prot_H-canaliculatus_F_contig1322.2648.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig1322.2648.1
Unique Name	prot_H-canaliculatus_F_contig1322.2648.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	500

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 465 bits (1196), Expect = 2.710e-149
Identity = 347/504 (68.85%), Postives = 360/504 (71.43%), Query Frame = 0

Query:   19 MNPNKRPPPSSSAGAFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGAMPPGTTPPPTAATGASAGGYRGTTPASVPPGAQGTPNPPSSAPHRHAPQQSYSPQQYSPYSAAQQQPQPTPYMPPPQXXQTYTPPQQSYGAPSAQSAY-PXXXXXXXXXXXXXXXXXXXXXXXSFAPPSYVQQGYAPPYGQAPPPPFPQQXXXXXXYGQQSYN-RGGXXXXXXXXXXXXDEISGPSVSSGXXXXXXXXXXXXXXXXXXXXQNATGYYP-PSANVMPSPQGGPYGGIPFSSERSPGGFGSMGMGGGA---------------ARPAPHSGPPGRGGGMGXXXXXXXXXXXXXXX---GRAVAGRGPPL-SGXXXXXXXXXSSGRGLLQPPMHRQAPVPPHDNGIYRPQMRW 500
            MNPNKRPPPSSS G FEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTI+ALQQIFSR+GKVDKIVMFDKGSGSQALVQMANVH+AMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEG++PPG TP PTAA G  A GYRG   AS  P  QG P PPSS  HRH PQQSYS QQYSPYSAAQQ PQ TPY PP QXX                S Y P     XXXXXX            S+  PSY+QQGYAPPYGQ   PPF QQXXXXXX GQ  Y+ RGG               S       XXXXXXXXXXXXX    XXX  +T YY  P+ NVMP PQ GPYG IPFSSERSPGGFGSMGMGGG                AR  P+SG PG      XXXXXXXXXXXXXXX   GRA AGRGPPL SGXXXXXXXXX    GLLQ PMHRQ P+ PHDNG YR QMR+
Sbjct:    1 MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGSLPPGVTPAPTAAPGVGADGYRGAPAASASPVTQGPPTPPSSTSHRHTPQQSYSSQQYSPYSAAQQ-PQATPYAPPAQXXXXXXXXXXXXXXXXXPSTYSPQHQQQXXXXXXPYGNVIPSGGGGSYTSPSYIQQGYAPPYGQTSTPPFSQQXXXXXXXGQHGYSSRGGARGG-----------SSDXXXXXXXXXXXXXXXXXXYSRPXXXHASTNYYTSPANNVMPQPQSGPYGSIPFSSERSPGGFGSMGMGGGXXXXXXXXXXXXXXXXARAIPYSGRPGXXXXXXXXXXXXXXXXXXXXXXXQGRAAAGRGPPLGSGXXXXXXXXXXXXSGLLQAPMHRQGPMFPHDNGNYRSQMRF 492

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.900e-35
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = 0

Query:   22 NKRPPPSSSAGAFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIG 156
            NKRP       A E  D  KR RD    +LRPG   P NVLLVRV++I +PV + AL  IFSR+G+V K+V+FDKGSG QALVQ A+   A  A ++ D+Q+MY+ CN IRVGYSNL N+TVK N++RSWDF  G
Sbjct:   36 NKRP-------ASEDRDHAKRPRDD-QPMLRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNLNNITVKQNSDRSWDFTTG 162

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.950e-33
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0

Query:   48 DKILRPGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 122
            DKILRPGQEQPGNVLLVRVTDIVHPVTI+ALQQIFSR+GKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ
Sbjct:   75 DKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 133 bits (334), Expect = 3.960e-30
Identity = 68/116 (58.62%), Postives = 81/116 (69.83%), Query Frame = 0

Query:   41 KRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIG 156
            KRARD     LRPG   P NV LVR+++I +P TI AL  IF R+G V KIV FDKGSG QAL+Q  +V  A  A +A DMQ+MY+ CN IRVG+SNL  +TVK NT+RSWDF  G
Sbjct:   18 KRARDE-QSSLRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNLTEITVKNNTDRSWDFTTG 132

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.340e-26
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 0

Query:   51 LRPGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGAMP--PGTTPPPTAATGASAGG 181
            LRPG  +P NV+L R+TD + PVT+ AL  +FS YG V KIVMF+KG+G+QALVQ  +V +A +A+E AD + MY+  NLIRVGYS   ++ V+ NT+R+WD+      EG+ P  P  T P +A + A+  G
Sbjct:  273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDYTKKKTSEGSAPAGPADTTPSSATSSATPSG 405

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: C5L0S5_PERM5 (Polypyrimidine tract binding protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L0S5_PERM5)

HSP 1 Score: 104 bits (259), Expect = 5.040e-20
Identity = 49/115 (42.61%), Postives = 76/115 (66.09%), Query Frame = 0

Query:   53 PGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGAMPPGT 167
            P    P  +LL  +T++V+PVT+  + Q+ +++G ++K+++F++G+  QALVQ+A+V TA  A E  D Q +Y+GCN I+V YS+L  + VK N ERSWDF     L G M  G+
Sbjct:  142 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEVKHNNERSWDFTNPSLLPGGMEAGS 256

