prot_H-canaliculatus_F_contig1259.2171.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1259.2171.1
Unique Nameprot_H-canaliculatus_F_contig1259.2171.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length520
Homology
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI)

HSP 1 Score: 600 bits (1547), Expect = 6.120e-210
Identity = 319/518 (61.58%), Postives = 394/518 (76.06%), Query Frame = 0
Query:    1 MSSLLTAIVRGAPKATGLVAGSGAGARATRTRGLRMLSAGPLSGLSRPIRESSASHPLPSALAQTSRAPTHLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAAETTGDAEGEGEQQATQAAAASPEPVYLVQVDGLPFNMPQEEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVVEMSGRAMGERWVNISRLAIPLEEARTVVIKGLQGFPQSDISAIFQEAVGTAPTEVIVIENPNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDVSLHVMKQASKEFRLVREKEPPFGPDVPDDKIIVLKGLPFSLLEDEIRALVVNHNIDEDEIVDMKVPKYNETQFNTGLAMFHLKSEEAVQLALKLKGTEIGDRWVDVARWNERATTGRKASHKSLMEETRSSVQTALRKKHPSLPVVAISGLPFQKTKDELIDYLETNGVKRSAMVEVEMPLFMQTQNNTGICWVVLDDESAYGDMMALNGAVMDDRWLTFVD 518
            M+SLL+AI RG PKA   +AGSGAG RATR R LR L+AGPL   SRP           SAL+    AP + QQ                    XXXXXXXXXXXXX     +        E++ T   A SPEP+YL+QVDGLPF M  EE+EQWF +AGC+P KVT+PLWPERS+RAGQNKGKAYL F+ EE+V   + +SGR++GERW+NISRLA PLEEA T+ IKGLQGFP+S++ AIF+EAVG AP EV ++ENPNR+RG AF+KF+ P+LAR AL LDG+ ++N+WVDVSLHVMKQ+S EFRL    +PPFGPDVPD+ +++LKGLPFSLLEDEI+A ++NH I EDEIV + VPK+NETQFNTG+AM H KS+E+V  AL+LKGT IG+RWVDV+RWNER    ++ SH+  MEETRS+V+T+L++KHPSLPVV+ISGLPF KT++E+I++LE +GV RSAM+EVEMPLF+QTQNNTG CWVV+ DE AY  +M LNGA +DDRWLT VD
Sbjct:    1 MTSLLSAIARGTPKAARFMAGSGAGLRATRIRTLRTLTAGPLPADSRPSPS--------SALSPAPAAPINQQQLQRRSLSIQSEDTNPEEAGAXXXXXXXXXXXXXXXXXVS--------EEEVTPPPAESPEPLYLIQVDGLPFTMATEELEQWFEEAGCSPPKVTVPLWPERSIRAGQNKGKAYLHFSGEEDVRKALSLSGRSIGERWINISRLAQPLEEACTITIKGLQGFPESEVVAIFEEAVGAAPVEVKIVENPNRSRGLAFIKFEMPDLARAALHLDGTNIQNQWVDVSLHVMKQSSNEFRLGTGSQPPFGPDVPDEMVVMLKGLPFSLLEDEIKAFILNHEIAEDEIVAINVPKFNETQFNTGIAMIHFKSDESVARALELKGTHIGERWVDVSRWNERNKPNQRKSHRDQMEETRSAVKTSLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGTCWVVISDEGAYETLMELNGATLDDRWLTVVD 502          
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE)

