prot_H-canaliculatus_F_contig14009.3191.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14009.3191.1
Unique Nameprot_H-canaliculatus_F_contig14009.3191.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length72
Homology
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.810e-38
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELP  GCCTWQFNFAFNL
Sbjct:   82 VAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 148          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.990e-37
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELP  GCCTWQFNFAFNL
Sbjct:   85 VAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 151          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.900e-29
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVVARP+GDF Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE  A GCC WQFNF F+L
Sbjct:   59 VAMDTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEF-AEGCCCWQFNFKFSL 124          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.190e-28
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVVARP+GD +Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE  A GCC WQFNF F+L
Sbjct:   55 IAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEF-AEGCCCWQFNFKFSL 120          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: E5RHL9_HUMAN (Poly(A)-specific ribonuclease n=15 Tax=Simiiformes TaxID=314293 RepID=E5RHL9_HUMAN)

HSP 1 Score: 102 bits (255), Expect = 9.190e-27
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQP-DFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNLRYVR 71
            ++ DTEFPGVV RP+G+F    D+QYQ LRCNVD+LK+IQLGL+F NEKGE P SG  TWQFNF FNL Y +
Sbjct:   37 IAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP-SGINTWQFNFKFNLTYKK 107          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: A0A4X2MA59_VOMUR (Poly(A)-specific ribonuclease n=3 Tax=Theria TaxID=32525 RepID=A0A4X2MA59_VOMUR)

HSP 1 Score: 100 bits (248), Expect = 7.380e-26
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQP-DFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVV RP+G+F    D+QYQ LRCNVD+LK+IQLGL+F NEKGE P SG  TWQFNF FNL
Sbjct:   37 IAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP-SGINTWQFNFKFNL 103          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: Q3V476_MOUSE (CCR4-NOT transcription complex subunit 7 n=21 Tax=Amniota TaxID=32524 RepID=Q3V476_MOUSE)

HSP 1 Score: 98.6 bits (244), Expect = 3.000e-25
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDF-NQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVVARP+G+F +  D+QYQ LRCNVD+LK+IQLGL+F NE+GE P  G  TWQFNF FNL
Sbjct:   37 VAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTSTWQFNFKFNL 103          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: A0A6V7LBJ4_9HYME (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LBJ4_9HYME)

HSP 1 Score: 98.6 bits (244), Expect = 3.650e-25
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQP-DFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNL 67
            ++ DTEFPGVVARP+G+F    D+QYQ LRCNVD+L++IQLGL+F +E G  P   C TWQFNF FNL
Sbjct:   44 IAMDTEFPGVVARPIGEFRTTADYQYQLLRCNVDLLRIIQLGLTFLDESGNTPGGTCTTWQFNFKFNL 111          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: UPI001A9DD9DE (CCR4-NOT transcription complex subunit 8 n=1 Tax=Ictidomys tridecemlineatus TaxID=43179 RepID=UPI001A9DD9DE)

HSP 1 Score: 100 bits (250), Expect = 4.290e-25
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDFNQP-DFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNLRY 69
            ++ DTEFPGVV RP+G+F    D+QYQ LRCNVD+LK+IQLGL+F NEKGE P SG  TWQFNF FNL +
Sbjct:   37 IAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP-SGINTWQFNFKFNLTF 105          
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Match: A0A7S3YK52_9EUKA (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YK52_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 5.180e-25
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 0
Query:    1 LSQDTEFPGVVARPVGDF-NQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPASGCCTWQFNFAFNLRY 69
            ++ DTEFPG+VARPVG F N  ++ Y+ L+CNVD+LK+IQ+GLSF ++KG LP  G C WQFNF F+L+Y
Sbjct:   49 IAMDTEFPGIVARPVGPFRNSQEYHYRLLKCNVDLLKIIQMGLSFCDDKGCLPPGGVCVWQFNFRFDLKY 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14009.3191.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIU5_ECTSI6.810e-3892.54Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A6H5JI77_9PHAE1.990e-3792.54Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A835Z498_9STRA1.900e-2977.61Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A836C813_9STRA2.190e-2876.12Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
E5RHL9_HUMAN9.190e-2766.67Poly(A)-specific ribonuclease n=15 Tax=Simiiformes... [more]
A0A4X2MA59_VOMUR7.380e-2669.12Poly(A)-specific ribonuclease n=3 Tax=Theria TaxID... [more]
Q3V476_MOUSE3.000e-2567.65CCR4-NOT transcription complex subunit 7 n=21 Tax=... [more]
A0A6V7LBJ4_9HYME3.650e-2563.24Poly(A)-specific ribonuclease (Fragment) n=1 Tax=B... [more]
UPI001A9DD9DE4.290e-2567.14CCR4-NOT transcription complex subunit 8 n=1 Tax=I... [more]
A0A7S3YK52_9EUKA5.180e-2560.00Poly(A)-specific ribonuclease (Fragment) n=1 Tax=L... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..70
e-value: 4.3E-29
score: 103.4
IPR039637CCR4-NOT transcription complex subunit 7/8/Pop2PANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 4..67
NoneNo IPR availablePANTHERPTHR10797:SF0POP2, ISOFORM Ecoord: 4..67
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14009contigH-canaliculatus_F_contig14009:1148..1930 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14009.3191.1mRNA_H-canaliculatus_F_contig14009.3191.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14009 1148..1930 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14009.3191.1 ID=prot_H-canaliculatus_F_contig14009.3191.1|Name=mRNA_H-canaliculatus_F_contig14009.3191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=72bp
LSQDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGE
LPASGCCTWQFNFAFNLRYVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR039637CNOT7/CNOT8/Pop2
IPR036397RNaseH_sf