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A7J6SYV6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SYV6_PEROL)

HSP 1 Score: 102 bits (255), Expect = 5.280e-20
Identity = 47/116 (40.52%), Postives = 78/116 (67.24%), Query Frame = 0

Query:   53 PGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGAMPPGTT 168
            P    P  +LL  +T++V+PVT+  + Q+ +++G ++K+++F++G+  QALVQ+A+V TA  A E  D Q +Y+GCN I+V YS+L  + +K N ERSWDF     L G++  G++
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSS 261

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A7J6LFE9_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE9_PEROL)

HSP 1 Score: 102 bits (255), Expect = 1.420e-19
Identity = 47/116 (40.52%), Postives = 78/116 (67.24%), Query Frame = 0

Query:   53 PGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGAMPPGTT 168
            P    P  +LL  +T++V+PVT+  + Q+ +++G ++K+++F++G+  QALVQ+A+V TA  A E  D Q +Y+GCN I+V YS+L  + +K N ERSWDF     L G++  G++
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSS 261

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A7J6MLJ2_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLJ2_PERCH)

HSP 1 Score: 101 bits (251), Expect = 4.420e-19
Identity = 47/117 (40.17%), Postives = 76/117 (64.96%), Query Frame = 0

Query:   53 PGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGAMPPGTTP 169
            P    P ++LL  +T++V+PVT+  + Q+ +++G ++K+++F++G+  QALVQ+A++ TA  A    D Q +Y+GCN I+V YS+L  + VK N ERSWDF     + G  P   TP
Sbjct:  142 PDSNPPNHILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADLETANIAKAQLDGQNIYAGCNTIKVQYSSLPQLEVKQNNERSWDFTNPSLISGPGPSTLTP 258

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BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Match: A0A7S0UA89_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UA89_HEMAN)

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-18
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0

Query:   53 PGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDF 153
            P     GN+LLV VT++VHP+T+  + QI  ++G ++KI +F K   +Q LVQ ++  +A  A EA   + +Y+ CN + + YSNLQ+VTV  NTERS DF
Sbjct:   10 PSGPDSGNILLVTVTNVVHPMTVDVVTQIMQKHGTLEKINIFSKHGKTQCLVQFSSPESAAEALEALQGKNVYNNCNTLHIIYSNLQDVTVHQNTERSHDF 110

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1322.2648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZ42_9PHAE	2.710e-149	68.85	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S2XYL8_9STRA	1.900e-35	55.56	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
D7FN53_ECTSI	1.950e-33	97.33	PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=...	[more]
A0A7S3UWL0_HETAK	3.960e-30	58.62	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]
A0A4D9D0W9_9STRA	4.340e-26	48.87	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
C5L0S5_PERM5	5.040e-20	42.61	Polypyrimidine tract binding protein, putative n=1...	[more]
A0A7J6SYV6_PEROL	5.280e-20	40.52	Uncharacterized protein n=2 Tax=Perkinsus TaxID=28...	[more]
A0A7J6LFE9_PEROL	1.420e-19	40.52	Uncharacterized protein n=5 Tax=Perkinsus olseni T...	[more]
A0A7J6MLJ2_PERCH	4.420e-19	40.17	Uncharacterized protein n=1 Tax=Perkinsus chesapea...	[more]
A0A7S0UA89_HEMAN	1.800e-18	44.55	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021790	PTBP1, RNA recognition motif 2-like	PFAM	PF11835	RRM_8	coord: 59..135 e-value: 1.5E-8 score: 34.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 59..158 e-value: 2.0E-23 score: 84.4
None	No IPR available	PANTHER	PTHR15592:SF18	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L	coord: 49..217
None	No IPR available	PANTHER	PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	coord: 49..217
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..151

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1322	contig	H-canaliculatus_F_contig1322:752..4403 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1322.2648.1	mRNA_H-canaliculatus_F_contig1322.2648.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig1322 752..4403 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig1322.2648.1 ID=prot_H-canaliculatus_F_contig1322.2648.1|Name=mRNA_H-canaliculatus_F_contig1322.2648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=500bp
RNTRPRGCDRARGQRGRDMNPNKRPPPSSSAGAFEGGDATKRARDHPDKI
LRPGQEQPGNVLLVRVTDIVHPVTIVALQQIFSRYGKVDKIVMFDKGSGS
QALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERS
WDFNIGPPLEGAMPPGTTPPPTAATGASAGGYRGTTPASVPPGAQGTPNP
PSSAPHRHAPQQSYSPQQYSPYSAAQQQPQPTPYMPPPQQPQTYTPPQQS
YGAPSAQSAYPPQQQQQQQQQQPYGSVMPSGGGGSFAPPSYVQQGYAPPY
GQAPPPPFPQQPYTPQPYGQQSYNRGGGGGGGRGGGGGSDEISGPSVSSG
SNGVGAGGGGSYSRPSPSPSQNATGYYPPSANVMPSPQGGPYGGIPFSSE
RSPGGFGSMGMGGGAARPAPHSGPPGRGGGMGGPGAGGPGGGGGGGQGRA
VAGRGPPLSGGAGGSVGGGSSGRGLLQPPMHRQAPVPPHDNGIYRPQMRW

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR021790	PTBP1_RRM