HSP 1 Score: 573 bits (1477), Expect = 1.460e-199
Identity = 295/496 (59.48%), Postives = 365/496 (73.59%), Query Frame = 0
Query:    1 MSSLLTAIVRGAPKATGLVAGSGAGARATRTRGLRMLSAGPLSGLSRPIRESSASHPLPSALAQTSRAPTHLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAAETTGDAEGEGEQQATQAAAASPEPVYLVQVDGLPFNMPQEEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVVEMSGRAMGERWVNISRLAIPLEEARTVVIKGLQGFPQSDISAIFQEAVGTAPTEVIVIENPNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDVSLHVMKQASKEFRLVREKEPPFGPDVPDDKIIVLKGLPFSLLEDEIRALVVNHNIDEDEIVDMKVPKYNETQFNTGLAMFHLKSEEAVQLALKLKGTEIGDRWVDVARWNERATTGRKASHKSLMEETRSSVQTALRKKHPSLPVVAISGLPFQKTKDELIDYLETNGVKRSAMVEVEMPLFMQTQNNTGICWVVLDDES 496
            M+SLL+ I RG PKA   +AG GAG RATR R LR L+AGPLS  SRP         L SAL+    APTH QQ                                   A   TG+ E   E++ T   A SPEP+YL+QV+GLPF M  EE+EQWF +A C+PAKV +PLWPERS+RAGQNKG AYL F+SEE+    + +SGR++G+RW+NISRL  PLEE+ TV IKGL GFP+ ++ AIF+EAVG AP EV +IENPNR+RG AFVKF+TP+LAR AL LDGS ++N+WVDVSLHVMKQ SKEFRL    +PPFGPDVPD+ +++LKGLPFSLL+DEI+A ++NH+I EDEIV M VPK+NETQFNTG+AM H KS+E+V  AL+LKGT IG+RWVDV+RWN+R    +K SH+  MEETRS+VQ +L++KHPSLPVV+ISGLPF KT++E+I++LE +GV RSAM+EVEMPLF+QTQNNTG CWVV+ D S
Sbjct:    1 MTSLLSTIARGTPKAARFMAGGGAGLRATRIRTLRTLTAGPLSADSRPS--------LSSALSPAPAAPTHQQQLQRRFLSIQSEDINPQEAGATAAAAGE--------APAATGEGEEVSEEEVTPPPAGSPEPLYLIQVNGLPFTMATEEIEQWFDEAACSPAKVVVPLWPERSIRAGQNKGMAYLYFSSEEDTQKALSLSGRSIGDRWINISRLVQPLEESCTVTIKGLHGFPEGEVVAIFEEAVGAAPVEVNIIENPNRSRGLAFVKFETPDLARAALHLDGSNIQNQWVDVSLHVMKQTSKEFRLGSGSQPPFGPDVPDEMVVMLKGLPFSLLDDEIKAFILNHDIAEDEIVAMSVPKFNETQFNTGIAMIHFKSDESVARALELKGTYIGERWVDVSRWNDRNKPNQKKSHRQQMEETRSAVQASLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGACWVVISDVS 480          
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: UPI001455147A (G-rich sequence factor 1 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=UPI001455147A)

HSP 1 Score: 60.5 bits (145), Expect = 4.420e-6
Identity = 43/177 (24.29%), Postives = 79/177 (44.63%), Query Frame = 0
Query:  136 VYLVQVDGLPFNMPQEEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVVEMSGRAMGERWVNISRL---------------AIPLEEARTVVIKGLQ-GFPQSDISAIFQEAVGTAPTEVIVIENPNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDV 296
            VYL++  GLP++   E+V  +F D     ++  +     R    G+ +G A ++  SE++V   +E     MG+R+V +  +               A PL     V ++GL  G  + DI   F   +       ++     R  G A+V+F+ PE+A +AL      + N ++++
Sbjct:  133 VYLIRAQGLPWSCTVEDVLNFFADCKIRNSEKGIHFLLNRD---GKRRGDALIEMESEQDVQKALEKHRLYMGQRYVEVYEINSEDVDALMKSLQVKASPLANDGVVRLRGLPYGCNEKDIIDFFA-GLNIVDITFVMDHRGRRRTGEAYVQFEKPEMASQALMKHREEIGNRYIEI 305          
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: A0A6J1KA45_CUCMA (nucleolin 1-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KA45_CUCMA)

HSP 1 Score: 58.9 bits (141), Expect = 1.830e-5
Identity = 50/186 (26.88%), Postives = 90/186 (48.39%), Query Frame = 0
Query:  223 EARTVVIKGLQ-GFPQSDISAIFQEAVGTAPTEVIVIENPNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDVSLHVMKQA-----SKEFRLVREKEPPFGPDVPDDKIIVLKGLPFSLLEDEIRALVVNHNIDEDEIVDMKVPKYNETQFNTGLAMFHLKSEEAVQLALKLKGTEIGDRWVDV 402
            E++T+ +  L     Q+D+   F++ VG         ++  R +G   V+F+T ++A++AL L+G  + N  V + L   + A     SK+     +K    GP       I ++G   SL EDEIR+ + +H     ++  + +PK  ET    G+A    K  ++   AL+L G+E+   ++ V
Sbjct:  468 ESKTLFVGNLSFQVEQADVENFFKD-VGKPIDVRFASDHDGRFKGFGHVEFETADIAKKALELNGELLLNREVKLDLARERGAYTPYDSKDRNNSFQKGGRGGPS----HTIFVRGFDRSLGEDEIRSALQDHFSTCGDVTRVSIPKDYETGNIKGMAYMDFKDADSFNKALELNGSELNGEYLTV 648          
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: G1Q2F1_MYOLU (G-rich RNA sequence binding factor 1 n=3 Tax=Myotis TaxID=9434 RepID=G1Q2F1_MYOLU)

HSP 1 Score: 57.4 bits (137), Expect = 3.190e-5
Identity = 44/179 (24.58%), Postives = 82/179 (45.81%), Query Frame = 0
Query:  136 VYLVQVDGLPFNMPQEEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVVEMSGRAMGERWV--------NISRLAIPLEEARTVVIKG----LQGFPQS----DISAIFQEAVGTAPTEVIVIEN--PNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDV 296
            VYL++  GLP++   E+V  +F D      +  +     R    G+ +G A ++  SE++V   +E     MG+R+V        ++  L   L+   + V+      L+G P S    DI   F   +G    ++  + +    R  G A+V+F+ PE+A +AL      + N ++++
Sbjct:   31 VYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRD---GKRRGDALIEMESEQDVQKALEKHRLYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIIDFFAGVLGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 206          
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: W5PQN0_SHEEP (G-rich RNA sequence binding factor 1 n=6 Tax=Laurasiatheria TaxID=314145 RepID=W5PQN0_SHEEP)

