.1|Name=mRNA_H-canaliculatus_M_contigs7445.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5139bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7445:77..5215+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7445:77..5215+ >mRNA_H-canaliculatus_M_contigs7445.1.1 ID=mRNA_H-canaliculatus_M_contigs7445.1.1|Name=mRNA_H-canaliculatus_M_contigs7445.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7445:77..5215+ (Hapterophycus canaliculatus Oshoro7m male)back to top |