prot_H-canaliculatus_F_contig1136.1213.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1136.1213.1
Unique Nameprot_H-canaliculatus_F_contig1136.1213.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length330
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1136.1213.1 vs. uniprot
Match: A0A6H5JMA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.390e-23
Identity = 65/195 (33.33%), Postives = 96/195 (49.23%), Query Frame = 0 
Query:    5 CVYDCVHPLWGGGGSCRD----STCSCDPGYASKDFFGNPSCVLTSVLWSLYFVGAVSGAATAIFLGWHISRHFDTPLAARSTRKATLRLWIIAAA-----------------------------CFATSGISLSFAVLASLGGNVNPWDTYILSTIYTLMVPVLMLQYPMVVEYWLHTLPSQVGDVGGFYRKAR 166
            CV  C HPLWGG G+C      STC CD GYAS+D  G  SCV  SVL   Y   AV+   T+IFL WH S+        +STR A +R  ++                                 F  +G++ +F++  ++GG+++  + Y+L T Y + +PVLM   P+VV++W+ +LP  +     F  KA+
Sbjct:    4 CVRGCRHPLWGGNGACTTVSGTSTCLCDSGYASRDSMGRSSCVPRSVLVMAYATIAVTSLITSIFLLWHASKFRQLSRLHQSTRSALMRFRVLLCGREKPLKSTSIRPLPLLVHRSRLCCRRLYRSFFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAK 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1136.1213.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMA3_9PHAE1.390e-2333.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..122
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 193..203
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..192
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 149..168
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 204..225
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 226..329
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..148
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 47..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1136contigH-canaliculatus_F_contig1136:18975..23686 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1136.1213.1mRNA_H-canaliculatus_F_contig1136.1213.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1136 18820..24506 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1136.1213.1 ID=prot_H-canaliculatus_F_contig1136.1213.1|Name=mRNA_H-canaliculatus_F_contig1136.1213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=330bp
MSSGCVYDCVHPLWGGGGSCRDSTCSCDPGYASKDFFGNPSCVLTSVLWS
LYFVGAVSGAATAIFLGWHISRHFDTPLAARSTRKATLRLWIIAAACFAT
SGISLSFAVLASLGGNVNPWDTYILSTIYTLMVPVLMLQYPMVVEYWLHT
LPSQVGDVGGFYRKARRRIWTQIVVFWIIATANTISVVMLHFVHSGRSTP
VLPMSLHALCGLTTCLPFAHFTSFGRREGSDQLPRSSLLSPGRLWAMSSK
PAHVLVMPKADRESLERVETQATSPRHHLNDRVGGNPGGVSAATSAIGSC
ASPKAPLNAMPSARGRAWRIVPTVDEVDL*
back to top