HSP 1 Score: 56.2 bits (134), Expect = 7.510e-5
Identity = 44/180 (24.44%), Postives = 85/180 (47.22%), Query Frame = 0
Query:  136 VYLVQVDGLPFNMPQEEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVVEMSGRAMGERWVNISRL----------AIPLEEARTV---VIKGLQGFPQS----DISAIFQEAVGTAPTEVIVIEN--PNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDV 296
            VYL++  GLP++   E+V  +F D      +  +     R    G+ +G A ++  SE++V   +E     MG+R+V +  +          ++ ++ A  V   V++ L+G P S    DI   F   +G    ++  + +    R  G A+V+F+ PE+A +AL      + N ++++
Sbjct:   31 VYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRD---GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLHVKSAPVVNDGVVR-LRGLPYSCNEKDIVDFFAGHLGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEI 206          
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Match: A0A433QA13_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QA13_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 8.730e-5
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:  138 LVQVDGLPFNMPQEEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVVEMSGRAMGERWVNISRLAIPLEEARTVVIKGLQGFPQ 237
            +V + GLPF + Q E+E WF  AG  P      LW  R+    +  G  ++ F S ++    ++++GR++GER + +S  +  + EA   +   L GFPQ
Sbjct:  301 VVHLAGLPFEVTQGELEAWFSAAGLRPTT----LWMIRTSDHSKPSGSGFVIFGSHDDAMRALQLNGRSLGERSIEVSPSSDRVIEAAGSI---LAGFPQ 393          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1259.2171.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVS6_ECTSI6.120e-21061.58G-rich sequence factor 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KVQ1_9PHAE1.460e-19959.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001455147A4.420e-624.29G-rich sequence factor 1 n=1 Tax=Fukomys damarensi... [more]
A0A6J1KA45_CUCMA1.830e-526.88nucleolin 1-like n=3 Tax=Cucurbita TaxID=3660 RepI... [more]
G1Q2F1_MYOLU3.190e-524.58G-rich RNA sequence binding factor 1 n=3 Tax=Myoti... [more]
W5PQN0_SHEEP7.510e-524.44G-rich RNA sequence binding factor 1 n=6 Tax=Laura... [more]
A0A433QA13_9FUNG8.730e-532.00Uncharacterized protein (Fragment) n=1 Tax=Jimgerd... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 226..297
e-value: 0.0048
score: 26.1
coord: 441..517
e-value: 0.34
score: 10.7
coord: 138..215
e-value: 0.24
score: 12.1
coord: 327..403
e-value: 5.3E-4
score: 29.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 237..291
e-value: 1.5E-5
score: 24.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 326..407
score: 8.996
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 225..301
score: 11.52
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 424..518
e-value: 4.2E-7
score: 31.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 137..218
e-value: 5.4E-12
score: 47.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 219..313
e-value: 1.4E-7
score: 33.2
coord: 314..423
e-value: 4.2E-10
score: 41.3
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 237..464
coord: 83..214
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 222..305
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 139..216
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 432..514
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 316..408

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1259contigH-canaliculatus_F_contig1259:9605..17649 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1259.2171.1mRNA_H-canaliculatus_F_contig1259.2171.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1259 8522..17697 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1259.2171.1 ID=prot_H-canaliculatus_F_contig1259.2171.1|Name=mRNA_H-canaliculatus_F_contig1259.2171.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=520bp
MSSLLTAIVRGAPKATGLVAGSGAGARATRTRGLRMLSAGPLSGLSRPIR
ESSASHPLPSALAQTSRAPTHLQQQQQHQQRRLLSIQSEDSQDATEESSA
AAVAAPEEGAAETTGDAEGEGEQQATQAAAASPEPVYLVQVDGLPFNMPQ
EEVEQWFVDAGCTPAKVTMPLWPERSMRAGQNKGKAYLQFNSEEEVGAVV
EMSGRAMGERWVNISRLAIPLEEARTVVIKGLQGFPQSDISAIFQEAVGT
APTEVIVIENPNRTRGTAFVKFDTPELAREALGLDGSRVENEWVDVSLHV
MKQASKEFRLVREKEPPFGPDVPDDKIIVLKGLPFSLLEDEIRALVVNHN
IDEDEIVDMKVPKYNETQFNTGLAMFHLKSEEAVQLALKLKGTEIGDRWV
DVARWNERATTGRKASHKSLMEETRSSVQTALRKKHPSLPVVAISGLPFQ
KTKDELIDYLETNGVKRSAMVEVEMPLFMQTQNNTGICWVVLDDESAYGD
MMALNGAVMDDRWLTFVDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom